Array 1 83050-80452 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZEC010000007.1 Bifidobacterium dentium strain 2075B Contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 83049 36 100.0 28 .................................... GCTCGTCTTCCACACGGACGACGGCGAA 82985 36 100.0 28 .................................... ATACGGCCGACCATTCCACGACGCATTC 82921 36 100.0 28 .................................... GCAGGTGTTGCAGACCGCCATCGCCGGC 82857 36 100.0 28 .................................... CATCCTGTGCGGTACCGCTCGCATTACA 82793 36 100.0 28 .................................... GCTGTTCGTCGATCAGACTGTAATCGAA 82729 36 100.0 28 .................................... CCGCCCATTTGAGGATGTGGAGTCGTCG 82665 36 100.0 28 .................................... GCCACCTCTAGTGATGGTTTGCACTATG 82601 36 100.0 28 .................................... TCGTGGTCACGCTTTACGCCCTGCTTAA 82537 36 100.0 28 .................................... ATAATGCGATTGAATCATGGCGTGGCTC 82473 36 100.0 28 .................................... AACGCCATGACCTTGACCTTCACGTTAT 82409 36 100.0 28 .................................... CTCGTACACGACGGGCGCGGAACAACGC 82345 36 100.0 28 .................................... TGGTATCCGTGCGGCTCATTTCGCGTCC 82281 36 100.0 28 .................................... CATTAAACACGAGCACCAGCAAGCTTAG 82217 36 100.0 28 .................................... GGCTCGGGTGTGCCGACTTTGACGAATA 82153 36 100.0 28 .................................... AGTGTTCTGGGTGGTGACTTCTTGGATT 82089 36 100.0 28 .................................... ACGCCACGCACGTCAAGGCTGTAGACCT 82025 36 97.2 28 .................T.................. TTTATCGCAATGACCTGTTCGGCCAATT 81961 36 100.0 28 .................................... GACGACTCCAGAATCCAATCTTTGGTTC 81897 36 100.0 28 .................................... GATCCCAGCCGAACGGCTCTCCGAACGG 81833 36 100.0 28 .................................... GTATCGACTCGAAGACCAGTCAGCTCAT 81769 36 100.0 28 .................................... GCTTGACATCGAACCTGCGCCCGTCGCA 81705 36 100.0 28 .................................... CGGCTAGCAAGGCTCAGCAGACGGCTGA 81641 36 100.0 29 .................................... CCATTCCAAGTCGGATTTCAGCTGGTTCA 81576 36 100.0 28 .................................... CATCGTGAACCACTTCGATGGATTCAAC 81512 36 100.0 28 .................................... GACAGCAGCATTTGCGACAGCTTGGCTT 81448 36 100.0 28 .................................... CCATTTCGGGAATCTCCCCAACGGCATA 81384 36 100.0 28 .................................... ATAACGGCAATCCGTTGACTACGTGGGA 81320 36 100.0 28 .................................... TTCGCGTCCTCTCGTGGTCGTGCGTGAC 81256 36 100.0 28 .................................... TACGGAAGCCACCGTGTCGGATATTGAT 81192 36 100.0 28 .................................... AAGCGTGACATCGTTGTGACATCGTGTG 81128 36 100.0 28 .................................... GGATTCATCGATGACCGTCGGCCAGATC 81064 36 100.0 28 .................................... GCAACTCGCCACCATCCCATTCACCGAC 81000 36 100.0 28 .................................... GCCACAATCGACACCAGCCGTCTCAAGA 80936 36 100.0 28 .................................... CCATGCGGGTGCGCTATGCGGCCCGTCA 80872 36 100.0 28 .................................... CGAGCCGGTAGGTCTCGTTGCTCCAGAT 80808 36 100.0 28 .................................... CAGTATTGAACGCATTGAGTGAAGCCCT 80744 36 100.0 28 .................................... CGGGATTCCGTTCTTTCTTTTTGCTCCG 80680 36 100.0 28 .................................... TGAAGTTGCAGTCTTCCACGTCTCCGCC 80616 36 100.0 28 .................................... GTTGGTGAACACGAGTGTCCTGTCCGTC 80552 36 100.0 29 .................................... TGACGTGCATGTGGTGGTTTCCGACTTGG 80487 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 41 36 99.9 28 CAAGTTTACCAAGAAGGGTAGAAGCTAATTCCCAGT # Left flank : AGTTCGACTCATCTGGCTTGACGATACCAAGTTCAATAAGCAGTTTCGCACAACAATTTGGCTTGTATTGCGAGAAGAAGATCGATGCATTGGAAGTGCCAGAATATCGAGGCCCTTATGAAAAAGGATGAGGACAGTGAAGGCATGTGGTGTCTGGTGATGTTCGATCTGCCGGTAAAAACGAGACGGCAACGACGAGATGCGACAGAGTTCAGAAACATGCTTTTAGACATGGGCTACAGCATGGTGCAGTATTCCGTATATGCAAGATATACGCCGACCCAATCAGGCAATAGATCGACGGTGATCGCAATAAAAGAAAATCTTCCTCCTGATGGTATTGTTCGAATTCTCCATGTCAGCGATCATCAATGGTCGACCGCATTGCGTTTTTCCAGTTCTAAACAGGTGGAGACTAATGAAACGCCGGACTATTTCACACTTTTTTGAACAGAAAAACCTAGTTAAAAGGCGGAAAATGGCCCTTCTTGGCAAGCATA # Right flank : ATGAATATGCGTCATCGTTCGGAAGGATGCGAGCACGATGAGGTTCATTCGACGCGAAGTGATATTACGGAAAAGAGGTTTCGGCTCACGATGCATACAGGTTCCGAATGTTTGATCATCGGCGCGCCCAAGCACGGCCATCTTGATTTCACCTATGGCCTGACGCAGGCCGGCAGAGAAGCGTTGATGCTGTCCGATTCCTGCGTGATGAAACTGTTCGACGTTTTCATTGGAGTATTGGACGAAGACGAAGGCTTGGAAAAGTCATGTCGGGGCAGGAAAGGCGTCTGAACAACCTCCGGAAGGTGCGGATAGACAATCCTTAAACAAAAGAAAATCCTGCAACCGCTGTGGAAGCCCTTTGGCTAACAGTCGTCTCGCAGGCACGATCGTCGGCATCTTCAAGGGACTGTTCGGCTGACCCAAGCGGAATATGAAGACGGATGAGTGACTTCAATGGCGACTTCATTGTGAAGTCGCCATGTTTATTGCCGGCCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTACCAAGAAGGGTAGAAGCTAATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 201241-197641 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZEC010000008.1 Bifidobacterium dentium strain 2075B Contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 201240 36 100.0 30 .................................... AGCACCATTAAGACGAGACGGGTGAAACTA 201174 36 100.0 30 .................................... ACCTTGACGGAAAACTATGATGTCCATGTG 201108 36 100.0 30 .................................... CGGTAATTATCGAATGATGTCCCGAATATT 201042 36 100.0 30 .................................... TAAGTATCTGGCGGATGTGATCGATGTCCT 200976 36 100.0 30 .................................... AGGACCGACGGCACGGAACCCCATCTTCCC 200910 36 100.0 30 .................................... AATCTTTCTATTAAATATTTCTTGCACGAT 200844 36 100.0 30 .................................... AATGGTACTAACTGTTTTAACGTCGTTTTT 200778 36 100.0 31 .................................... CCCTTTTCACCGTTTACGCGAAACTCATAAT 200711 36 100.0 30 .................................... CTGGACGACGACCAGAAACGCCGCTTCCAA 200645 36 100.0 31 .................................... CCCGACATGTCGAACACGCTCACTTCGCACA 200578 36 100.0 30 .................................... CGATGCAATCGAAATCGAACGACGGTCAGC 200512 36 100.0 30 .................................... CTTGAAGTCCCCGACGGTTCCGGACTCCTC 200446 36 100.0 30 .................................... TATGAAGAAGCGCAGGACCTGATCCGCCAA 200380 36 100.0 30 .................................... AGTGGTGCATGATGTGGTCGACGGATAGCA 200314 36 100.0 30 .................................... CGGGAAAATGAAGTGACCCCGCAATCACGC 200248 36 100.0 30 .................................... TATCTTCCTTATACTGGCCTTCATATGCTT 200182 36 100.0 30 .................................... CGGCTGTTGACCGGCGATTCTCGTATCGAA 200116 36 100.0 30 .................................... TGTTGAACAAGATGAAGGATGCGGACGCGA 200050 36 100.0 30 .................................... CCGGTCTGGTCGTCGGTGACCTGCACCGCC 199984 36 100.0 30 .................................... GTCGGGCGGTCACGTCCGGACCTTCGCCCT 199918 36 100.0 30 .................................... CGACGTGGGTGTCGGTGTTCGCCTTGAATT 199852 36 100.0 30 .................................... TACGAGGAAGCGCAGGACCTGATCCGCCAC 199786 36 100.0 30 .................................... TTGTGTGGTGCAACATGTTCGTTGGTTGAC 199720 36 100.0 30 .................................... ACCAGCTTTCTGAAGTCTTCCACCGTGACA 199654 36 100.0 30 .................................... GACCTTGATGGCCGTTACGGTGTTTACGTG 199588 36 100.0 30 .................................... GCTTGGTTGTTCCTGCGGATGATGCGTTGC 199522 36 100.0 30 .................................... GGTCAGAGGGAACGGCTTAATAGAACGCCT 199456 36 100.0 30 .................................... CGACTATGAGGGGCCCGGTCTTGCTTTGAC 199390 36 100.0 30 .................................... GTACGCCCACGCATCAACCTGCGTCTCCCA 199324 36 100.0 30 .................................... TGGCGTTGACGCGAACGCTTGTGCTCTGCA 199258 36 100.0 30 .................................... TGATGTCGGCCGAATCATAGGCGTAGATGT 199192 36 100.0 30 .................................... CAAGCCGGACGCCGACGCCTCGAAGACTTC 199126 36 100.0 30 .................................... GTCTGAAAAGGCGTTATATTCGATAGTGTG 199060 36 100.0 30 .................................... GCGATCTCTTCATGGATTACCTCTTCCTCA 198994 36 100.0 30 .................................... TCGGCGATGGCGAGGCGCGGCGTGAGGCGT 198928 36 100.0 30 .................................... GACACGCTTGCCAAGTACGGCCCTGACACA 198862 36 100.0 30 .................................... CAGTCCGTACAGCGTCGTATCGGACTTATA 198796 36 100.0 30 .................................... GTTCAACGCCTTCCAGTTCGTGCCTTTCTT 198730 36 100.0 30 .................................... CCGTCAACCATATAACATTGCACATCATGG 198664 36 100.0 30 .................................... AAGAACGATGACTGTCGTATCATCCCCAGC 198598 36 100.0 30 .................................... GACGCTGTACGGGTTGAGTAGGCGTGATTA 198532 36 100.0 30 .................................... ACTTGCCTTCAGATGTCTGTGCGACAGTGG 198466 36 100.0 30 .................................... CATCCACATGATTGGCGCAGAGCGTGTAGA 198400 36 100.0 30 .................................... CTGGCACGGACATTTCCAATTACGTGACGC 198334 36 100.0 30 .................................... AAATGGGGGCGGTATCAGGACGGATACGTG 198268 36 100.0 30 .................................... ACGTCGGTGTTTCCGTCACGACATTATCGG 198202 36 100.0 30 .................................... ATCGACAGCGAACTCCACCAAAAACGCCGA 198136 36 100.0 30 .................................... ACATGTCATGCCAAACGACGATCAGGCGAT 198070 36 100.0 30 .................................... AAGCGTTCCAGGAATCCGGCAGGTCAAGCT 198004 36 100.0 30 .................................... CAATTTCCACAATTCGATAGAATCGATTTA 197938 36 100.0 30 .................................... ACCTGCGTCCAGACACCGGCATCGTTTTTA 197872 36 100.0 30 .................................... GTTTCCAAGTATTCGTTCAGGTTGCGCATC 197806 36 100.0 30 .................................... CGAACTCGGTAGCTTGGAATGTGCCGAACT 197740 36 91.7 28 .................................ATA CATTTGTATGCAATGTATGCAGTCGTTT 197676 36 80.6 0 .......G..T.....G...T....G......T..T | ========== ====== ====== ====== ==================================== =============================== ================== 55 36 99.5 30 GTTTCAGATGCCTGTCAGATCAATGACCTAGACCAC # Left flank : ACTGCGCCGATGCTATTGATTATGATTCACTATTTCAGAAAACGGCTATTAAAAAGGTGGTAGAGAGCTTTTCTTCAGAACGATTAAGTAGGGTTCTTGCTCTGCAGACGGAAATGAGAACCATCATTCAGGATGAGATTTGGAGTGAGGATTTGCCGTTGGAGGTTTCTGCTACTTTAGACTTGAAGTCGGCGGTTTCCATGGTTAAACCACGAATCGATACATCTTCTTTGGGGTCCCTTTTTGATAAAATACAGCTGGTAGTAGATACTGCCGGTGCTCTTGCTGAGAGTAAGACGCTAGTGACGCTTCATATAATTCAATATTGTGATAACGACCAATTAATTTATTTGCATAAAGAATTGTTGAGACACCATTTGCAGCTTCTCGACCTAGAATGCTGCAGCAAGAAGGCCATCCTGGCAGAAGGAAGGAGCCATTATGTCGATAAGGATTATGTTCAATTCTCATAAATTGTTCAGAATCCTTTAAGGCTATCG # Right flank : CCTGTCAACTTCATGTATGGCGACAATTTGCAAGTGCGTTGTTTTGCAGGGATGAGCGACAGGCGATTGCTTGATAGTTATTATTCTGCACAGATTGGAATATCAACCATTTTGATTACTCTGGTCGTGATGTTGTTGAATATGTGAAAGCCGGGAGTGAGATGTGCTGTTCCCGGCTTTGTAATTCATCCGGTTTGATGTGGTTGGATTATTTTGCCGTCAGCAGGTTGTTGATGTCTATGAATACGGGATGCTCCGGTTCGTTGCCGTTTTGAACATGCAGTGCATAAAATTTTCGTCCGCTTTGATCTGGGAAAACCATGCCATGCCCACCCTGCTCGATCACAGGTTGTTCGGCATGGATCCATGTACCATGAATTGTGTTATCCGAGGAGTATGCCAATCCGACTGAGTAGCCGTTTCGGGCCCAACTGGACCACAGCATGACGAGCTCGCCGGACTCAGTACGTTCCAGATATGGTCCATCGGAGAAGAACGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACCTAGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //