Array 1 1-1735 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNA01000037.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N51262 N51262_contig_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... AACTTAACTCCAGCATTCTGGCAATTGTTGCG 60 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 121 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 182 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 243 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 304 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 365 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 426 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 487 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 548 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 609 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 670 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 731 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 792 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 853 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 914 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 975 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 1036 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1097 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1158 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1219 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1280 29 100.0 32 ............................. CCAGCTTACACTATTTACGACGTTATTGAGCA 1341 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1402 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1463 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1524 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1585 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1646 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1707 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCGCCAGCGGGGATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16758-16969 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNA01000020.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N51262 N51262_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16758 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 16819 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 16880 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 16941 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1371 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNA01000038.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N51262 N51262_contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 27 93.1 32 --........................... GCCCGAAATCAACTTGCAACATTTCAGTTGGC 60 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 121 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 182 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 243 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 304 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 365 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 426 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 487 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 548 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 609 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 670 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 731 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 793 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 855 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 916 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 977 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 1038 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 1099 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 1160 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 1221 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 1282 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 1343 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTATGATTTGGACATAGCTAATGATGTAAAGTGTGTTCCCCGCGCCAGCGGGGATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //