Array 1 763-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMVB010000072.1 Lactiplantibacillus plantarum strain 1001095A_150126_D1 NODE_349_length_34120_cov_46.4139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 762 36 100.0 30 .................................... AGATAGATACTAACAGCGGAATGTTGACAC 696 36 100.0 30 .................................... GCTTGAGGTTAAAAAGCATTCATATACTAA 630 36 100.0 30 .................................... ATACAATTGGTTTTGCTGAAATCCTTGCAC 564 36 100.0 29 .................................... AGGGAATAGGGGTACACGACGGTGTGTGT 499 36 100.0 30 .................................... AGATGCCCAACAATCTATGCCATATATCTT 433 36 100.0 30 .................................... AAAGGGGTTAATATAATATGCCAAGCTTAA 367 36 100.0 30 .................................... TCGGATAACTTAGCGGCGGCGTATCCCTGC 301 36 100.0 30 .................................... AGTATGCTGACGAGCATGTTACGATACCAG 235 36 100.0 30 .................................... TTGGGTTATTAATTGCATTAAGCACGGCGT 169 36 100.0 30 .................................... GGCCGGGTTAATCTTAATGTTTTATGTTCT 103 36 100.0 30 .................................... CAATCAGAAAGAAGATGACGACTATAATGC 37 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTGAACCGTCTTTTTCTAAAGAAAGTGCAGACCCAAATTATCAAGTTAATGGCTGATGATCGGCAAGTAGCGGTCTTAGATGAAAATCGTAAAGTAGTTTCGCAAGTAATGGAAGCCAGCTTCTTACTAGACTTACCGTTAGATGTTGACGAATCGCCTAGCCTAGAACAAATATTGAAGTTTACCGGTATTCACTTTCCGACGGAGCTTATGAATGACCCAAGGGCAATACTGGAGGCACTCGTTCAGACGCATGTTGAGCTGGGCTTGAAACAAAAACTGGTGTTGACTAATATCAGCCATTACTTAGATCAAAAACAATGGGCGAGCTTTGAGCAATTAGTGCATGATTTGGGCGCAACTGTCATTGTTATCGAATACTCAGAAATAAATCGAATGGAAAAGTTCAAAAATAGTTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATGAGTAAATGATGTTAAAATGCTG # Right flank : CG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1-367 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMVB010000080.1 Lactiplantibacillus plantarum strain 1001095A_150126_D1 NODE_394_length_71651_cov_45.5874, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 1 35 100.0 31 ................................... CGTTGCAACTTTATCCTTGTCACTTTCAACA 67 35 100.0 31 ................................... CGTGACGTGCTCCCATGTGACCCGAATTGAC 133 35 100.0 31 ................................... CCGACTCTAATGGATATTTTCAATCATAGCA 199 35 97.1 31 ........................T.......... CGATGGTGCTGTTGCACGTGATCCCGCGCTT 265 35 97.1 31 .......................G........... TAGCATAATGTATTATGTAACATATTATGTT 331 35 77.1 0 ..........ACG.C..C.........T..C.C.. | AA [352] ========== ====== ====== ====== =================================== =============================== ================== 6 35 95.2 31 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAA # Left flank : | # Right flank : ATACTAAAAAAGGCTCACCAACTAAAACAGGTTGGTGAGCCTTTTCGATTTATTGACTAATTACTAATCAATCACGCCATCTTTTCCCATCCATCGGAACCGAATAAACTTCCCGACCTCGGTCACAATCAAGACGACGATCCCACAGATAATCGGGATGCCCCAACCATACCAGAAGTTGATGCTAGTCGTATGGAAGACGGATTGCATGAATGGTAGGTAAATGATTCCCAGTTGTAAGAGAATCAGAATACCAATGATGTAGAACGCCATCTTATTTTGGAAGAAGTACTTGGAAATGACGGGGTGGTCATTCCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATGGTACTACCGACGACATTTGGTAATCCAAGTGCGGTCAAGTAGTTGTAGGCGAAGATCCCCAAGCCAGAAATTAGGAAGGAGACATAGCCGATTTCAAAGTAATCTAATTTTGACAACAACCCAGACTTAA # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //