Array 1 550658-552213 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAT01000021.1 Escherichia coli strain 41-1BK entry21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 550658 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 550719 29 100.0 32 ............................. CCTACAGTTGCAATACGCTCACCAGGGCGGCG 550780 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 550841 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 550902 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 550963 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 551024 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 551086 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 551147 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 551208 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 551269 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 551330 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 551391 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 551452 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 551513 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 551574 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 551635 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 551696 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 551757 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 551819 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 551880 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 551941 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 552002 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 552063 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 552124 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 552185 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAGCTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42096-39505 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAT01000011.1 Escherichia coli strain 41-1BK entry11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42095 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 42034 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 41973 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 41912 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 41851 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 41790 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 41729 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 41668 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 41607 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 41546 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 41485 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 41424 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 41363 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 41302 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 41241 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 41180 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 41119 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 41058 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 40997 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 40936 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 40875 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 40814 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 40753 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 40692 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 40631 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 40570 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 40509 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 40448 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40387 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40326 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40265 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 40204 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 40143 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40082 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40021 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39960 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39899 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39838 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39777 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39716 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39655 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39594 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39533 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //