Array 1 41772-40887 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951494.1 Actinomyces graevenitzii F0530 Scaffold425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41771 29 93.1 32 N...........................G TGCCGGTCCCCAGTCCACTATAAATTTACGGA 41710 29 100.0 32 ............................. AACAAACACATAGAAAGACAATGACATGATAA 41649 29 100.0 32 ............................. ACGCGAAACGGGCAACCATTATTCACCGGCTT 41588 29 96.6 32 ............................G GTTTTTAAATGCTCTTGAAAATTGCTTGGTAT 41527 29 96.6 32 ............................G GTAAAGCGGTGTTTGTGCAGGTAGAGGGTATG 41466 29 100.0 32 ............................. AGCCTCGACTATGGCGCCGAAATTCTCTGGTA 41405 29 96.6 32 ................T............ TTCCTTTCGCTCAGTTCTGTCCGAAAGCCGGG 41344 29 96.6 32 ................T............ CGTAATTGATGGTTCCCTAGACGAGGATGGCT 41283 29 86.2 32 ......T....G.GA.............. ACCTGGAAAGCTCACGGGCGCATTGTGCGCAA 41222 29 86.2 32 ...........G.GA.............A AGCGGCTACACTACTAAACAAGCACTTATGGC 41161 29 96.6 32 ............................G TCAAAAGTCAAGGCCTCGTGGCGCAGTTGGTT 41100 29 89.7 33 ...........G..A.............A GCCGTGTCTCCACCCAGAACATCACGTATGCCC 41038 29 93.1 32 .............G..............G ATGATCTTGAGTAACTAGAACATAAGGGTGGG 40977 29 93.1 32 .............G...A........... GGGCACGCTCACGCTGTATGGGCTCTGCGTCA 40916 29 82.8 0 ........T............G....AGG | T [40890] ========== ====== ====== ====== ============================= ================================= ================== 15 29 93.8 32 GTTTTCCCCGCTCACGCGGGGATGAGCCC # Left flank : ACGGTTTTCCCCGCTCACGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCTCACGCGGGGATGAGCCTTCACGCCGCTCACCCCTGCCCGCTAAAACCACGTTTTCCCCGCTCACGCGGGGATGAGCCGCTTGCTGGTTAGACCTCTTAGAGTACTAGCAAGTTTTCCCCGCTCACGCGGGGATGAGCCCACACTAAAACGTTTACTACACACAACAAGCATGTTTTCCCCGCTCACGCGGGGATGAGCCGGCAAATCCCATCATTATTGGGAAAGCTGACGAGTTTTCCCCGCTCACGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TGCTGCGTCAGGTAGCGGCGCCACCTGTTTAGGCTGCGGCGCCCGCTTAGAGTGCAGCGTCACTTAGTGTGCGCAGCGTTTACTTGGTGGGCGCGGCGTCTAGCTACAAAAAGGGTGGGGCCAGCTCTATCGAGCTGCCCCCACCCTTATGTTCTAGTTACTCAGGACCTACCTGGATCAAAAGAGTCATCGTCATCGTCAAAGTCATCGTTGTACTTGGCGGCTAGATCCGAGTAGTCCTCGTCGTCGTAGCTGCTGCTTCCTGAGCGGGCCGACGTGGCAGCGAGCTCACGCTCTAGCGCCGCATAGTCAGTCTCAGGACTGTAGTACTTGAGCTTGCGGGCAACCTTGGTTGCCTTGGCCTTTTGACGGCCGCGCCCCATAGGCTCGACCCCCTCCAACGTCTGATCGCGCACGTAAAACGTGCTGTTTCGAAATGGTCTGAATTTATCGTGAGACAACCGTACAACGATAAGCGCCACAATCTCCATTCCACACGC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 42143-41870 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951494.1 Actinomyces graevenitzii F0530 Scaffold425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42142 29 93.1 32 N...........................T TCACGCCGCTCACCCCTGCCCGCTAAAACCAC 42081 29 100.0 32 ............................. CTTGCTGGTTAGACCTCTTAGAGTACTAGCAA 42020 29 96.6 32 ............................C ACACTAAAACGTTTACTACACACAACAAGCAT 41959 29 100.0 32 ............................. GCAAATCCCATCATTATTGGGAAAGCTGACGA 41898 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTTTTCCCCGCTCACGCGGGGATGAGCCG # Left flank : CATCCGTTTTCCCCGCTCACGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCGCTCACGCGGGGATGAGCCCCGGAAGGAACCACACCATGCCTATCTACCACGGTTTTCCCCGCTCACGCGGGGATGAGCCCCGTGGTCAATCAGGGTCTGGATGGCTGCAGGTGTTTTCCCCGCTCACGCGGGGATGAGCCTCCCATTTTTGAGAGGCACGCCGGGCGGCGATAGTTTTCCCCGCTCACGCGGGGATGAGCCTGACAGAGTTGGAAAGCGATAGGCTAAACTACGGTTTTCCCCGCTCACGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCTCACGCGGGGATGAGCCGTGCCGGTCCCCAGTCCACTATAAATTTACGGAGTTTTCCCCGCTCACGCGGGGATGAGCCCAACAAACACATAGAAAGACAATGACATGATAAGTTTTCCCCGCTCACGCGGGGATGAGCCCACGCGAAACGGGCAACCATTATTCACCGGCTTGTTTTCCCCGCTCACGCGGGGATGAGCCGGTTTTTAAATGCTCTTGAAAATTGCTTGGTATGTTTTCCCCGCTCACGCGGGGATGAGCCGGTAAAGCGGTGTTTGTGCAGGTAGAGGGTATGGTTTTCCCCGCTCACGCGGGGATGAGCCCAGCCTCGACTATGGCGCCGAAATTCTCTGGTAGTTTTCCCCGCTCACGTGGGGATGAGCCCTTCCTTT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 42452-42240 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951494.1 Actinomyces graevenitzii F0530 Scaffold425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42451 29 96.6 32 ............................C CGTGGTCAATCAGGGTCTGGATGGCTGCAGGT 42390 29 100.0 32 ............................. CCCATTTTTGAGAGGCACGCCGGGCGGCGATA 42329 29 100.0 32 ............................. GACAGAGTTGGAAAGCGATAGGCTAAACTACG 42268 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTTTTCCCCGCTCACGCGGGGATGAGCCT # Left flank : CCTGGGCTAGTTTTCCCCGCTCACGCGGGGATGAGCCGCCGTCCGCAGCTGAACTTGCCCGCCGTGAGGCGTTTTCCCCGCTCACGCGGGGATGAGCCTAGATACCCATGGTGTGGTGCGCATCGTAGGCAGTTTTCCCCGCTCACGCGGGGATGAGCCGTTCGCCCTCGCGGACGGCCTCACCCTGGAAGAGTTTTCCCCGCTCACGCGGGGATGAGCCGTGGACGTAGAGCGCTCAAAGTCACGTTCAAGGGTTTTCCCCGCTCACGCGGGGATGAGCCCCGCACTCACCCGCCACGGCCTCGCCCCCATCCGTTTTCCCCGCTCACGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCGCTCACGCGGGGATGAGCCCCGGAAGGAACCACACCATGCCTATCTACCACG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCTCACGCGGGGATGAGCCTTCACGCCGCTCACCCCTGCCCGCTAAAACCACGTTTTCCCCGCTCACGCGGGGATGAGCCGCTTGCTGGTTAGACCTCTTAGAGTACTAGCAAGTTTTCCCCGCTCACGCGGGGATGAGCCCACACTAAAACGTTTACTACACACAACAAGCATGTTTTCCCCGCTCACGCGGGGATGAGCCGGCAAATCCCATCATTATTGGGAAAGCTGACGAGTTTTCCCCGCTCACGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCTCACGCGGGGATGAGCCGTGC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGAGCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 43431-42670 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951494.1 Actinomyces graevenitzii F0530 Scaffold425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43430 29 100.0 32 ............................. TCAGCCAGGCCACGCAGTGCGTGGGGTAGCCG 43369 29 96.6 32 ............................G CCAAAAGTCACGCCGCGGTTACCGCTAGAGTT 43308 29 100.0 32 ............................. CCCAGCAGAGATTAGCCCCTGAATCCCCAGGA 43247 29 100.0 32 ............................. GCAATCACTATTCACCATTGGGGCGCCGATGG 43186 29 100.0 32 ............................. TGTCCTAGCATGAATCTAGGCCCCGGCGAGAG 43125 29 96.6 32 ............................A ACCCCCCGCCGCCTCACCCCTCCGGGTGGGGT 43064 29 100.0 32 ............................. CAGACTATGTTGATCTAATTAGTGCTTTAGGT 43003 29 96.6 32 ............................G GAGGGCAAGGTGGCCGTGCTAGCCCTGGGCTA 42942 29 96.6 32 ............................G CCGTCCGCAGCTGAACTTGCCCGCCGTGAGGC 42881 29 96.6 32 ............................T AGATACCCATGGTGTGGTGCGCATCGTAGGCA 42820 29 96.6 32 ............................G TTCGCCCTCGCGGACGGCCTCACCCTGGAAGA 42759 29 96.6 32 ............................G TGGACGTAGAGCGCTCAAAGTCACGTTCAAGG 42698 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.2 32 GTTTTCCCCGCTCACGCGGGGATGAGCCC # Left flank : CCTGCTGTTTTCCCCGCTCACGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCTCACGCGGGGATGAGCCGGCTATCGGCGACAGGGTAGACTGCTTGCGTCTGTTTTCCCCGCTCACGCGGGGATGAGCCGGGCAGGGCTGGGACTGGTAGGGGCAGGGCCAGGTTTTCCCCGCTCACGCGGGGATGAGCCGGTTTCGAACTTCCTGGCGGGCTTGCGAGCGGGGTTTTCCCCGCTCACGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCTCACGCGGGGATGAGCCTCATCGCGCGGGCTGCGGCGAGCCGCCCCGACA # Right flank : CGCACTCACCCGCCACGGCCTCGCCCCCATCCGTTTTCCCCGCTCACGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCGCTCACGCGGGGATGAGCCCCGGAAGGAACCACACCATGCCTATCTACCACGGTTTTCCCCGCTCACGCGGGGATGAGCCCCGTGGTCAATCAGGGTCTGGATGGCTGCAGGTGTTTTCCCCGCTCACGCGGGGATGAGCCTCCCATTTTTGAGAGGCACGCCGGGCGGCGATAGTTTTCCCCGCTCACGCGGGGATGAGCCTGACAGAGTTGGAAAGCGATAGGCTAAACTACGGTTTTCCCCGCTCACGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 43647-43798 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951494.1 Actinomyces graevenitzii F0530 Scaffold425, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 43647 30 100.0 31 .............................. CTGGCCCTGCCCCTACCAGTCCCAGCCCTGC 43708 30 100.0 31 .............................. AGACGCAAGCAGTCTACCCTGTCGCCGATAG 43769 30 96.7 0 .............................N | ========== ====== ====== ====== ============================== =============================== ================== 3 30 98.9 32 CCGGCTCATCCCCGCGTGAGCGGGGAAAAC # Left flank : ATGCTAGGACAGGGCTCATCCCCGCGTGAGCGGGGAAAACCCATCGGCGCCCCAATGGTGAATAGTGATTGCGGGCTCATCCCCGCGTGAGCGGGGAAAACTCCTGGGGATTCAGGGGCTAATCTCTGCTGGGGGGCTCATCCCCGCGTGAGCGGGGAAAACAACTCTAGCGGTAACCGCGGCGTGACTTTTGGCGGCTCATCCCCGCGTGAGCGGGGAAAACCGGCTACCCCACGCACTGCGTGGCCTGGCTGAGGGCTCATCCCCGCGTGAGCGGGGAAAACTGTCGGGGCGGCTCGCCGCAGCCCGCGCGATGAGGCTCATCCCCGCGTGAGCGGGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATCCCCGCGTGAGCGGGGAAAACCCCGCTCGCAAGCCCGCCAGGAAGTTCGAAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCATCCCCGCGTGAGCGGGGAAAACAGCAGGGCCAGGTGAGGTTTTTGGGGCGTGTGAGGCTCATCCCCGCGTGAGCGGGGAAAACACCCCACCCGGAGGGGTGAGGCGGCGGGGGGTTGGCTCATCCCCGCGTGAGCGGGGAAAACCCCGCCAGGATTTGGAGGCGCTGCGGGCAAAAAGGCTCATCCCCGCGTGAGCGGGGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCATCCCCGCGTGAGCGGGGAAAACCTCATGACCCAGTGTGTCACTACGCGGGAGGATGGCTCATCCCCGCGTGAGCGGGGAAAACCC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGGCTCATCCCCGCGTGAGCGGGGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 6 43897-44108 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951494.1 Actinomyces graevenitzii F0530 Scaffold425, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43897 29 96.6 32 N............................ GCAGGGCCAGGTGAGGTTTTTGGGGCGTGTGA 43958 29 100.0 32 ............................. CCCCACCCGGAGGGGTGAGGCGGCGGGGGGTT 44019 29 96.6 32 ............................C CCGCCAGGATTTGGAGGCGCTGCGGGCAAAAA 44080 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GGCTCATCCCCGCGTGAGCGGGGAAAACA # Left flank : GCTGAGGGCTCATCCCCGCGTGAGCGGGGAAAACTGTCGGGGCGGCTCGCCGCAGCCCGCGCGATGAGGCTCATCCCCGCGTGAGCGGGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATCCCCGCGTGAGCGGGGAAAACCCCGCTCGCAAGCCCGCCAGGAAGTTCGAAACCGGCTCATCCCCGCGTGAGCGGGGAAAACCTGGCCCTGCCCCTACCAGTCCCAGCCCTGCCCGGCTCATCCCCGCGTGAGCGGGGAAAACAGACGCAAGCAGTCTACCCTGTCGCCGATAGCCGGCTCATCCCCGCGTGAGCGGGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCATCCCCGCGTGAGCGGGGAAAACCTCATGACCCAGTGTGTCACTACGCGGGAGGATGGCTCATCCCCGCGTGAGCGGGGAAAACCCCACACCCGGAGGGGTGAGGGTGCGATTTTTTGGCTCATCCCCGCGTGAGCGGGGAAAACCCGTCGGCGCCCTTAAGGTTTGCGAGCCAGCCCGGCTCATCCCCGCGTGAGCGGGGAAAACGTGAGGGCCTCGCAGGTGGGTGGGCGTCAGCGCGGCTCATCCCCGCGTGAGCGGGGAAAACTTATATGCAGCGTCGGCTAGCTGGGGTGCGGTAGGCTCATCCCCGCGTGAGCGGGGAAAACCGCCGCCGTGGCAGCTACTGGGGTAGTTAAAGCGGCTCATCCCCGCGTGAGCGGGGAAAACACTAAGC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCATCCCCGCGTGAGCGGGGAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 7 45211-44206 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951494.1 Actinomyces graevenitzii F0530 Scaffold425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 45210 29 100.0 32 ............................. CAAAAGCAGGCGATTTGGCGGCGCAATTTGGT 45149 29 96.6 32 ............................C TCGCATACCCTCGCTAGGTAGGTCACCCACTG 45088 29 86.2 93 .........................NNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 44966 29 86.2 32 NNN.........................C TGTCTGGTGTCTGCAATGACGCTTACCTTAAC 44905 29 96.6 32 ............................C CTCCCCCTGCCTAGCCTGCGGGTGGCGGTCAT 44844 29 100.0 32 ............................. TAGACCCCTTTTCGTCACCAGCTTCACCGCTA 44783 29 96.6 32 ............................T CCACACCTGGCGCTCGTGATCGGTGGGCCAGG 44722 29 100.0 32 ............................. GAGAAGAAAAATAATGTCAGAACAAATTGTGA 44661 29 96.6 32 ............................C AAACGCTTGGATATGATAGAAACCAGCTTAGT 44600 29 100.0 32 ............................. CTTTAACTACCCCAGTAGCTGCCACGGCGGCG 44539 29 96.6 32 ............................T ACCGCACCCCAGCTAGCCGACGCTGCATATAA 44478 29 100.0 32 ............................. CGCTGACGCCCACCCACCTGCGAGGCCCTCAC 44417 29 100.0 32 ............................. GGCTGGCTCGCAAACCTTAAGGGCGCCGACGG 44356 29 96.6 32 ............................A AAAAATCGCACCCTCACCCCTCCGGGTGTGGG 44295 29 96.6 32 ............................A TCCTCCCGCGTAGTGACACACTGGGTCATGAG 44234 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ============================================================================================= ================== 16 29 96.4 36 GTTTTCCCCGCTCACGCGGGGATGAGCCG # Left flank : GTGAGGAGGCGTTTTCCCCGCTCACGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCGCTCACGCGGGGATGAGCCTACCCGGGGCGCATCGTCATCCCCTCTAGCTTTGTTTTCCCCGCTCACGCGGGGATGAGCCCCCGGACGAGTACGAGGTTGTGGAGTGCCCGGGGTTTTCCCCGCTCACGCGGGGATGAGCCCCCGAAAGGACAACCCCAATGAACACCAAGTCCGTTTTCCCCGCTCACGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCGCTCACGCGGGGATGAGCCCCGCAGCGACAGCCTCACCAACCTCGCGCTAGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTCCCCGCTCACGCGGGGATGAGCCTTTTTGCCCGCAGCGCCTCCAAATCCTGGCGGGGTTTTCCCCGCTCACGCGGGGATGAGCCAACCCCCCGCCGCCTCACCCCTCCGGGTGGGGTGTTTTCCCCGCTCACGCGGGGATGAGCCTCACACGCCCCAAAAACCTCACCTGGCCCTGCTGTTTTCCCCGCTCACGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCTCACGCGGGGATGAGCCGGCTATCGGCGACAGGGTAGACTGCTTGCGTCTGTTTTCCCCGCTCACGCGGGGATGAGCCGGGC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.31, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 8 45884-45367 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951494.1 Actinomyces graevenitzii F0530 Scaffold425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 45883 29 93.1 32 N...........................T AGTCGTTGTTAGCGTTTGCCACGCTTGAAATG 45822 29 96.6 32 ............................G AATACAGATCGTTTCGAGTGGTCGACAGGTGA 45761 29 96.6 32 ............................T CCGGATTTGCGCCTGTCGGCTGGTGAGGAGGC 45700 29 86.2 93 .........................NNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 45578 29 86.2 32 NNN.........................T ACCCGGGGCGCATCGTCATCCCCTCTAGCTTT 45517 29 100.0 32 ............................. CCGGACGAGTACGAGGTTGTGGAGTGCCCGGG 45456 29 100.0 32 ............................. CCGAAAGGACAACCCCAATGAACACCAAGTCC 45395 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ============================================================================================= ================== 8 29 94.0 41 GTTTTCCCCGCTCACGCGGGGATGAGCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCGCTCACGCGGGGATGAGCCGCGCCGTGCGCGTCGGCGGTCTGCTCGCTGATTGTTTTCCCCGCTCACGCGGGGATGAGCCTCTGGACGGCGTGCATCCGTATGCGACAGAGTCGTTTTCCCCGCTCACGCGGGGATGAGCCCTCGCATGCCCTCAGCGGGTAGGTCACCTACAGGTTTTCCCCGCTCACGCGGGGATGAGCCGGTTTTTAAACGCTTTTGAGAACTGTCTGGTGTGTTTTCCCCGCTCACGCGGGGATGAGCCCGCTTCCGCGCCGCTGTGCAAGCCGCATGGCAAGTTTTCCCCGCTCACGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCGCTCACGCGGGGATGAGCCCCGCAGCGACAGCCTCACCAACCTCGCGCTAGCGTTTTCCCCGCTCACGCGGGGATGAGCCGCAAAAGCAGGCGATTTGGCGGCGCAATTTGGTGTTTTCCCCGCTCACGCGGGGATGAGCCCTCGCATACCCTCGCTAGGTAGGTCACCCACTGGTTTTCCCCGCTCACGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCGCTCACGCGGGGATGAGCCCTGTCTGGTGTCTGCAATGACGCTTACCTTAACGTTTTCCCCGCTCACGCGGGGATGAGCCCCTCCCCCTGC # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.74, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 46314-45980 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951494.1 Actinomyces graevenitzii F0530 Scaffold425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46313 29 89.7 32 NN..........................G CGCCGTGCGCGTCGGCGGTCTGCTCGCTGATT 46252 29 96.6 32 ............................T CTGGACGGCGTGCATCCGTATGCGACAGAGTC 46191 29 100.0 32 ............................. TCGCATGCCCTCAGCGGGTAGGTCACCTACAG 46130 29 96.6 32 ............................G GTTTTTAAACGCTTTTGAGAACTGTCTGGTGT 46069 29 100.0 32 ............................. GCTTCCGCGCCGCTGTGCAAGCCGCATGGCAA 46008 29 89.7 0 ..........................NNN | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTTTTCCCCGCTCACGCGGGGATGAGCCC # Left flank : CTCGGTTTTCCCCGCTCACGCGGGGATGAGCCGCTCTTTTAGATCCTCGGCTGCCACGCCGGCCCGTTTTCCCCGCTCACGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCTCACGCGGGGATGAGCCTCCTTACCCGCCGGTTTCAGGTAGTAGGTGCATGTTTTCCCCGCTCACGCGGGGATGAGCCGGATGGGCAGCGCGCTGCTGTGGCTGGCGCGCTGTTTTCCCCGCTCACGCGGGGATGAGCCCCATTTTTCCAAGGATTTGTATGATCTAGAGAAGTTTTCCCCGCTCACGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCTCACGCGGGGATGAGCCTAGTCGTTGTTAGCGTTTGCCACGCTTGAAATGGTTTTCCCCGCTCACGCGGGGATGAGCCGAATACAGATCGTTTCGAGTGGTCGACAGGTGAGTTTTCCCCGCTCACGCGGGGATGAGCCTCCGGATTTGCGCCTGTCGGCTGGTGAGGAGGCGTTTTCCCCGCTCACGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCGCTCACGCGGGGATGAGCCTACCCGGGGCGCATCGTCATCCCCTCTAGCTTTGTTTTCCCCGCTCACGCGGGGATGAGCCCCCGGACGAG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 46411-46622 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951494.1 Actinomyces graevenitzii F0530 Scaffold425, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46411 29 93.1 32 N...........................T TCTCTAGATCATACAAATCCTTGGAAAAATGG 46472 29 100.0 32 ............................. GCGCGCCAGCCACAGCAGCGCGCTGCCCATCC 46533 29 100.0 32 ............................. TGCACCTACTACCTGAAACCGGCGGGTAAGGA 46594 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GGCTCATCCCCGCGTGAGCGGGGAAAACA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATCCCCGCGTGAGCGGGGAAAACTTGCCATGCGGCTTGCACAGCGGCGCGGAAGCGGGCTCATCCCCGCGTGAGCGGGGAAAACACACCAGACAGTTCTCAAAAGCGTTTAAAAACCGGCTCATCCCCGCGTGAGCGGGGAAAACCTGTAGGTGACCTACCCGCTGAGGGCATGCGAGGGCTCATCCCCGCGTGAGCGGGGAAAACGACTCTGTCGCATACGGATGCACGCCGTCCAGAGGCTCATCCCCGCGTGAGCGGGGAAAACAATCAGCGAGCAGACCGCCGACGCGCACGGCGCGGCTCATCCCCGCGTGAGCGGGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTCATCCCCGCGTGAGCGGGGAAAACGGGCCGGCGTGGCAGCCGAGGATCTAAAAGAGCGGCTCATCCCCGCGTGAGCGGGGAAAACCGAGACTGCGACGGCTCAGGGGCTTTTGCGTGAGGCTCATCCCCGCGTGAGCGGGGAAAACTCCTTAAGGCATACCTGGGGACATTCACGGATAGGCTCATCCCCGCGTGAGCGGGGAAAACTACCAGGCCGAACTGGGGATGATCCAGGAGCGAGGCTCATCCCCGCGTGAGCGGGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCATCCCCGCGTGAGCGGGGAAAACGGTT # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCATCCCCGCGTGAGCGGGGAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 11 46932-46720 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951494.1 Actinomyces graevenitzii F0530 Scaffold425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46931 29 100.0 32 ............................. ATCCGTGAATGTCCCCAGGTATGCCTTAAGGA 46870 29 100.0 32 ............................. CACGCAAAAGCCCCTGAGCCGTCGCAGTCTCG 46809 29 96.6 32 ............................G CTCTTTTAGATCCTCGGCTGCCACGCCGGCCC 46748 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTTTTCCCCGCTCACGCGGGGATGAGCCT # Left flank : CACGCATGAGTTTTCCCCGCTCACGCGGGGATGAGCCGTAACGCGAGGCGGTACGGGGCGGATAGTTATGGTTTTCCCCGCTCACGCGGGGATGAGCCTAGATACACGCAGAGAGGAGGTCTGAGCGTATGGTTTTCCCCGCTCACGCGGGGATGAGCCGAGCGGCGCTAACCTGCTCTGGCAGGGTATCCAGTTTTCCCCGCTCACGCGGGGATGAGCCCTAGTTGAGTTGGAGGCGCGCCGCCAGGAAATCGTTTTCCCCGCTCACGCGGGGATGAGCCGGGATCAGGGGCGCTTCTGACAGACTGCGAACCGTTTTCCCCGCTCACGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCGCTCACGCGGGGATGAGCCTCGCTCCTGGATCATCCCCAGTTCGGCCTGGTA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCTCACGCGGGGATGAGCCTCCTTACCCGCCGGTTTCAGGTAGTAGGTGCATGTTTTCCCCGCTCACGCGGGGATGAGCCGGATGGGCAGCGCGCTGCTGTGGCTGGCGCGCTGTTTTCCCCGCTCACGCGGGGATGAGCCCCATTTTTCCAAGGATTTGTATGATCTAGAGAAGTTTTCCCCGCTCACGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCGCTCACGCGGGGATGAGCCGCGCCGTGCGCGTCGGCGGTCTGCTCGCTGATTGTTTTCCCCGCTCACGCGGGGATGAGCCTCTGG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGAGCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 12 47850-47089 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951494.1 Actinomyces graevenitzii F0530 Scaffold425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47849 29 96.6 32 N............................ CGGGGTGGGGCGTAATGTCGATGTTTTCGACC 47788 29 100.0 32 ............................. CGACATTCCGGCTTGTATTCGCGTTGCGCACA 47727 29 100.0 32 ............................. TCAGCCCAGGTCAGAGCGGTTGCGGCCTTGGT 47666 29 96.6 32 ............................T CGCAAATTCGTTGTCAGTAGGGGGCGCTATCA 47605 29 96.6 32 ............................C AAGACTGCGAGCGCTGACGCGCCCCATTTCAC 47544 29 96.6 32 ............................C GGCATTACAGAACTACTTGAAAAGAACGGACT 47483 29 96.6 32 ............................T CGGCCCGTCCGTAAACGTATTTACACGCATGA 47422 29 100.0 32 ............................. TAACGCGAGGCGGTACGGGGCGGATAGTTATG 47361 29 96.6 32 ............................T AGATACACGCAGAGAGGAGGTCTGAGCGTATG 47300 29 100.0 32 ............................. AGCGGCGCTAACCTGCTCTGGCAGGGTATCCA 47239 29 96.6 32 ............................C TAGTTGAGTTGGAGGCGCGCCGCCAGGAAATC 47178 29 100.0 32 ............................. GGATCAGGGGCGCTTCTGACAGACTGCGAACC 47117 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.6 32 GTTTTCCCCGCTCACGCGGGGATGAGCCG # Left flank : TTTAAGTGCGTTTTCCCCGCTCACGCGGGGATGAGCCCGATTTCTTGACGGGTAGGGATCACGCTAGCAAGTTTTCCCCGCTCACGCGGGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCGCTCACGCGGGGATGAGCCTCTGCCACGGCGCTAGGTATCACCCGTAACGAAGTTTTCCCCGCTCACGCGGGGATGAGCCCCAAGCTTTACCAGCTTTACACCACAAAGTTTGGTTTTCCCCGCTCACGCGGGGATGAGCCCCGAAGTCGCATGCTCAAAATCATCAGCCTCAAGTTTTCCCCGCTCACGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCGCTCACGCGGGGATGAGCCTCGCTCCTGGATCATCCCCAGTTCGGCCTGGTAGTTTTCCCCGCTCACGCGGGGATGAGCCTATCCGTGAATGTCCCCAGGTATGCCTTAAGGAGTTTTCCCCGCTCACGCGGGGATGAGCCTCACGCAAAAGCCCCTGAGCCGTCGCAGTCTCGGTTTTCCCCGCTCACGCGGGGATGAGCCGCTCTTTTAGATCCTCGGCTGCCACGCCGGCCCGTTTTCCCCGCTCACGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCTCACGCGGGGATGAGCCTCCTT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 13 48098-47947 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951494.1 Actinomyces graevenitzii F0530 Scaffold425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48097 29 100.0 32 ............................. CAAGCTTTACCAGCTTTACACCACAAAGTTTG 48036 29 100.0 32 ............................. CGAAGTCGCATGCTCAAAATCATCAGCCTCAA 47975 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTTTTCCCCGCTCACGCGGGGATGAGCCC # Left flank : CGGTCAAATCGTTTTCCCCGCTCACGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTCCCCGCTCACGCGGGGATGAGCCTGTTGTTCTTAAGGAAGGCGGGGCCGTCGGGATGTTTTCCCCGCTCACGCGGGGATGAGCCGGGGTCCCATTGTTTGCCAGAATCTTTAAGTGCGTTTTCCCCGCTCACGCGGGGATGAGCCCGATTTCTTGACGGGTAGGGATCACGCTAGCAAGTTTTCCCCGCTCACGCGGGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCGCTCACGCGGGGATGAGCCTCTGCCACGGCGCTAGGTATCACCCGTAACGAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCTCACGCGGGGATGAGCCGCGGGGTGGGGCGTAATGTCGATGTTTTCGACCGTTTTCCCCGCTCACGCGGGGATGAGCCGCGACATTCCGGCTTGTATTCGCGTTGCGCACAGTTTTCCCCGCTCACGCGGGGATGAGCCGTCAGCCCAGGTCAGAGCGGTTGCGGCCTTGGTGTTTTCCCCGCTCACGCGGGGATGAGCCTCGCAAATTCGTTGTCAGTAGGGGGCGCTATCAGTTTTCCCCGCTCACGCGGGGATGAGCCCAAGACTGCGAGCGCTGACGCGCCCCATTTCACGTTTTCCCCGCTCACGCGGGGATGAGCCCGGCATTACAGAACTACTTGAAAAGAACGGACTGTTTTCCCCGCTCACGCGGGGATGAGCCTCGGCCCGT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 14 48463-48312 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951494.1 Actinomyces graevenitzii F0530 Scaffold425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48462 29 96.6 32 ............................T GTTGTTCTTAAGGAAGGCGGGGCCGTCGGGAT 48401 29 100.0 32 ............................. GGGTCCCATTGTTTGCCAGAATCTTTAAGTGC 48340 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTTTTCCCCGCTCACGCGGGGATGAGCCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCGCTCACGCGGGGATGAGCCGCCAGCCAGGGGTTCTACGCTGGCCACCTCTACGTTTTCCCCGCTCACGCGGGGATGAGCCGATCACGTAAGGGGGTTTTAAAACAAATGTTAGGTTTTCCCCGCTCACGCGGGGATGAGCCTACGTCCCCAACCGCAACACACATAGAAAGACAGTTTTCCCCGCTCACGCGGGGATGAGCCACATGTCCTATCTGTGTCGTTGTTATGTGTGTGGTTTTCCCCGCTCACGCGGGGATGAGCCTAAGTCATAGCTTAGCCGCGCGTCGGTCAAATCGTTTTCCCCGCTCACGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GATTTCTTGACGGGTAGGGATCACGCTAGCAAGTTTTCCCCGCTCACGCGGGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCGCTCACGCGGGGATGAGCCTCTGCCACGGCGCTAGGTATCACCCGTAACGAAGTTTTCCCCGCTCACGCGGGGATGAGCCCCAAGCTTTACCAGCTTTACACCACAAAGTTTGGTTTTCCCCGCTCACGCGGGGATGAGCCCCGAAGTCGCATGCTCAAAATCATCAGCCTCAAGTTTTCCCCGCTCACGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCTCACGCGGGGATGAGCCGCGGGGTGGG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 15 48893-48559 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951494.1 Actinomyces graevenitzii F0530 Scaffold425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48892 29 86.2 32 NNN.........................G CCAGCCAGGGGTTCTACGCTGGCCACCTCTAC 48831 29 96.6 32 ............................G ATCACGTAAGGGGGTTTTAAAACAAATGTTAG 48770 29 100.0 32 ............................. ACGTCCCCAACCGCAACACACATAGAAAGACA 48709 29 96.6 32 ............................A CATGTCCTATCTGTGTCGTTGTTATGTGTGTG 48648 29 100.0 32 ............................. AAGTCATAGCTTAGCCGCGCGTCGGTCAAATC 48587 29 86.2 0 .........................NNNN | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.3 32 GTTTTCCCCGCTCACGCGGGGATGAGCCT # Left flank : GTAGGCGCAGCTCTCAAGGCTTTCCAAAATCTGACCGATTTGGGGCGTAAAGCCCCAGTTCGCGAAGTGTTTTCCCCGCTCACGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCGCTCACGCGGGGATGAGCCCCATTCGGGGCTAAACGCCCTAAAATCAACCCAGTTTTCCCCGCTCACGCGGGGATGAGCCGTAGCAGCCGCTCAGCTCCGGGTTACGGTCCAGGTTTTCCCCGCTCACGCGGGGATGAGCCTACCCAGGACGCGTGGTTATCCCGTCTAGCTTCGTTTTCCCCGCTCACGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTCCCCGCTCACGCGGGGATGAGCCTGTTGTTCTTAAGGAAGGCGGGGCCGTCGGGATGTTTTCCCCGCTCACGCGGGGATGAGCCGGGGTCCCATTGTTTGCCAGAATCTTTAAGTGCGTTTTCCCCGCTCACGCGGGGATGAGCCCGATTTCTTGACGGGTAGGGATCACGCTAGCAAGTTTTCCCCGCTCACGCGGGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCGCTCACGCGGGGATGAGCCTCTGCCACGGCGCTAGGTATCACCCGTAACGAAGTTTTCCCCGCTCACGCGGGGATGAGCCCCAAGCTTTAC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGAGCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 16 49140-48989 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951494.1 Actinomyces graevenitzii F0530 Scaffold425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49139 29 100.0 32 ............................. TAGCAGCCGCTCAGCTCCGGGTTACGGTCCAG 49078 29 96.6 32 ............................T ACCCAGGACGCGTGGTTATCCCGTCTAGCTTC 49017 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTTTTCCCCGCTCACGCGGGGATGAGCCG # Left flank : CGTGTACGTGAGCGGCTATGGGATATAGTTGTTGCGAACCTAAAAACTGGGCGAGCAGTGATGGTGTATCGAGCCCGTAATGAGCAGGGTCTGGCCTTTCTGACCTGGGGTGATCCTTGGCAGCCGGTCGACTTCGAGGGGCTTACTTTGATGATGCGTCCTTACTACTCTGAGGGGCGCGGCCAGTATTCTGAGCCTGATCCCGCGAGTCGGTTGCGTAAGCGACCGGCAGTGAGTAAATTTCAGCGTAGGCGCAGCTCTCAAGGCTTTCCAAAATCTGACCGATTTGGGGCGTAAAGCCCCAGTTCGCGAAGTGTTTTCCCCGCTCACGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCGCTCACGCGGGGATGAGCCCCATTCGGGGCTAAACGCCCTAAAATCAACCCA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCGCTCACGCGGGGATGAGCCGCCAGCCAGGGGTTCTACGCTGGCCACCTCTACGTTTTCCCCGCTCACGCGGGGATGAGCCGATCACGTAAGGGGGTTTTAAAACAAATGTTAGGTTTTCCCCGCTCACGCGGGGATGAGCCTACGTCCCCAACCGCAACACACATAGAAAGACAGTTTTCCCCGCTCACGCGGGGATGAGCCACATGTCCTATCTGTGTCGTTGTTATGTGTGTGGTTTTCCCCGCTCACGCGGGGATGAGCCTAAGTCATAGCTTAGCCGCGCGTCGGTCAAATCGTTTTCCCCGCTCACGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //