Array 1 53193-52145 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHH01000036.1 Vibrio cholerae strain N2777 NODE_78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 53192 28 100.0 32 ............................ GCCTGAGCTAATTCGCGCCCTGCGTCCCACGC 53132 28 100.0 32 ............................ CATTGGACACCACGCCAGCAACTACCTTCTCG 53072 28 100.0 32 ............................ GTCTAATTTTTCACGAAAAATCAGCCGTCACA 53012 28 100.0 32 ............................ TTACTGACTCGCAACACAACGAAATGCTAAAT 52952 28 100.0 32 ............................ TCACCTTGCTCGTTCCAGAGCACAAATAAGAG 52892 28 100.0 32 ............................ TGTTGTCGCGTTAGATGGAAGACCATTAACAA 52832 28 100.0 32 ............................ AAGAAGGGGAAACCGCCAGCCTAATGCTAAAC 52772 28 100.0 32 ............................ CAAAAACAAGCGCGAGCTTTTGCACTGCATTA 52712 28 100.0 32 ............................ ATTAGAATGATACCTCTGCAAGTTTCGCTTTC 52652 28 100.0 32 ............................ ATTCTTTGCTGGTGGCCTCTAATGGACTTGAA 52592 28 100.0 32 ............................ ATCAAGATATTTAGTATCAATTTTAGAGAGGT 52532 28 100.0 32 ............................ TTAAATAACCATCACGCAGCACGGCGCAATAT 52472 28 100.0 32 ............................ AATCTCACTGGTCATCATGGCTTTTTCTTTGT 52412 28 100.0 32 ............................ GCGTTAAAGCGTTTCTTCTGCCAGTAGTTATT 52352 28 100.0 32 ............................ AGACTGCGCCCACTCTTCCTGTACGTCGTATA 52292 28 100.0 32 ............................ ACACTGCTTTGAGGATGGATATAATGCGGATC 52232 28 100.0 32 ............................ TCTTCAACTTGACACACAGGTTCATCAGTGAA 52172 28 89.3 0 ...........C.............TT. | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAATCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCCTTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGTAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //