Array 1 2174631-2175200 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIVH010000001.1 Paenibacillus elgii strain SWL-W8 Contig00001, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2174631 30 90.0 37 A......T............T......... AGTTCAATTTTAATATGGAGCAAAGTTTGACTCGAAT 2174698 30 100.0 37 .............................. AATGTGGTGGAGACTGGCATGAGCCAAGAGGAACGCA 2174765 30 100.0 37 .............................. CAGATTTTTGGTTTTATGTTTCCCTCCAAGATACGTG 2174832 30 100.0 39 .............................. ACCGAAAAAGGAGGACAAACAAATGAGAGAAGGAATCAC 2174901 30 96.7 37 .......T...................... TAAACGATCAGAAAGACGATATGCGAGAAGGAGAACG 2174968 30 96.7 38 .......T...................... CCGGTCTGCTGTGATGCCGTTTGCCCATGCCATTCGCT 2175036 30 93.3 38 .......T....T................. TGTTATGCCCTCTTTAGGCCCATGAACGGCAATGACAG 2175104 30 100.0 37 .............................. GAAATCGAAGCCAAAACGGATGATATCCCAGAGCCTG 2175171 30 96.7 0 .......T...................... | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 97.0 38 GTTTCAAATCCTCATAGGTACGTTCAAAAC # Left flank : CCAGGGCTGCTGAGAAAAAAATGGGCTGGCTTTTTATTCATCTTTTAATTTGTATTGTTAAGCTTTTGATCTCTATAACGTTTATTATGAACCTCGATTTACAAAAATACGGGAGGTTGTTGCTTAAAAAACTTTGAACATCAAATGGTCAATATTTGGAGACCTAAAACGTGGAGGAGATATGTTTCAAGAATTAAAAAAGCTCATCATAGACCTAGGTTATATTCAAGCTATTTGGGATACTGAGGCTAAAAAGAAACAAGATGAATCCGAAAAAATGTATGCAACTGGAGTAAGCGATGGCTTTAAACATGCCGCAGTTGCTCTAGACTCGATTATCCGAAAATACTCAACTTAATATCCATAGTGACCCATGAGCGACAGCCTTGGGTCTCTTGTCTTTACATAAGCCGCTACAGCGTTTAAGAATGTTTCAAAATTCCTACCATGGGGACATTCCAAACGGAAATTAAGCGCTATCCTAGGTTTGATATTTTAGA # Right flank : CCCATAAAAAACCCTGCCACTACGCCATTCCTGCATATCCCATAATTTCGTTTTTCCAATGGCTAACGTCACAATCCTTTTCGCTACGCGGCTATCCTTGTCGTCGATCCCCCGGCTTTTTTGCAGCATTGGGGGTCGACGACAAAATGAACATAGCTAAATTATAATGATTTGCCCTCTTTTTTCCAAGCTCTTAAAATTATTTACCTATAGCATATTGTAACTTGAATAGACTTTAAAGGAAATAAACAACACAATCCTTTGTTGAGTGAACCCCGATTATGTCTGAAATTAGAAGCGAAACAAACTACGTGGAGTTTAAAGCATAAATGGAGTGAGCCATAATAAACAGCTTTTTACCTTTATTTTAACCGAGTTTTTTCTATTTTATAGTTGCTAGTATAATTTCAATCATGATATGTTCAATTAGGAGAATCGTGCGCTAACATGGGTCTCAAGAACAATATCCGCTCAAGGGCGACGTGTTTTGAGAAACGGAA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTCATAGGTACGTTCAAAAC # Alternate repeat : GTTTCAATTCCTCATAGGTACGTTCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 2182967-2183468 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIVH010000001.1 Paenibacillus elgii strain SWL-W8 Contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2182967 30 96.7 38 ......A....................... ATAATCTGATTGGCCAAAATCGCACTCCCTACGATAAG 2183035 30 100.0 36 .............................. TGTGGTGCCGGAGGTCCGAACCCACCCCCCGGGGGT 2183101 30 100.0 38 .............................. CAATATTGATCGTAACATCGTCATCCAACGAACACCCA 2183169 30 100.0 39 .............................. TGTTAAGATTGGGTGAGAGGGCCGGGTGCATCCGACCCT 2183238 30 100.0 36 .............................. CGGTGCGACATACAATTTGCTCGTTCGGGGCACCCT 2183304 30 100.0 35 .............................. AATACAGAAATACAAGGAATAGGCGGTGTATATGG 2183369 30 96.7 38 ......A....................... TGCGCGAGTCTGATCTTGGATATCGCCCGGTTGAAGAT 2183437 30 90.0 0 ......A.....................GT | GA [2183457] ========== ====== ====== ====== ============================== ======================================= ================== 8 30 97.9 37 GTTTTGCACGTACCTATGAGGAATTGAAAC # Left flank : AAGAGTATATGAGAAAGTTATCATTTGAAGATCGAAAGCAATTTATGATTTTATTTAACTATTACGTGTTGAACATACCGCAGAAAAAGGCATTGAGATTGGTAGGTGAGGAACAATTTCTGAAACACCATATTCCCATTCTTCAGGGGACAGACGCTTACGATTCACAAGTTGGGCTTCGTTCGTTGTTTGAGTTGACCGATGGTTTTATTTAGTTCCGGGTGCTAAGGACAAAATTATTCGAAAGACGATGAGGACTCGGTTATTTTCTATACTTGGCGTAATCAGAAGGACTTGGACCGGGAGATCATGGGGTTGGAAAAAGGTGGGCAAAGCCTTATAATTTAACTATGTTTTTTGTCGTCGACCTCTAATGCTGCAAAAAAGCCCGGGGGTCGACGACAACGATAGTTGCGCGGTAGAAGGGATTGCGGCGTTAGCTGTTGGAGATACGAAATTATAGGATATGCGGGAATGGCGTAGTAGAGGCACTTTTACGG # Right flank : TTGAGCTATCAATAAAAGCGCACATTCCTCCTAGAATGTACGCTTTAATGAAAACATGGTTTTAGAGTGATGAATAGTATGCTATGATCAGTCCCTTCTCATTTGTTTTTTCATCTCTTGTCGAAATCATAAATCTCAGCAAGAATCAGATAAATGATTCCAGCGATTAGAGTGATTATACTGTAAGTGGTTAAATTTCCCCCAACATAATCTAACCGTTGTTTGAAAGAATCTGCATCATAAAAACTGTTAGGTGATGATGTTGAATAGATCGATGCAGTTATGTATTTGACTCCTGTAAGAAAAGCAGAAATAGCTATAAGAATAACCCCAGCCGCTCTCCTGCTCATATTCATCACTTCCTTTCCTTATTACGTAATGATACCATAATATACCAAGATCCTCCCGTAACGCACGAATGATTCCAAATATCAAAATACGTTTATGTAAACATTGGGAAAGCCTGAATCTGATGAAACCCGTCGTCAATGCCGGTGTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCACGTACCTATGAGGAATTGAAAC # Alternate repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 2188930-2189826 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIVH010000001.1 Paenibacillus elgii strain SWL-W8 Contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2188930 30 100.0 35 .............................. TCTGCATTTGCGTTTTGGTTCATATGCTTCTCCTT 2188995 30 100.0 36 .............................. CTTGGAGTCCAATTATGGAAGTGCGACGCCGGGGAA 2189061 30 100.0 37 .............................. TATCAGTATGAGTGGGCACAGCCTATGTCCATGCCGC 2189128 30 96.7 39 .................A............ ACTTCAATAAACGCGGCAAGCTAACTCGCGAAGCCGAAG 2189197 30 100.0 38 .............................. AGAGAATTCGGGTTTCGACCTCTCGAAATTCGGCGTTC 2189265 30 100.0 36 .............................. TGTGAATGGGCAATTGATCACAATCACGCCGGACAA 2189331 30 100.0 35 .............................. ACAGATGCCCGGCCTAGATCACCTGCCAGACATTT 2189396 30 100.0 36 .............................. TACCGCAGTGTTATCGGAGTTAAAAACTGTACGGGC 2189462 30 100.0 37 .............................. AATAAATTCCTTTTTGTCCTGGTCGTCAGCGCTATCC 2189529 30 100.0 36 .............................. ACCCTCGTTTCTCCTCACTCCTTCCTACCCACTACC 2189595 30 100.0 37 .............................. TCAGTCGGTACATAAAGAATCTATAGAGGACTTCTAC 2189662 30 100.0 36 .............................. TCGTTTTTAACGAGGATAATACAGTCTCAGTGCAGC 2189728 30 100.0 39 .............................. AGCAGCAGCATGTATCCTTCGTATGGACCAGGGGAAAAC 2189797 30 90.0 0 ....A............A...........T | ========== ====== ====== ====== ============================== ======================================= ================== 14 30 99.0 37 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : TGCGATCCCACAGGCTTGGGTAATTTCCTCGACCGTAACGTTATCGAAGCCTTTTTCTTTAAACAGCTTTATGGCATGTGTGAAAATACGCTCTTTCAGTTCTTGCTTTCGGGATGCTCTAAGCATTGAGGAGGGTCACCGCCTTTTTTTGAAAAAAAATGACTACGGTCATAAAATGACTTTGGTCATGATTTTACTCCTGTTTTTGGTAATGTTCAAGTATCAAAAAAGTTACGAAGTATTCAAAGCTTGTGGTAAGGTAGAAGTGCGAGGCATTTTTGTAATGATTGCACATTAAATTCAGGTGACTATAGGTTGGAAAAAGGTGGACAAACGCTTATAATTTAACTACGCTGTTTGTCGTCGACCCCCAATGATGCAAAAAAGCCGGGGGATCGACGACAAGGATAACTGCGCGGCAAAAGGGATTACGGTGTTTGCTGGACTCGATACGTAATTCTTGAATATGCAGGAATGGCTTATTGGCGGGATTTTGATGG # Right flank : TCTATCCGTTCATCCAATTCCGGATCATTCAGTACTTTGGAAACAATTTTCGAGAAGTTCTGGAATCTAAAATTCCCACTTCACTACTAACCGGCGAACATAGAAACCCGCTAACCGGGGATCTGCCTTGACTTACCTAACAAAAACGTACCCGCAAATTCACTTAAAAAACCTCGATTTCGTTCGAATTGATATCGTAAAGCTCCTGTGAAATCCCTCATGCGCAAAAGTAGTGTATTGCCGCCAATTGGCGGCTTTTTACTGCTAGAGTCCCGGCATATGTGGAGTGAAACCGGGACATACGTACTAGGTCGGGTAGAATAGGTAGTTGTCTGTTCGTATTTTCACAAAAAAAAGGGGAACAAAAAGAAACTGCATGATATAATGACACTATTCATACCAAAATTTGTTGCCCTCGAAGGGTGACAAAGCTTTGCTGACAGGAGGCGAAGGGGTGCAAATCTATTTCAGAGTCAAAGCGGCCGGCAAAAGGCGTCCGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 2218263-2218563 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIVH010000001.1 Paenibacillus elgii strain SWL-W8 Contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2218263 30 100.0 36 .............................. GAATTTACGTCAACCGATGACTGCTGATAGTTTGGG 2218329 30 100.0 37 .............................. GAAGCCCGTACTATTGGTGCAGCCGCAGGAAGGCAAA 2218396 30 100.0 37 .............................. CTGCCATTGCTGCAGGGCGCCGGCCGATCTATGCGCC 2218463 30 100.0 38 .............................. TCACATTTTTCATGCCATAGTGTACGAAGCTAAATTGG 2218531 30 90.0 0 ......................G.AT.... | TAA [2218545] ========== ====== ====== ====== ============================== ====================================== ================== 5 30 98.0 37 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : AGTCGCTGCTGGCCGCGATACCGGTTCCCGATCCGAAGGTGGAATCGAAGAAGACGTTTACCGCTGTAGAAGAGTCCTCGAAGGCGGACCCGTACGGCTTGGAGCGCACAAGCTTCGTTGAGGTGAAGAAGGGGCATTGGGTGGCGGTTGCTGAGGGGTAGGGTTAGATGAGGGTTTGGGGGAGCGGTAAGGGAGTTAAGAGTCGGTTCCGTCCGCTGTGCTCGGCTGCTGGAAGAGATTGAAGACGAGGATATTAAAGAGGTAAAATTAGCTTAAGCCATAGGAATAATCTAAAGCCTCAGAGTTTAATTCCGTTGGAAAAAAACGGGCAAAGTTGTATAATGTAACTGCGCCTTTGTGTCGTCGACCTCCAATGCTGTAAAAAAGCCGGGGGATCGACGACAACGAAGGCCGCGCGGGTAAAGAGATTTTGGTACTGGCGTGAGGGAGAAATTGTATTTTTAATATGTGAGAATGGCGTAACGGCGGCGTTTTTACGG # Right flank : CCTTGTGACATAATGAACTGCGGAAGCCTTGATTTATAAGGTTTTTTTACAAGGGAGAAACCGTCCCGTCTTTGTTTTGGGGACGTCCTCTATATAGAAGAAGGGCGGCGTTCGATTCCATTGTTTTTGTGACGTGGCTGTATGTCGTTGTCAGGGTGCGTTCGCCAGAGTGCCCCAGACGTTCGGCTACAGCCTTTGTCGTCAGTCCTTGTTCAAGCAGAAACGTTGCCGACGTATGGCGAAGGCCGTGGAGCTTCACGTGCCGAAATCCATTTGCTTTCAGGAACTTGCGCCACCAATTTGTCGGAGTGTTTGGGTGATATGGAATACCGTCGCCTTTGTGAAACAGGAATTGACGCCCTTCGGGGGCCTCCCATTTCGTTCCCGCATCCCATCTCTGCTTTTTCCACGTTTTTGTGGAATAGATTTCCAACTCTTTCATGTACCAAGCTGGCATTTTGATTGTTCTCATAGAGTCCTCGTTTTTCGGGGCTTTGATA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //