Array 1 1521070-1515098 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATH01000001.1 Oligella urethralis strain NCTC11009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1521069 28 100.0 32 ............................ TTGTGGCTAAACACGGTGACGCAGGGTTAGTG 1521009 28 100.0 32 ............................ GCTGCTTGTTGCTGATACATGTCTTGCTCTTG 1520949 28 100.0 32 ............................ GCTTACGTGTTGGAGACTGAGAAGTTTAGTAC 1520889 28 100.0 32 ............................ ATAGTCGGACACATAGATATCCACCGCATTAA 1520829 28 100.0 32 ............................ GTATTCAAAAGCTTCTTTTAGCTGTTTGATTG 1520769 28 100.0 32 ............................ GCGGGGTAAAAACGACCTCTACAAGCCCTAAC 1520709 28 100.0 32 ............................ GGGGATACGCACCGTTGTATCTGTGAATTCTT 1520649 28 100.0 32 ............................ ACGTAACTCGGACGGCGTGCTTGAACCATCAC 1520589 28 100.0 32 ............................ ATTTGAATTAGATTTAAAAGGTGGTGTTATTA 1520529 28 100.0 32 ............................ TCTCGTCACCCGGCTGTGAGATCAACGCGCAG 1520469 28 100.0 32 ............................ AGGACGCTGTTAGCGGTGAGCCAATATCCACC 1520409 28 100.0 32 ............................ AGTAACTTTAACCGATATCCGCAACTACCTAA 1520349 28 100.0 32 ............................ ATGGGCGGCGCTATTTTATTTCGCACTGATCC 1520289 28 100.0 32 ............................ GAGTAGGATGGGTAGATGAGTGCTTTCCTTGC 1520229 28 100.0 32 ............................ AAAGGAGATCGATGTCTTAATTAACATCCTGC 1520169 28 100.0 32 ............................ TGGAGCTTGATATGTTTCTTAAACCTGACTCT 1520109 28 100.0 32 ............................ GAACCCCTCAAGCCATTCCATAACGTCTTCAG 1520049 28 100.0 32 ............................ TCTAGCAACGTGATCAGATCCTCTTTGGATAC 1519989 28 100.0 32 ............................ TAACTGCGGTTGAGTCAAAAGACTCGCTTAGT 1519929 28 100.0 32 ............................ TATAGCCTAGCTTATACATTACCGGCAGATCG 1519869 28 100.0 32 ............................ TTAATGTAAGGTGCTGACTCAAGGAGTACAGC 1519809 28 100.0 32 ............................ TTGCGTCGTTGCGCTAAAAACTCCTCTCTATT 1519749 28 100.0 32 ............................ TGAGCATGACTGCATTGTCGCTAACGTTGACC 1519689 28 100.0 32 ............................ TTTACGCCTGCGCGCTAAAAACTCCTCTCTAT 1519629 28 100.0 32 ............................ TTGTGCAAAAGCCAACATGGTCGAGCGAGCAG 1519569 28 100.0 32 ............................ CGTCACAAACGACCAAGCAGGCAATATTCGAC 1519509 28 100.0 32 ............................ ATAAAAACAAGTAGTTTATCTGGGTTTTTATA 1519449 28 100.0 32 ............................ AACAACTGTTCGTAATCAATCTCTTCTACCAA 1519389 28 100.0 32 ............................ ATACACCCGCACTGCGCAGGTGCTCGCTGACA 1519329 28 100.0 32 ............................ TGATGATAAATATTTTAATGATTTGCGATTCC 1519269 28 100.0 32 ............................ AACCGCTTGTTATCAGCACATTGCCAGTCGTA 1519209 28 100.0 32 ............................ ACACCGTTGTGGACATGGCTATCCAACACGAC 1519149 28 100.0 32 ............................ TCTTCTTGCACAACTTTCCGAGCGACGCAATT 1519089 28 100.0 32 ............................ GTTCTCAACTTTCGGCGGTGCAATAACTGCTA 1519029 28 100.0 33 ............................ CTTTATTAAGCAATCACATGCTTAATAAATTAA 1518968 28 100.0 32 ............................ GCTTTACCCGTGCAGTTAAGCACGGGGCTAAT 1518908 28 100.0 32 ............................ TTGATGATCGAGACTTGAAAACTTTCAATCTG 1518848 28 100.0 33 ............................ TGAAAGCGGCTAGAGTCAATCACAGACTTGATG 1518787 28 100.0 32 ............................ AACTGGTCCCATCGTTCTCCCTCGGATGTGAT 1518727 28 100.0 32 ............................ TATTTGACTTTTTACAGCTTGAGAAATAAAGT 1518667 28 100.0 32 ............................ AACTCCGAATACGAGTCTGCTTAGTTTTGATG 1518607 28 100.0 32 ............................ ATAACCTAAAACTAAAGTTAAACTAAGACTAA 1518547 28 100.0 32 ............................ TTTGCTTGAACAAATAGAACGCAACGACTCGC 1518487 28 100.0 32 ............................ ATCCCGACGGCAAAGTCGAATCAAGTTATTTA 1518427 28 100.0 32 ............................ CGTGCTTGCAAGCACGGGGAAAGCAGCTATAA 1518367 28 100.0 32 ............................ GAAAGATTGATAATGTTTTTTTCGATCGCTTG 1518307 28 100.0 32 ............................ ATGTTTTTGTAGTACCTGCGCGATACTCCAAC 1518247 28 100.0 32 ............................ AATCCCGATTTGGCCATTTAAAAAAGTATCAA 1518187 28 100.0 32 ............................ ATTGTTCGCCATGTGTTCACGTAATCCACCCT 1518127 28 100.0 32 ............................ TGTTTGTTGTCCAAAGACAAGATTATGCACGT 1518067 28 100.0 32 ............................ TTTTAACTTTTTTGGAGTAAAAAATGAAAAGA 1518007 28 100.0 32 ............................ ACTAATGTTTTGCACCGCATCTTCTTGATACG 1517947 28 100.0 32 ............................ CAGCGCTCGCGCATTTGCATTGTTATGACCAC 1517887 28 100.0 32 ............................ ATCCGGCATACTTAGTGAACCAAAGTCCGCAC 1517827 28 100.0 32 ............................ ATTTTGGCTATTCAAACTCAACGTTAATTTTT 1517767 28 100.0 32 ............................ TTAGCTCGCTCATTGTGCGCTCAACACGATGG 1517707 28 100.0 32 ............................ ATTAACGAGCGCACTTATGCGGTACAGGGCAA 1517647 28 100.0 32 ............................ ATGCACTTTAAGCGCTGCGCATAACTGCGACG 1517587 28 100.0 32 ............................ GCTAAATCAGTAATTGCATCATGTATGCGCCT 1517527 28 100.0 32 ............................ ATTCCGCGTCATCTTTCAATGGACTATCTTCT 1517467 28 100.0 32 ............................ TGTAATGTTCCGAATCGCATCCGCTTGATAGC 1517407 28 100.0 32 ............................ TAACAAAGAAAATTGTTCGGCTAAGTAATAAA 1517347 28 100.0 32 ............................ TTGATGATCGAGACTTGAAAACTTTTAATCTG 1517287 28 100.0 32 ............................ TTTTATCGTAATGTCTCGTAATTCGTTTAGAG 1517227 28 100.0 32 ............................ CATGCTCTGTTTCTGTTCATCTTTCGCTCCTA 1517167 28 100.0 32 ............................ ATCGGGTAATCCACTAGCTTCGTGTTTAATCA 1517107 28 100.0 32 ............................ ACGTGCTTTCAAATATTCGCGCGCTGCCTGAC 1517047 28 100.0 32 ............................ AGATTTCGAGGCGGCAAGGGTATGGTTGCCAC 1516987 28 100.0 32 ............................ AGATTCACTTTGGAAAAGACTATTTTCCATCA 1516927 28 100.0 32 ............................ TATGCCCCATCAAAACCTTGATGAGCCTTGAT 1516867 28 100.0 32 ............................ TAAAAAGTCACTGTATGAATTAGCTTTGGCTT 1516807 28 100.0 32 ............................ TTGATTAGTTTCGGATCGGGCGGATCCAGTCG 1516747 28 100.0 32 ............................ GCCTTTGCGTCAGGTCGTGCGTTGATGCAAGA 1516687 28 100.0 32 ............................ TTAAAAACGCATCACGCACGCCATCGGGTAAT 1516627 28 100.0 32 ............................ GCTTGAGAAGTCGGGGATACGCACCGTTGTAT 1516567 28 100.0 32 ............................ TTAGCATCGGCTTGTGGTTCGATCGGCGCTTG 1516507 28 100.0 32 ............................ ACCGGCAAAACGGTTTATTCCATTGTTCGCCA 1516447 28 100.0 32 ............................ CAGTACGCTAATCCATTTTTTTCTTTTTTTGA 1516387 28 100.0 32 ............................ TGTCATCGTGCACTAAATAATAAAGGCGATCC 1516327 28 100.0 32 ............................ TTGCTCATCAACGTCTAAGCTTGGCGCTTCGC 1516267 28 100.0 32 ............................ TCAACAAGACAGCTACCGGCATCAACATCATC 1516207 28 100.0 32 ............................ TAAAGGCGCTGTGCCTACGATGTTACCTATGA 1516147 28 100.0 32 ............................ CCAACATTAAGTATGAAAACAATCAATACCAT 1516087 28 100.0 32 ............................ GCTACGTTTCTACGATGTTTTTCTGATCTCAT 1516027 28 100.0 32 ............................ TCGATTAATACTTGTGTCGTTTTGATTTGTCA 1515967 28 100.0 32 ............................ TGATATCTCAAGTGCTTTTTCGAACCCTCCTT 1515907 28 100.0 32 ............................ CATGCCCCATCAAAACCTTGATGAGCCTTGAT 1515847 28 100.0 32 ............................ CTTACAAGCTGAAATTGAGCGCTTAAAAGCGG 1515787 28 100.0 32 ............................ AAAGTAGCCGTTGCTGTCGCCGCCTTAGTCAC 1515727 28 100.0 33 ............................ TATGAGCGGAAAAATTCATTATGAGGTGCCCAC 1515666 28 100.0 32 ............................ TAGTACTCACGTTAGTTAGCTTAGTAATTGAG 1515606 28 100.0 32 ............................ AGTTATAACTGGGCTTTAACATATAGTCTTAA 1515546 28 100.0 32 ............................ TTGGACACTCATATTCTCCTAAAAAAATCCCT 1515486 28 100.0 32 ............................ TTTCTCCTAAATAAGTAAAAATAGGCTATCTT 1515426 28 100.0 32 ............................ AAGTTCAGCGCCCCACTGAATGGCAACTAAGA 1515366 28 100.0 32 ............................ GTTTAGTTTCCCGTCTCTCAATAACGACATCA 1515306 28 100.0 31 ............................ ATGCTCGGTAGTCATTCCGTCAAGATGTTGA 1515247 28 100.0 32 ............................ TCTCATCAGCCCACTTTAATTTGCCGAACAGT 1515187 28 100.0 32 ............................ ATACCTGATCAGGTGGTTTGGCCTTGCTAAGG 1515127 28 100.0 0 ............................ | TT [1515103] ========== ====== ====== ====== ============================ ================================= ================== 100 28 100.0 32 GTTCTCTGCCGTATAGGCAGCTTATAAA # Left flank : TCATTTCGAATATCCATGAGATCCCTAAACAGGTTCCAAGATACTTTACTTATAGTCGTGTGCAAAACAAAGGAACGAGCGATTTAAAAAGGATAAAAAAAGCAATGCAACGTAGAGGTAAAAGCGAGGCAGAGATTCAGAAGGTGTTAGAGCTAAGGATTCAAAAGCTGAAGCCTGTCACATTGCCTCATGCTCATATTAATAGCGCTTCTACTGGGCAAAGATTTTTGTTAATGATTAATCGCAAACCAGCTCCTATGAAAAGTGAAGGACTTTTTAGCAGTTATGGTCTGAGTCCTACCTCAACAGTACCTGACTTCTAGTTTAGTCTATGAGTCAATGATGCAAAAAACCCTTTTCTTAAGATAAACCAACTCTCTGCAAAGAGCGCGCTAGTACAAGGCTCACAAGGGATGATGTATTTTGAAATAGAAAAGGGTTTTATATGCATGTTCTTTAACAATTAGGATAATATAAAGGTTCAAGCATGAATTGTGCTA # Right flank : GCGCACTTGCATTTTCATTGTTATCACAGCTGTCTCAACAAATATCAAGAATTAAATGCGAAGATTAAACGCATCAATAATATATATACTGAAGAGCGCCTGAAGGTTAGGAGCATCAAAGAAGTCAAGAAAAAAGTGATAGCACCATCTCAGCGTAAAGAGATGGCGTAAACATCACGACATCAGGATTAGCTAGTCTTGCCATGAATTCAGCTTAAATCAAAGCGGCTTTACTACCCAGCCAAGAATTAAAATAACAATGAGCTAATTGCGGATTGCTTCTTATGGCTCACTACCAAACAAAAATTGTGAGGCTTTGGTCTCTACTTTCTTCGTCTACGTAACCTCAAGGGCTTTAAGTGGAATAAAATGTCATCAACAATTTAATTTAATCCCTCCCCGGAACTGCAGTTTTACACTGCGCTTGACTATGTTAAAAAAGCAATAGCTTTATTTATTTATAAACAATTATTCCAAGGAGTTCTACCATGAGATACATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGTATAGGCAGCTTATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCTCTGCCGTATAGGCAGCTTATAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //