Array 1 457-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZQ01000036.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N42458 N42458_contig_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 456 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 395 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 334 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 273 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 212 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 151 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 90 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11000-10298 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZQ01000017.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N42458 N42458_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10999 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 10937 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 10876 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 10815 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 10754 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 10693 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 10632 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 10571 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 10510 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 10449 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 10388 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 10327 29 96.6 0 ............T................ | A [10300] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28324-27259 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZQ01000017.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N42458 N42458_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28323 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 28262 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 28201 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 28140 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 28079 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 28018 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 27957 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 27896 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 27835 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 27774 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 27713 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 27652 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 27591 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 27530 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 27469 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 27408 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 27347 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 27286 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGCCGTGGAAAGAACCAGAACGCTGGATATTGG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //