Array 1 735-1442 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QQJX01000030.1 Neisseria meningitidis strain M28434 M28434_CHA3974A36_cleaned_ctg_14567, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                           	Insertion/Deletion
==========	======	======	======	====================================	==========================================	==================
       735	    36	  97.2	    30	........G...........................	GGACGGCGGTTCTAAAATATGAAAACTCAA            	
       801	    36	 100.0	    30	....................................	AAACTCAACGCATCTAACATAGTTCACACT            	
       867	    36	 100.0	    30	....................................	GGTCAGATTATAATAACGTTGAGCGCGTGT            	
       933	    36	 100.0	    30	....................................	TATCATGATGAGCATATTTATGAAGAGGTA            	
       999	    36	 100.0	    30	....................................	TAATTTGCGTTTCGTGTCGCTCATAAACCC            	
      1065	    36	 100.0	    30	....................................	CGTAACCGGCAAGGCTTATTTGTCCAACGA            	
      1131	    36	 100.0	    42	....................................	GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA	
      1209	    36	 100.0	    30	....................................	GGTCAGATTACAACAACGTTGAGCGTGTGT            	
      1275	    36	 100.0	    30	....................................	ACGAAGCAAAAGGAATGATTGAACACTACT            	
      1341	    36	 100.0	    30	....................................	TGCCGGCGTTATCGCGTTGTTTGATTTTAT            	
      1407	    36	 100.0	     0	....................................	|                                         	
==========	======	======	======	====================================	==========================================	==================
        11	    36	  99.7	    31	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                                          	       

# Left flank :   GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGAATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.68   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//