Array 1 1223990-1224157 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021140.1 Eggerthella lenta strain C592 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================= ================== 1223990 34 100.0 33 .................................. AGCTGCATCTGGGGGTACATGAGGCATGCCGAC 1224057 34 97.1 33 ............C..................... CTCGAAACCTCCGCCCGATCTCTAGGGGCCGGC 1224124 34 97.1 0 ......T........................... | ========== ====== ====== ====== ================================== ================================= ================== 3 34 98.1 34 GTCGCACCCTCATGCAGGGCGCGGGGATTGAAAT # Left flank : GAGGGTCGCGGCAAGCTCAAGATGATGCGCATCTGGAACATCTACTGCTTCCTGTGCTGGTACGAAGTGTTCTTCGGGAAATCGAGCGAGCAGCTGAAGCCGAAGACGCAGGTGGCGTAAAGCGAGTACGTTGGGATGCGCGAACGCTCGCGCTCCTTCCTGCCTGCTCGTTCATCGGCTTTTTCCCTGCTCGTTGATTGCGGGGGAAGCTTTGGCTCTGGCGATGGTCGGGCAAAGTATCAAACGTCGACAATCTTTGTTCAGTAGGCACCCTTTTCGTTGCATTCGTGATGACGGCGGGGGCCTTCTTTGCGAAGAGCGGCGGCGAAGGATGCTGCAAGTTTGGCCGAGCGCGAATCGAAAGCGAACATGATCGATGCGGGAGGTTCGCACCCGATGCGGGATCGATTCGATCGTCGAGGTTAAGGCAGTGCGGTTGGCTACTTGCGCGGAATGCAAGATATTGTGCTCGATTCCTTCTCTATGCCATAATCATTGCG # Right flank : TATCGACTCGTAGTTGAGAACCTCCGTCGGCATCGGCCGGAGCGCGCGCTTCGCTGTGGGTGTACGGTTTCCACTCTTCGTGTGCAGCAAAAACGAGGTTTTGGCTGTCTTGACCGCTTGGGACGACGTGTTTTCGAGGTCGGGTGCCGTGTTTCCGGGGCGCGGTCGAGTGTCATCTGGGGTTTTGCCGCGGTGCCGTCTCGGGTGCGAGGACTCCTCGTGCCAAAACCTCGTTTTTGCTGCACATCGCCTTGTGAAAACGTGCGGCGGGGCATTTTTCAGGCAGCTGTGGGGGCGGGTTGGGCGCGAAACGGCTCCCATGACAATCGCAAGGCGGCTTCGACCTGCTTTGACGCGCCTTATCGCCTCATGCGGTCGTATGATCCCAGGTGACGAAATCCACGTGCGACCGTCGATACCCGACTCGACCGCCGAAACTGTCATAGGAGCCGTTTCGCGTCCAACCCGCCAACCGCCCGCCAACCCGCCAACCCGTCGAC # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCATGCAGGGCGCGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCATGCAGGGCGCGGGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.30,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1421169-1424757 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021140.1 Eggerthella lenta strain C592 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 1421169 33 100.0 36 ................................. GAGCGGGACTGCGCCGAGGCTGTCTACGACGCCAAC 1421238 33 100.0 32 ................................. CCAAGCAACAGGTCTCCCAAGCCGAGATCGAC 1421303 33 100.0 36 ................................. CAGCGGCGCTGGCATGGATTATTGCGACTTGGGCAC 1421372 33 100.0 33 ................................. CGAGGAGTTTCGCCCCTATCGCGATCCGTCCGC 1421438 33 100.0 35 ................................. TTCCTGCACGCAGAGGGCGGGCCGCGCACGTGGTG 1421506 33 100.0 33 ................................. TGCACACCCTTGCCGAAGATGCTCAGCATCGGG 1421572 33 100.0 35 ................................. ACGTTGACCTACGCTGAGAACATGCAGGACAATTC 1421640 33 100.0 34 ................................. TCGGCAAATCTGGGACGCTGGAAGCCGCTGAGGC 1421707 33 100.0 35 ................................. GAGCTCAAGCTCAAGAAGTGGCGCAAGCAGACCTC 1421775 33 100.0 36 ................................. CGGATCGTACAACACGGCAAGCGCGCTGTGGGGCGC 1421844 33 100.0 37 ................................. TTGCCGACGTGCTGGACGGCTACAACCGCACCCACGA 1421914 33 100.0 33 ................................. AGCCTCTTTTCGCTCGTCGCGTTCGTCGAGCTG 1421980 33 100.0 33 ................................. TAAACGAACTTGAACAGACGCATTTTGATAACC 1422046 33 100.0 32 ................................. GAGTTCGTTACCGACACGACCGGCCTCATCGG 1422111 33 100.0 34 ................................. GAGCTCGCCTGTGTACCCGTCGTTGGTGACGATG 1422178 33 100.0 34 ................................. ACGTTGCCCGGATCGAGCTTGAGCGCGCGCTCGA 1422245 33 100.0 34 ................................. ACGTTGACCTACGCTGAGAACATGCAGGACAATT 1422312 33 100.0 32 ................................. AGCCCTCGCTCGCAGCCTCGTAGCGAAGCCTG 1422377 33 100.0 34 ................................. AGCATCTCGAATTTCGCGGCGAGCGATTCGTTGC 1422444 33 100.0 35 ................................. AAGGCCGCCAACGCCAAGTACAGCCTGGAGGAGAC 1422512 33 97.0 33 ........T........................ AAAGCAGTCATCACAACGAGAGAAAGGGGCATC 1422578 33 100.0 34 ................................. ACGTCGTGTCTGAGCATCGACATCACAACGTCTT 1422645 33 100.0 32 ................................. ATTGCCGTTTTTCAAGGCTGGTAGCAAGCAAG 1422710 33 100.0 34 ................................. GTGCCGGCAGCTCCCGCAGCAGCGGCCCCTGCGG 1422777 33 100.0 33 ................................. AGGTACGCGCGCGCCCTTCTCGGTCTTGTAGTC 1422843 33 100.0 35 ................................. TCGACGACGGCCCTCACGTCGTCGATGGTGCGGCC 1422911 33 100.0 34 ................................. TATCACATGGAGCGGACGAGGTTCTCCGCGCGAG 1422978 33 100.0 34 ................................. ATCTTGGGCGTGCCGGGAGCGGGCAAGAGCTTCA 1423045 33 100.0 34 ................................. ATGGCGAGTACTTGGACGTAGTTGACGGTCGCCG 1423112 33 100.0 35 ................................. GACTTGGCGTCGGCCGCGGCGCCGGACAGCGCCTC 1423180 33 100.0 33 ................................. GACAACGCGATGGCCAAGGTATCGACCATCGCG 1423246 33 100.0 35 ................................. CGCTCGCAGCATAACGAAACGTTGGCTACAGCCGC 1423314 33 100.0 35 ................................. ACGCACTCGTAGACGTCGGCCGGGGTGTAGCAGTC 1423382 33 100.0 36 ................................. AATGAATCGATCAAGCGCGCCAACGGCGAACTCACC 1423451 33 100.0 34 ................................. GAAACCGTGCGCGACGGCGGAAGCAAGCTGGACG 1423518 33 100.0 33 ................................. CGCGCCACAGAAGGCGCACCTTGCGGGTATCGG 1423584 33 100.0 33 ................................. GGAGAAACATATAAAAAGGACGGTGTAATCTCG 1423650 33 100.0 35 ................................. CAGTTGATGTCTTTTCGCAGGTCGATGGCGCACGC 1423718 33 100.0 34 ................................. AAGCCGACGAATACGCCGGCGAACGCCATTCAGC 1423785 33 100.0 25 ................................. AGGCCCTGTCGGCCCGGTCGGCCCT Deletion [1423843] 1423843 33 90.9 34 ...GGC........................... ATGTCGGCCTTGGTGAACTCGGACAGGTCGAAGC 1423910 33 100.0 33 ................................. ATGCTACTAGACGATTTTTTTGTTCCGAAATTG 1423976 33 100.0 35 ................................. TAACAGACCGAAGCCCGTCCGGGCGGGTCGAATAC 1424044 33 100.0 35 ................................. CATGTGTTGCGTCCTACCGCGTCACTGATGATGCC 1424112 33 100.0 34 ................................. ATCGTGTGCGGGACGAACGACGACAAGCTGGACG 1424179 33 100.0 34 ................................. GAGGACGGTGTGGATCCATTACGACATCACCGGG 1424246 33 100.0 37 ................................. GAAAAGCTGCACCGGCGTGCCGACCGTGATGCCGTTA 1424316 33 100.0 36 ................................. GGCACTGACGTGAACGAAAGCGTCAAGGCTGCAAAC 1424385 33 100.0 33 ................................. CCCACCGCGATCACCCAGAACGTCGAGTACCTG 1424451 33 97.0 33 .............C................... ATGTCGGGGAAAAGGCGCGAACCCATGTAGGCG 1424517 33 100.0 38 ................................. CAGGTAGGCGTTGACGGCCTTGTCGTTGGCCTCGGCCA 1424588 33 90.9 36 ..T...T...................G...... GGCACCGCGGTGTACTCCGTGCTCGAGAACGCGCGG 1424657 32 93.9 34 ..............-.................C TGTTCGGGTTGGCTGGCAAGCTGAACGCTGACAC 1424723 33 75.8 0 .....GTT.A..T.....C.C..........G. | T,C [1424727,1424739] ========== ====== ====== ====== ================================= ====================================== ================== 54 33 99.0 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : TGCGCGGCGATCTAGATGGCTACCCGCCGTTTCTATGGAAGTGAGATGGTTGGCATGCTGACAGTGATTACCTACGACGTGAATACCGAGGATCCGGCGGGCCGACGTCGCTTGCGAAAAGTGGCGCGACATTGCGTCAATTACGGTCAGCGTGTCCAGAACTCAGTGTTCGAATGCGTTGCCGATGCTGCGACGATGGTTCGTATCAAGAGCGAGCTCGTCGAGCTGATCGATCCGGAGAAAGATAGTTTGCGATTCTACAGTCTTGGAAGCAAATATGAGACGAAGATTGAGCATGTAGGTGCGAAGCCAACGTACGAAGCTGAAGGGTTCTTGGCATTGTAGGACCATGGTGCGAGCACGAAGCTCGCATATGACATACGTGAGGTTCGCACCAAATAGTGTGACATAAAGATGCCTGACGCGCTTGTTGCGTGTACCTTGTTTGTCTAATGACACTATATGTTGATCGAAGCAGTAAATTTGCACATAATATTGCG # Right flank : TCGCGCGCAGCTGTCGTGGTACGGCCGAGGCGTGGTCGGTCGTACCCCTCGCGGGCGCGCGGGTAGAAGCAGGGTATCCGGGTTGAAATCGAGCAGCGTTTCGGCAGGTTCTGTCGCTCCCTAACGAAGGGGCGACCGATCCTTGCCGTCGCTTCCTATCGAGAACGCGGATTGATTCGCTGATTCCGAGTTTTGCTCGTCGGACGTCTGCGCCGAGTTGCGAAAGGCGCAGACGTCCTTCGGATCGCTACTCCACCACCAAATCAACGAACTCAAACGTCGTGCAGTCAACCAGGCCGCGGTTCGTCAGGCGCAGTTCGGGCAGGCATGCTAGCGGGATCAGGGCCATCGTCATGAACGGCGACGGCATGGTGCAGCCGATCTCGGCCCATGCGCCCTCCAAAGCATGTACCTTCTCGCTCATCGTTACGGCGTCGAGCGAGTCCATCAAACCGGCGATAGGAAGCTCCACCAACCCCAGGATCTCCCCGTCGGCGACC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //