Array 1 8089-5409 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQRC01000002.1 Listeria monocytogenes strain ICDC-LM3031 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8088 36 100.0 30 .................................... CCATGATTGATGACAAAACGGTATTTTCCT 8022 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 7956 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 7890 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 7824 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 7758 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 7692 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 7626 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 7560 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 7493 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 7427 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 7361 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 7295 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 7229 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 7163 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 7097 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 7031 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 6965 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 6899 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 6833 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 6767 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 6701 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 6635 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 6569 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 6503 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 6437 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 6371 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 6305 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 6239 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 6173 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 6107 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 6041 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 5975 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5909 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5843 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5777 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5711 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5645 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5579 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5513 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5447 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5412,5415,5420] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //