Array 1 58526-60144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVIM01000070.1 Neisseria elongata subsp. glycolytica strain 404_NMEN 491_291653_6043065_413_,...,384+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 58526 33 97.0 33 T................................ GTTAAAACAGCGGCCAAAACGATGGCGGAGGTG 58592 33 97.0 32 C................................ TTCGATTTGGGTAGTTCGTCGCGGAATTCGAT 58657 33 100.0 34 ................................. TAAAAACCGCGCCGCCCTTGTGGAATGGGTAGCA 58724 33 97.0 33 A................................ CTTTTCTGTTGGTAAATCGCTTAGATTTGCGCG 58790 33 97.0 34 T................................ GTTGTCGTTATTGTCGCTGTTGTCTGCCAGCAAG 58857 33 100.0 35 ................................. GGCAGACAACGTCTGACTACTGCGGCGCAGCTTCT 58925 33 97.0 33 C................................ AATGATTCGCCCCCGCGCCTCTCCGCGCAAAAC 58991 33 97.0 33 C................................ GGCGTTTGCCTTAGCGATAAGCTCGCGTTGTTT 59057 33 100.0 33 ................................. GATAGCAGGGCGAGAACCAGTTTTCAAGCCTTG 59123 33 97.0 34 T................................ ATTATAAAGTGAAAATAAATAAGGTTATTATACA 59190 33 100.0 32 ................................. GTAGTAAAAAGTAGCTGAATTGTGGTCAACTT 59255 33 100.0 33 ................................. GCGTTTTGGAGTGTTTATCGCATTTGGAATTTC 59321 33 97.0 33 C................................ TTCACGCAGGACACAAGACGGGCATTCATGGCA 59387 33 97.0 34 T................................ GCGGTAAGCTGCGGCTAAGGCTTGCGCTGCGGCG 59454 33 100.0 34 ................................. AAATTAGCCCTAAGCGGAGCGACTTCTATTAAGT 59521 33 97.0 32 C................................ AACAGTGTTTGGGTTTACGCCGCTTGCGATTA 59586 33 97.0 32 A................................ GATAAAGTATTGTTTTGTTTTCGCTTCGCTGG 59651 33 97.0 34 C................................ GTGTAAACTGCTGCTGTGTAAAGGTGCATAATTT 59718 33 97.0 33 T................................ GGCATCGCGCAAGGCTTTAATTTCGGCGTTCGC 59784 33 97.0 32 T................................ AACATTGGGCTGCGATTGTTTGCCCTTGCAAT 59849 33 100.0 34 ................................. CTCTGCCTTACCCGCAGATTGGCAGAAGGTTTAC 59916 33 100.0 32 ................................. ATAGTAAAAAGTGGCCGAACTGTGGTCAACTT 59981 33 100.0 33 ................................. TTCCTTTTCCTTTTAAAATCAGGATTTGTGCGT 60047 33 97.0 32 T................................ AAAGGCGTGCACCATGTATTCCGTGTCCGGTA 60112 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 25 33 98.2 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATAAAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACACGGAAGGACAGGCAAGGCTGCGGCGTGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAGTATTCAGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAGGACAAACTCTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGTAGCAAGTGGCGACGCAAAGTGGAACACCACGGCGCAAAACCGGCGTTGGATGTGTTTAAGGATACGTTAATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGCAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCTTAGCGAAATCAGGGCTGCGAAACCTGACGGAGCAAGGCTTTTGAGAGAGGC # Right flank : CGGTCGCCACCTCCTATTTTAAAGAGGTATCTTGATCTACGGCGTTCGAACAGCCATAGCCAACAAAATATCTTCGCTGAAATGATCTGCTGCTTTGTCAATATTTGAGGCGGTGCGTATAATCCCCGTTTTTATCACTACCGAACGAGGGGATTCGTCATGAGCGAAATCCAAATTGAGAAAAAAATGAATGTCGAGAGCTTCAATCTCGACCACACAAAAGTAAAGGCCCCTTATGTGCGGCTGGCCTGTGTGACCGACGGCGATTTCGGCGACAAAATCTACAAATACGACCTGCGCGTCTGCCAGCCCAATCAAGAGCATATGGAAATGCCGTCCCTGCATTCACTGGAACACCTGATGGCCGAATTGTCGCGCAACCATTCCGATAAAATCGTGGACATCAGCCCCATGGGTTGTCAGACTGGTTTCTATATCGCCCTGTTGAACATGGGTGATTATGATGAGGTGTTGCAACTGATTGAAAATACATTGAAAGA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //