Array 1 10096-7246 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKP01000080.1 Vibrio paracholerae strain 2014V-1107 2014V_1107_contig80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10095 28 100.0 32 ............................ TGATATCAAAATAGTGCTATCGGGTCTTAGCT 10035 28 100.0 33 ............................ TGTTTAGCAACTTCCCCCCACGTTTCCCCTACA 9974 28 100.0 32 ............................ CATAGCGAACAGATAGCACGTCATCAGCATCA 9914 28 100.0 33 ............................ TGCTCTTGCTCGATCCACAATTGCGATATGGTT 9853 28 100.0 32 ............................ GGACAAGTAGTAAATCTTATTGATTCAATATC 9793 28 100.0 32 ............................ TTCATCATTGTGTTTTCGTTAAAAATAACCAT 9733 28 100.0 32 ............................ ATTGCACAAAATTGTCAATTTACAATCAATTT 9673 28 100.0 32 ............................ TGAGAAAATAACGTATACTAGCCTCATCACTC 9613 28 100.0 32 ............................ GTTAGCGTTGACAGTCCACATTAAATAACTCC 9553 28 100.0 32 ............................ CAAACACGCAGACAGAAATAGAGCAGATAATT 9493 28 100.0 32 ............................ ACTCACTCATCCTCGACCTCCCCACACATCTC 9433 28 100.0 32 ............................ TGATTGATGAAGCTCAGACCTTTTTCCCTCCT 9373 28 100.0 32 ............................ TAAACAAGATGAATGAGGCGCTTTATAAGCTG 9313 28 100.0 32 ............................ TTTAACAAAGAATAAAAACCGCCGATTTGCAG 9253 28 100.0 32 ............................ ATTATCGAACAGCTCGCCGTTACCGTAAGCAA 9193 28 100.0 32 ............................ AAAACGTTCTCGTGCTTTTTAAGAGATATGCA 9133 28 100.0 32 ............................ AGACGGGGTTATCTGCGTCGATGGTCAGATAG 9073 28 100.0 32 ............................ TAGTGACCCAACTGTAACGGCTTATGCTGGCT 9013 28 100.0 32 ............................ TCTTGAAGTGGCTGAGCAGTGCGATATGGATT 8953 28 100.0 32 ............................ TTGACGCAGGAACGCACCAGAACCGTCAGATA 8893 28 100.0 32 ............................ TCATTGACAATCACGTTCGCCACGTTCAGTTC 8833 28 100.0 32 ............................ ACATACTCCGAGGAAGGACAGGAAGAGGGCTA 8773 28 100.0 32 ............................ TTCTGTGGAGGTTGAAGGTTGCATTGGCCTTG 8713 28 100.0 32 ............................ GATGAGCGTTAAAGATTCTCAAACAGGTAAAA 8653 28 100.0 32 ............................ AACATGCGTTCAATGATCGCAGCCAACCAAGC 8593 28 100.0 32 ............................ GCTATCGGGCGTTATACAAAAACGACCAGAGA 8533 28 100.0 32 ............................ TTGATGATTTCGCGCGTTTCTGCATTGCAAAC 8473 28 100.0 32 ............................ TTTTTACGTGATGCGTATTGAGTAAGTGCAAA 8413 28 100.0 32 ............................ TACATCGACAACGGTGTAATCCGCATCAAATC 8353 28 100.0 32 ............................ TTTGTCTGTAGATAGGGTGGTGAGGTTTTTGT 8293 28 100.0 32 ............................ TGATACTCGCGCGCCGATGGGAACAGTGTCGG 8233 28 100.0 32 ............................ GAACGTCAGCATCAGCAGCGGGCGCCAGTTCG 8173 28 100.0 32 ............................ ATCCATCACTTTCAAGAGGTTGATAAACCTTG 8113 28 100.0 32 ............................ TTCTAGAGTGGAATCCATCGATTGAAGGATCT 8053 28 100.0 32 ............................ TCTCTCTGAGCCGCTAAGGCATTTTCAGCTTT 7993 28 100.0 32 ............................ GATACGGTCGGGCGACTTAATACGCTCGTTCA 7933 28 100.0 32 ............................ AACAGCAAATTCAACCACCTAGACCCCGCTAA 7873 28 100.0 32 ............................ AGTTGGCGAAGGTGCGGGAGATGCACTCCCCG 7813 28 100.0 32 ............................ ACGAAACAATCAAAACAGCTATCGACCAATAT 7753 28 100.0 32 ............................ CTGAGCCAACGCCTAACCCTGACCCAGAACCT 7693 28 100.0 32 ............................ ACGAAGGCAAAGAGTATTGGGTTAAGTCATTA 7633 28 100.0 32 ............................ ATTGGCCGCATAGCTAGTGATGCTGGTGCTGT 7573 28 100.0 32 ............................ TAGCGCAAATCAACCGCAACAAGTTAAAATTG 7513 28 100.0 32 ............................ ATGGTGGCGGAGAGCATACCAAGTACGGCCAT 7453 28 100.0 32 ............................ TTGAAGAAATGGCACTACGTGAAAGCCAAAAA 7393 28 100.0 32 ............................ TAAACGAATGGGATGGTGAGAACTACACAGGT 7333 28 100.0 32 ............................ TAGCATCAAATGAATTGTTGGAGTGTCCACGC 7273 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 48 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCACTGCATGATTTGCAGGGGTTAAATTGGTTAGGCCCTTTGGCTGGATATTGCAAGATTTCTACGGTTACGAATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : TCTGCTTTCCCCATCATATGGGTTATCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCTGTGCCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGGTCTCCTTATTTAATGCGCTCTAGCATCACACCTGCTTCCATATGGTGGGTGTAAGGAAATTGGTCGAAGAGGGCAAAGCGCACCACTTGATGGGTTTCCCCTAGGACTTGTAAGTTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTAGAGAATGCGCTCATAACCTTGCACCATTTTACAGGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAGCGGTAGCTTTGCAGATCGACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTGCCTTCCATCGCCTGAGTAAACTCTTCTGCCGACATGCGAATGATCTGCACATTGTCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1446-1298 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKP01000095.1 Vibrio paracholerae strain 2014V-1107 2014V_1107_contig95, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1445 28 100.0 32 ............................ ATTTGCAGCTTCACAAACGTGCGTCCGTCTTG 1385 28 100.0 32 ............................ GTGCAATCCAAGAGCTTGAAGCGATTGGTTTC 1325 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAAGTTTCAT # Right flank : TATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGCCAACGCGCGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTACAGTTGTCGTGTTTGAGTTTAGTGTTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTATGCTTAATCTCATAAAATCAATCGGTTGTGGCCTTTTCTTTGTTCCTTCGGCCATTCGATCTTGTTTGTCGGCAATGATTCAAAGCTGTCGCTGCTTGAAATGAATTGATGCTGTGAGTTTCGAGCGGTTGCCTCATTTTAGTTCTGAGCCGGTTCGTGTTGAGTTTCTCTTTCTCAAAGTCGCTTTGAGTGATTTGGCTCCTCGGCTTATCGGCTAAAAGCGTATCGGCAATTTACTATTGTTTTGCGCTGCCTAATGAAAAGGCAATTTGGCTGGCGCTTGTGGTTTAGCGTTATTGCCTCATTTGAGTTTTACGCCAATTTGCTGTGAGCTTGGTTGGTCAG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //