Array 1 18245-18996 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJOI01000013.1 Clostridioides difficile strain CD105KSE6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 18245 29 100.0 38 ............................. TTTTTAAAAAACGTGTTTGACGGTTTAACAGATGATGA 18312 29 100.0 36 ............................. TAGTTTCTTCTGCTAATTTTTTTGTAGATTCATTTG 18377 29 100.0 37 ............................. AATTTAGGATTAAACAAAGAGGTTAAATATGCACGTT 18443 29 100.0 37 ............................. ATTTGTCCTTTTCAAATCATTGAAAATAATGGTTTGA 18509 29 100.0 37 ............................. TAGATTATTTTACTACTAAACTTAACGAGTACAATGA 18575 29 100.0 34 ............................. GTTGCACCACTTCCAAAACAATTATCTAATACAA 18638 29 100.0 36 ............................. TCAATGTATGTTAATGTTACAAATTTTATTTATTAT 18703 29 100.0 38 ............................. ACGCTTCCTACTTTTGAAGTTCATAAAGATGATTTAAA 18770 29 100.0 36 ............................. CAAAACAATTAGTAGCACTACTTAAAACAACAGCAC 18835 29 96.6 37 .......................A..... AGCAATTCTGATATTTTTATTCTAATCATTTGAAATC 18901 29 100.0 38 ............................. CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAT 18968 29 89.7 0 .................CA........G. | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 98.9 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACTATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGGAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATACTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 60684-61565 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJOI01000015.1 Clostridioides difficile strain CD105KSE6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 60684 29 100.0 37 ............................. AAAATCTTAAAAGGTATGGGAAATAAATACTTTATTA 60750 29 100.0 36 ............................. TATAATATCATATTTTATGATTACTTGCAATACTTT 60815 29 100.0 37 ............................. CACATTGCAATTAACTCACCTTTTGGATCATTTATAA 60881 29 100.0 37 ............................. CCGGATTTTTCTGCTTCGACTGGTGTTATTGAGACTT 60947 29 100.0 36 ............................. TCTATTAAATTAGATTGGACTCCAATTATTGATTCT 61012 29 100.0 36 ............................. AAGTTTTTCAATAATAAAATCTATAAAATCTACAGA 61077 29 100.0 37 ............................. CTTTGGGAATCTATGCAAAATATAAAAAATAAATTTC 61143 29 100.0 36 ............................. ATACACAATTAGAAACATTAGATAGATATTATCGCA 61208 29 100.0 37 ............................. TGACTATAGCATGTATATATTCTTTTGTTTAAATCAA 61274 29 100.0 37 ............................. ACATCTGCGTCATATCTAAATAAATTATCTCCAACTT 61340 29 100.0 36 ............................. GCATATTTAGTTCCTTTTGTAGCATTTAATAAAGAC 61405 29 96.6 37 .................A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 61471 29 89.7 37 .C..............A......A..... TGCAATTTTTATTCGTTGTCCAATCGCTTTGAAATTT 61537 29 96.6 0 ...............A............. | ========== ====== ====== ====== ============================= ===================================== ================== 14 29 98.8 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : CTATTATTATATTTAACTGACATTTAAGTGACATTTAAGAAAAATATAATGCCTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATGTTTTCAGAAGCTTTTTTATCCATATCGTTTAAAATATGAGAATATCTATTTATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCTAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTATGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGTAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTATCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAATTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGCCCTTTGAAAATAAAAATTAAAAAATATTTAATGCTATTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAATTTTTACAGGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3089-3647 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJOI01000011.1 Clostridioides difficile strain CD105KSE6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3089 30 100.0 35 .............................. GGTGCGTAACTAACTGTATTTCTATGCTTTTTACA 3154 30 100.0 37 .............................. ATAATAAATATATTTCATTAAATGATGAAATTAAAAA 3221 30 100.0 35 .............................. TATAATTGTAATACAGATGTATTCAGATATATTTA 3286 30 96.7 36 .........C.................... TGAAGATAGACGAAGCTATGCTATGACTGTTGTAAA 3352 30 100.0 36 .............................. ACTACTGTTTCCATTCCACCAGAAATAAATGTTAAT 3418 30 100.0 37 .............................. TTTGCATTTGCTCCTGTAGTTGCTCTTGCTCCAGAAA 3485 30 100.0 36 .............................. TATAGATTATAATATAATTAACAAATAAAACAAGGA 3551 30 100.0 36 .............................. CAAAAAAGAATTATAATAAATTTAAACAACAAGCGA 3617 30 93.3 0 .......C.....................A | A [3642] ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.9 36 GTTTAAAAGTAACATAGGATGTTTTTAAAT # Left flank : GTTTATTTTAGTTTTGAGGGGGATTAATACAATGCGTGAAAGTTTACTTAATAAATATAATTTAAAAACTGATGAAGATGTAGAATACTTTGTGAAGTTTGCTAATGCGTTATATGAACTAAAACAGAATAGTGAAGAAAAATTTCAAGAATATGCAGAGATATTAAGAGGTATTCTTAGAGAACAAGAAGAGAGAAAAAATAAGTAAATAAATAGATAAAGCACTTATAAGTACATAAAAGTGCTTTATCTTCCAAAATATGCTATAATTGTAGTATCAAATATATAGGGTGATTACGCATCCTAAGTGTGAGATTATCCCAAGCAATTGGAATTGATACTCACAAAGATGATTACTAAATAAAGTAATTATCACCGTCCCAATAAACATTGGGTAAAAACATCTAAAATTTAAAAACACTTGGGATAAAACTTATAGACATAAGTAATTGCAATGATTTTAATGATTTATGTTGTGCAAAAATGTGTATTTTACAGTG # Right flank : ATTATAAAAGGAGGTGTTAAAGATGATAAGTACAAGAAAAATAAAAGTAAGATGTGATGATAGTACATTTTATACATTCTTTAGACAAGAGCAAAGAGAACAAAATAAAGCTCTAAATATTGGTATAGGTATAATACATGCTAATGCAGTATTACATAATGTAGATAGTGGAGCAGAAAAGAAACTAAAGAAAAGTATAGAAGGTTTACAAGGTAAAATTGATAAACTTAATAAAGACTTAGAAAAAGAGAAGATAACTGATAAAAAGAAGGAAGAAGTATTAAAAGCGATTGAAACTAATAAAAAGATATTAGATGGAGAGAAGAAGGCTTTTAAAGAATCAGAAGAATACAGAAAAGGAATAGATGAACTTTTCAAAAATACATACTTAAAATCTAATACATTAGACCATGTTTTAGATAGTATGGTTAATATTCAGTACAAAAGAACTTTAAGCCTAGTTACACAAAGGATTAAAAAAGACTATAGTAATGATTTTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAAGTAACATAGGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 5293-5718 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJOI01000011.1 Clostridioides difficile strain CD105KSE6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 5293 31 100.0 34 ............................... TTAAATATGTTATTACTGGAGAGCTTACATCATT 5358 31 100.0 34 ............................... AAAGTTAAAACTATTGTAATCGCCTAGTGTATTT 5423 31 96.8 35 ..............................A AGCCTCCATCTGTATTATAAATTCTATGGATAAAG 5489 31 100.0 35 ............................... GTATTTAAATGAGTTGTAAAATGTCTTTTAATATA 5555 31 100.0 35 ............................... CTACTATCGCAAAGTCAATATTACGACCCTCTTTG 5621 31 96.8 34 ................G.............. TAACTCTGCAAATTTTACAACTTCTGCACTACTC 5686 31 83.9 0 ................G.....AAA.....A | AA [5708] ========== ====== ====== ====== =============================== =================================== ================== 7 31 96.8 35 GTTGAAGAATAACATGAGATGTTTTTAAATT # Left flank : AGATGGATTTGATAATATTATCTTAAGAAACTGGTCATATTTTGAATTGCAGAAAATGATTGAGTATAAAGCTGAAAGAGAAGGAATTGCTGTAAGATATGTAAATCCGGCATATACAAGTCAGAAGTGTTCAAGATGTGGTGAGATAGACAAGGAAAATAGACAGACACAAGCAAATTTTAAATGTACTAAATGTGGATTTGAACTCAATGCAGACCATAATGCAGCTATAAATATAGCCAGAAGTATAGAATTTGTATAATTAAATAGATATAATATAAATATAGGGTGATTACGCATCCTAAATGTGAGGTAATCCCAAGTGATTTGGGATAGGCACTCGCAAAGATAGTTGTTAAATGTAGCAATTATCATCGTCCTAGCGAATCGCTAGGTAAAAACATCTGAAATTTAAAAACACTTGGGATAAATTTGATTAATGTTAGTATTTACAATGGTTATGTTGTTTTATTTTATTTAAGAATGTGCATTTTTAAGTG # Right flank : ATTTATATAAAACACTTACTTAAAGAGTAGGTGTTTTTTTATCGAAAGGATGTGATAATAATGTAAAAATTTTACTTATATAGTATAATAATCCTATAAAATATTATATGGGGGAATTATTATGGGGTTATTTGGAAAAGAGAATTGTTGTATTTGTGGAGAAAAAGGGAAACAAAAAATAGCTGATGGGTTTTTGTGTAAAGAGTGTTTTAAGAAATATGCAGTTGCCACCTTTACCCCAGGAAATAATTTATATGGATTGCCAACTAAACTAGAAGTCGAGAGAGCTATTGAATCAAAGGATACTAAAGAAGAAGAACTTAAAAATTTTAATCCTACAAAAAAAATATTAAAACTTATAGAATTTGATGATGATAATAAGAAATTTATTGTTTTAAATGGATTTAATAGAGAAAAAGTGAGTTTAAATGTTTATAATTACAGTGATGTTATAGAATATGAACTTTTGGAAAATGGTGAAACTGTGACTAAAGGTGGGA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGAATAACATGAGATGTTTTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 225975-226858 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJOI01000011.1 Clostridioides difficile strain CD105KSE6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 225975 29 100.0 38 ............................. AAGAACTTTTTATGAATGTAGAAAATGTTGAATTTATG 226042 29 100.0 37 ............................. TCATAGCATTAGTTAAGTTACTATAGTCTTTTAAATT 226108 29 100.0 36 ............................. TACCACACAACAACACAAATAAAACTATGAAAAGGT 226173 29 100.0 36 ............................. TTCCTTTCAAATCTCACAACATCAGAAGTTAAAATG 226238 29 100.0 36 ............................. CAATTTAGCAATCTTACTAAACTCTCTATACTCTTG 226303 29 100.0 36 ............................. CAAGTCAATTGCTCTTGACATATTATCACTAACAGC 226368 29 100.0 39 ............................. TATACTCAAGTCCTTTTTCTTTCATTTTTATTTTTACAG 226436 29 100.0 37 ............................. AACTTTCTATAAAATTATTAAGCAAATCATACTTAAT 226502 29 100.0 38 ............................. AATAATGTTGATAAGACAGCAGAGGAAATAAAAGCTAG 226569 29 100.0 36 ............................. AGTTTTCCTTATGCTGACCAAGTGTTTATGGGTACA 226634 29 100.0 36 ............................. GTTATAGTCTTTTGGATAACTACCCAATTAGGATTT 226699 29 100.0 36 ............................. AAGTCACACCGCCCTCCACACGACACTATAATAATA 226764 29 93.1 37 .............C.........A..... AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 226830 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ======================================= ================== 14 29 97.3 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAATGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAGTAAATTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGCGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTATTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAATGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGCATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTATATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTCGCATCATTTAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 304875-304252 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJOI01000019.1 Clostridioides difficile strain CD105KSE6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 304874 29 100.0 37 ............................. TCTTTTAAAAGCGCTTTTTCTATCTCGTTTATTTTTG 304808 29 100.0 37 ............................. TTTTCTCCTACTAATTCGTCCTTAGTTGGTATGTTCC 304742 29 100.0 37 ............................. TATAAAAAGTCACTATTTCAGTCTCTTTACTCTGCAA 304676 29 100.0 37 ............................. GTATTAATTAAACCTAAACAGGTTACAACATCTAACA 304610 29 100.0 37 ............................. GCGCTTAACTTTCTCTTTCACTTCTATTCCTCCATTT 304544 29 100.0 37 ............................. AGAATAGAATCTAACATATATACACCTCCAATTAAGG 304478 29 100.0 37 ............................. CACTAGGACAGGCACTCCACTTCTAAAGCTTATACTT 304412 29 100.0 38 ............................. CTCGAATCAGGATATAACTATTTAAAAGAAAACATAGA 304345 29 100.0 36 ............................. TGCTGTGATTTCACTAATAAAACAATTAATAATTGT 304280 29 86.2 0 ................G....T.CA.... | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 98.6 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AATAATGTAGATAATGTTGAAAATTTAGAATTCAATGAGTTTAAACTTAAAACCGAAGAAGAAGAGAAGCGAGAACAAGAGAAAATAGAACAAGAAAAAAACAGTTATAATAACTACATTCAAAACAGAGTGGTTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGCTAGATTCAGGAGCAATTACACAGGAAGAATATAATAAAAAGAAAAAAGAATTATTAGAATAGATAATATAGTAAGCACTTACAAGTATGTAGGTGCTTTTAAATTTACAAAGTATTCCATTTTAATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGCGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTATTCTGCTCAAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAGTTAGTAAAAACCTATTGACTGTAACTCGTTACAATATTGTTATTAATGTAACGAGTTACAGAAAAGAGGTGAATAAAATAGCAACTAAAAGTAGGGCAGAGTATATGAAAAATCGTCGAAAAGATAAAAGAGGTTTTAGTGTACTTTTAGACAAAGAAAAGTTAGATAAATTTGATGAAGTATTAGAGGAAAAGAATCTAACCAAGAAAGAATGGCTAGAAGAAAAAATCGACGAGGAACTGGAACAAAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCCTATGACGTATACTATCGTATATCAATTATAGTATATGTCATTCCTTAAAAAAATCAATTATTAAGGAGTGTAATATTATGAAAAATGAATTAATGATGTTTGAAGGAAAAGAGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 553006-552188 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJOI01000019.1 Clostridioides difficile strain CD105KSE6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 553005 29 100.0 38 ............................. TATTATTTCTTTAAGTGATGCTTGCGAAAAGTATAATA 552938 29 100.0 38 ............................. TCCAAAAACATATTCGTAAAATCCATAAGACCCCTCAA 552871 29 100.0 35 ............................. CTTTTCTTATGCGAACATTATTAAAAACCATCTAA 552807 29 100.0 36 ............................. CTAAAACTCGCTATATATTTCAAGTAGTTCACCTAC 552742 29 100.0 35 ............................. GAACAATAAAACAAAAGAAACATATACTCAAAACG 552678 29 100.0 37 ............................. TTTATACTGTTGAATACAAAACTTTTTTCCATTATTT 552612 29 100.0 38 ............................. TTTTTCTTTATTTATAAATATTTATCACTTAGCTTCAC 552545 29 100.0 37 ............................. ACTATTTACAAGCTTTATAACAGACAAATCTGGAAAA 552479 29 100.0 37 ............................. ATAAAAAAACGTATAATAAAAATAATTTCTATCTCTG 552413 29 96.6 37 ............................T TTTTCCTTTTTTGTGCTAGTTTTAAATTTATGCTTTT 552347 29 96.6 36 ............................T TTCAAAAGTTATAATATAATAGACTAAAAAACTGAT 552282 29 93.1 37 ................A...........T ATTATTTCCCCTCTATCACCATTTAATTTAGGTTCAT 552216 29 93.1 0 ................A...........T | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 98.4 37 GTTTTATATTAACTATGTGGAATGTAAAC # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCGACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : CGTATCCAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCCATTTTATCTCTAAACATATAAATTATTATCCCATTAAAAAACTTTCATAAAAACAAAAAGAACAATATCTCTTTGGCAACTGGCTGACATAACTCATAAGATATTTATATAAGTCTTAGTCCCTATAGCTTTGCGTCACTAGATTTCTCTAGTTTTGCCGATTTAGTTTTATTCTATAACTAAATAATACAATAGAATTAGTTATTATTCAATAAGATTGTTTGAAAATTGAATAAATTTATAGGTATGAACGTAATTTCACACTTAAAAAACAGACTAAATACGTAGAATATATAGAAAAATTTACCTGTAGTTTTTGTGATAAAAAGCTCCTATTATTAATTTAAGCTAGATAAGTTTGAGGAAGTGACATAAATTGAAAGAAGGAATATATTATGTTGAATAAAAAATTACCAGATGCAGAATTAAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGAATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 249829-248285 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJOI01000021.1 Clostridioides difficile strain CD105KSE6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 249828 29 100.0 37 ............................. TTTTTAGACATAAGTTTTAATCCTTCATCATCAATCA 249762 29 100.0 36 ............................. AAATATTAAATTGTACGTCCGACCTGTCCCATGCCT 249697 29 100.0 38 ............................. CTGGGACTGTTTCTATAGAATAAGAGGTTGCATTATCA 249630 29 100.0 37 ............................. CTGGGACTGTTTCTATAGAATAAGAGGTTGCATTATC 249564 29 100.0 37 ............................. TCGAAAGAAGAAACAATAAAAGAAGCTTTAGAATATG 249498 29 100.0 38 ............................. TGATATGTAATAATATTAAGGCTTTTTTATATGTTACA 249431 29 100.0 38 ............................. TTAGTACTTTAGAATTATTTTTGCTTAAAATTGATGAA 249364 29 100.0 38 ............................. TTATATCTTTTGTCTTGTATTTTTCCTGTAAATTTCTT 249297 29 100.0 37 ............................. AAGCAAATTCAGATTTCTTTATTGCTATTAAATCATC 249231 29 96.6 36 ...................T......... GCAACTATCACAGAAGTGTTTAAAAGCACCTCATAG 249166 29 100.0 37 ............................. GAATAAAAATAAATCAAACCACTCACCTCAAACTTTA 249100 29 100.0 36 ............................. ACTTTAAAAGAATATGAACGTATATATAATGCAAAA 249035 29 100.0 35 ............................. GGTTTTAAAGTGTTTACATATCCACTAAATTTTAA 248971 29 100.0 37 ............................. AAGAAAAGTACTTTTATAACTATCTTTTAACTAATGG 248905 29 100.0 38 ............................. CAGTTGGTGAGTTTTCAACATCTGTATCTGCTGTTATT 248838 29 100.0 37 ............................. TAAAAAAACTAAAAAATCAATACTTATAATAAAAAAG 248772 29 100.0 37 ............................. TTGCAAGAGAAGTAAAAATGGAAGAGATGCTACAGCA 248706 29 100.0 37 ............................. AGTGTTTAGTCGGCTCTTGCAGTGTTCTCTGTCGAGT 248640 29 100.0 37 ............................. CCTTTTAATTATTTTTTGATTATTTTTATAATTGATA 248574 29 100.0 37 ............................. TTGAAATAATGGACGACTTAATTTGTAAAATTAAAGA 248508 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGATACAGTGTCAG 248442 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 248377 29 75.9 35 A...........TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAAACATCC 248313 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ====================================== ================== 24 29 97.3 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATATATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTATACCTATTTTGGG # Right flank : AAAATACACTTACCTACAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAATAAAGATATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAGTATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 10698-10473 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJOI01000032.1 Clostridioides difficile strain CD105KSE6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 10697 29 86.2 35 .AA............A............G GGAGTAGGCAAGTTTTATAAACAAATAACAGGAAG 10633 29 100.0 37 ............................. TATATGGTGCTTTCCAGTCTTGTGGTTTTACAGGTTC 10567 29 96.6 37 G............................ GCGTTTAGGAATATGACAGCATCTATTAATACGACAA 10501 29 82.8 0 G...................AC.TA.... | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 91.4 37 ATTTTATATTAACTATGTGGTATGTAAAT # Left flank : ATTGATTTAGAAGATAGTGAAGTTAAGGGAGTTTGGGAAACTAATGGAAGTTGGACTGGCACTGTAAATAAATATACAAAGAGTGTAATAGATAAGGTTAGAAATTGGATAGAGGAAAATAATAGACCTACTAAGATTGCAGGTGAAAAGAAGAATTATCATGTGGTTTATAAGATTGAGTAAATTTATCAGTTGTATTAAATAATTTAGTTTAGTTTATTTTAGTTTTGAGGGGGATTAATACAATGCGTGAAAGTTTACTTAATGAATATAATTTAAAAACTGATAAGGATATAGAGTATTTTGTAAAATTTGTTAATGCACTATATGAACTAAAACAGAATAGTGAAGAAAAATTTCAAGAATATGCAGAGATACTAAGAGAAATACTTAGAGAACAAGAAGAGAGAAAAAATAAGTAAAATAATATGGATAAAGCACTTGGATATTATGTTGTTTCAAGTGCTTTATTTGGTAAAAAATGGTATAATATAGGTAGG # Right flank : TAAAAATAATCAAAAACACTTACTTGAATAGTAGGTGTTTTTTTATTGAAAGGATGTGATTATAATGTAAAAATTTTACTTATATAGTATAATAATCTTATAAAATTATTGTGCTAGGGGGATTTGTTATGTTTTGTTCGAATTGTGGTGCAGAAATCACAGGCGTAGGCAAGTTTTGTTCAAGTTGTGGGGTTGCTGTAGAAACTGAAATTATTGAAGATAATAATATTAAATCAAATGACCTAATCGTTGATGCAAATGGAATAGAAATAAATATGACTGAAATTTATAGAAAATATAGAAAAGAAAAAGTAAATGCAATAAAAAATGTAATGGAAATAAGTGGTTTGAATATAAAGGAAGCAAAAAAAATAGTGGATTCTTCCTTTGAAGAGTTAAAAATCAATTTTATTGATGATACTATGAGCAATTCAGAAAAGGAAAAAATAATAAATACTCAAAATAGAAAAAATAATATTGAAAAAGCTCAACAAGAATCA # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.77%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 13495-12415 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJOI01000032.1 Clostridioides difficile strain CD105KSE6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 13494 29 100.0 35 ............................. GCTAAACCAACTATCAAATTAAACAACTCGATAGA 13430 29 100.0 37 ............................. CTACTATATGCATTGCTATAAAACCAGCTTCATCTAC 13364 29 100.0 37 ............................. GTTTCCTCTACTTCTACATCAAATAAAATATCTTCTA 13298 29 100.0 36 ............................. ATACGTTACAGCAGTAAAGACAGAAATTGGAACAAA 13233 29 100.0 37 ............................. CCAAACGAATTTGTATTACTAAAATCATTCCACAACT 13167 29 100.0 37 ............................. TAGCTTGATAGTATCCACCCTCCATGGCATTGTTTGA 13101 29 100.0 37 ............................. TCAGAAACAGGAACATCAAAAGGAGGTTTAAAATCTG 13035 29 100.0 38 ............................. CATATGTTTCTCTAAATATATCAGCCTTGCATGGATAC 12968 29 100.0 35 ............................. TCCTTTGACTGCTTGAATTACAACAGGCGGAAGTA 12904 29 96.6 36 ............................G CCAGAAGAAGCCGCATCTGCAATAAAGAAGTATGGA 12839 29 96.6 38 ............................G ATTTATGTCTGATTTGTGTCCAAAAATAACCGATTTGT 12772 29 89.7 36 ................G...T.......G CCTATAGGAAGCTTAACTATATGTTCATAAAAAACA 12707 29 93.1 37 ................G...T........ AATATAACAAAGTGGATGTTCTCTAAAAATAAAGAGG 12641 29 100.0 37 ............................. ATTTTTGATGATTTAAACATTGATAAAAGTATGAAAC 12575 29 100.0 37 ............................. GATAACAAAGCTTGCAAAGTAGATATTTGTGTTTTTC 12509 29 100.0 37 ............................. AGTCACGTAATTACCTCAATTTAAGTATACTACACGA 12443 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 17 29 98.6 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATATGTTATAATAATTGTAGCAAGGATAATAATCGAAAGTGCGAAGGGTGATTATTTTCATATTAAACGCCAAATTCCAAATAAGGAAGGAGGTGAAATTATATGATAGGTTTTTTATTAAGCATACTAGCTGGTGTTATATCAGCTTATATTTATGACAAAATAAAAAATCACCCAGACGCCAATAAGGGTGATTTAAAAAAATAATTCTTTAAATCAATTTTGATGGAAATAGCTACTCTTGTATAAAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAATATGGTCTAACACTTGAAATACAAGGCATTGAGGGTGTGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGATGCGTATGTGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TGCTGTGATTTCACTAATAAAACAATTAATAATTGTGTTATAGATTAACTATGTGGAGAAAAACTAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTGTTTTGCTCAAATTGGTCGGTTGAGTGAAATAATTAGAAAAAATTAGTAAAAACTAGTAAAAACTCTTGAAAAGTGTCGCGATACAATGTATAATTATATTATCGCGATACAGAAAAGAGGTGAAAATTATTACTGATAGCAGTAGAGCAGATTACTTCAAGCAGAGACGACAGAATAAGAAAACTTTTAGTGTTCTACTAGATAGAGAGAAAGTAGAAAAAATTGAAGAACATTTAAAAAAGCAGAACAAGACTAAAACTATTTGGCTTGAAGAAAAGATTAATGAAGAGTTAGAAAAAGAGGAATAAAAAATAAGAGACGTTCTCCCCGACCAAAGATTGAACATCCCTTATTGACGTATATTATATACACTAACTATAGTATACGTCATTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 188813-189169 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJOI01000010.1 Clostridioides difficile strain CD105KSE6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 188813 29 100.0 36 ............................. GGGATAAAACAGAACAATTACTAAACATTGATTTGA 188878 29 100.0 37 ............................. TAGATGAGGAGAACAGGAAAGCAATAGAGAAAATTAT 188944 29 100.0 37 ............................. GAGGATATATACATACAACTGAAGATATGTCAGACGA 189010 29 100.0 36 ............................. TTCTTTATTAACATTATATAGCTCACATAAGTGTTG 189075 29 96.6 37 ............................G ACTTTAATAACTCTATTTTTTCCTTTTACAGTTATTC 189141 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 98.9 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TAGAGTGGAGTTCATGTACAAAAGATTATCCTCCCAACGATTCAAAGGGAGGTGAGTTCATGGATAACTTTTTGTTTAATGTTTTAGCTAGTTTAACAGCTAGTGTGGTAGTTTACTTAATCAGTAAACTATTCAAAAAAGCAAAAAGCCACTCTCGCACAAAGAGTGACTTACGAGTTGAATTTAAATTTATATTTAAATCCAAAAAATAAACTCTGTTTATGATGAACTCCACTCTAACGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTAGTACAGATATTCAAAAATAATATTTTTTTTGATATAATAAAAATGTAGAGATTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAAGCATTGAAATGTAAGGTATTGAGGGTATGTGATAAATCTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGCGAGTTGTATATGTGTAGATATTGAAAATACTTAGTTTATTTTGAG # Right flank : GGAAGCTAATATATCAGGAGTAGTATATATTGTAATGGATTCAGAAGGAGCGTGCGAATTTAAGATTGCAAAGGAAATGAAAGAGTCTGAATATCAGATAGACTTAAATAAAATCTTATAAAATAAATAAAATAGAGTGGTCCATGACTACTCTATTTTATTTTTAGTTTTTATATATTATTTATCTCTTTTTTTCAACTCTTCATCTATAAAATGACAAGCTAATAATAGCGGACTGATTTCTAAGCCAATTGACAAATCAACTATAGTTGGTATTGTAATATTTTTGTACTTGTTTCTTTCTAAATCAGATATATACTCTCGACTATAGTTAGTTCTATTTGCTAATTCTTTTTGTGTTAAACCTCTTAAAATCCTTAAATCTTTTAACATGTCTGTTTCCTCCTAAAGTATTATAGATAATCTATTTTTTACATATAGAAAAAAACAATGCGGTTAATAGTAACATTTTTTTGTGGAAATTTGTGGTAGAATGTAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //