Array 1 56-510 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRG01000115.1 Salmonella enterica subsp. enterica serovar Montevideo strain BCW_3982 NODE_115_length_2447_cov_1.31737, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 117 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 178 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 239 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 300 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 361 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 422 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 483 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCGCGCCAGCGGGGATAAACCGACGATTTATGAAATCCACCCGGTAAAAATGAAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17952-17251 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRG01000075.1 Salmonella enterica subsp. enterica serovar Montevideo strain BCW_3982 NODE_75_length_18085_cov_1.68246, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17951 29 100.0 32 ............................. TGTCCAGGCGATTTCCTGGAACCTGGCATTGC 17890 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 17829 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 17768 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 17707 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 17646 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 17585 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 17524 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 17463 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 17402 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 17341 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 17280 29 93.1 0 A...........T................ | A [17253] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 902-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRG01000017.1 Salmonella enterica subsp. enterica serovar Montevideo strain BCW_3982 NODE_17_length_79458_cov_1.65928, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 901 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 840 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 779 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 718 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 657 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 596 29 96.6 32 ............................A TGCCATCGCCGAGGGAGGGCCTCCAGATCATC 535 29 100.0 32 ............................. CTGAATAATTCGCCGTAGGTAGCCAGCGCAAT 474 29 100.0 32 ............................. CCGTCGCTGACGAACTGACTTTTCTTCATCTC 413 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 352 29 96.6 32 ............................A CATTGGGCACCGTACCGTTGCGAATACGTCGC 291 29 100.0 32 ............................. CCAGTAATCACAGACTTTCTCCGTGTCTTCAC 230 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 169 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 108 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 46 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GACGATTTATGAAATCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //