Array 1 61-822 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALRX01000042.1 Streptococcus agalactiae MRI Z1-012 ctg120005467201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 61 36 100.0 30 .................................... AAACTAAAGATATTGACTCCCTGCAGGATA 127 36 100.0 30 .................................... TCTTAATTTAGAACCTTTTTTACTTCCTTT 193 36 100.0 30 .................................... TAGTAGCCATTATTATTATGGCTTTTATTT 259 36 100.0 30 .................................... GGATGATTTCGATTATGCGGCGGTGGTTGA 325 36 100.0 30 .................................... AAATGTTAATTTCATATCTACATCTTGTAT 391 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 457 36 100.0 30 .................................... TCCTCTTTCTATGTTTCAATTGCCAATTTT 523 36 100.0 30 .................................... AAAAAATCTTGAATCATCATATAAAATCTT 589 36 100.0 30 .................................... AGCTATCTTTTTCGTACTTTGAAATAGTTT 655 36 100.0 30 .................................... TGGAAAAAGGGCAAAGTATTCTTGATTATA 721 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 787 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GAGCTGTGCTGTTTCGAATGGTTCCAAAACCCCAACCGTCCACACTATACCCTAAAAGTAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 955-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALRX01000048.1 Streptococcus agalactiae MRI Z1-012 ctg120005467207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 954 36 100.0 30 .................................... TTTGTCATCTTATGGTGTGACCTAACCAAC 888 36 100.0 30 .................................... AATAGGGCTAGTGCGACACTCTCGAGCTTA 822 36 100.0 30 .................................... ATTATTTTATAAAGTGACAAATATGTCTGT 756 36 100.0 30 .................................... TTGCCAGAATGCTTTATTTTGCCTTTTTTA 690 36 100.0 30 .................................... CCCAACCGTCCACACTATACCCTAAAAGTA 624 36 100.0 30 .................................... AAATGTTAATTTCATATCTACATCTTGTTC 558 36 100.0 30 .................................... TCAAACAACATTGGTGATCTTATTGCGGTA 492 36 100.0 30 .................................... TCCAAAACAAATACGAATGCTTGAGCGATA 426 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 360 36 100.0 30 .................................... TTAACAGTTTCAAGTCTGTCTTGTTACTTA 294 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 228 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 162 36 100.0 30 .................................... GACCTCCTCGAAATTGCTATCATTCCATAT 96 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CTGGCGAAAAATGGTATTATCTCAAAGGCAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //