Array 1 243768-243128 **** Predicted by CRISPRDetect 2.4 *** >NZ_CFNX01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain CH23 isolate CH23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 243767 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 243706 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 243645 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 243584 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 243523 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 243462 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 243401 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 243340 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 243279 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 243218 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 243157 29 96.6 0 A............................ | A [243130] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 261514-259900 **** Predicted by CRISPRDetect 2.4 *** >NZ_CFNX01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain CH23 isolate CH23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 261513 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 261452 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 261391 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 261330 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 261269 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 261208 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 261147 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 261086 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 261025 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 260964 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 260903 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 260842 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 260781 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 260720 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 260659 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 260598 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 260537 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 260476 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 260415 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 260354 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 260293 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 260232 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 260171 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 260110 29 96.6 32 ........A.................... CAGGTTATGCGCAAAAATTAATTCATATTATA 260049 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259988 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259927 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //