Array 1 110789-107890 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDJT01000002.1 Salmonella enterica strain SC103 103...scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 110788 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 110727 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 110666 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 110605 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 110544 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 110483 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 110422 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 110361 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 110300 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 110239 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 110178 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 110117 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 110056 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 109995 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 109934 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 109873 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 109812 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 109751 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 109690 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 109629 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 109568 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 109507 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 109446 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 109385 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 109324 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 109263 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 109202 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 109141 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 109080 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 109019 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 108958 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 108897 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 108836 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 108774 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 108713 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 108652 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 108591 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 108530 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 108469 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 108408 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 108347 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 108285 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 108224 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 108163 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 108102 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 108041 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 107980 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 107919 29 100.0 0 ............................. | A [107892] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129326-127346 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDJT01000002.1 Salmonella enterica strain SC103 103...scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129325 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 129264 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 129203 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 129142 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 129081 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 129020 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 128959 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 128898 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 128837 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 128776 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 128715 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 128654 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 128593 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 128532 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 128471 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 128410 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 128349 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 128288 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 128227 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 128166 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 128105 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 128044 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 127983 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 127922 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 127861 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 127800 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 127739 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 127678 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 127617 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 127556 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 127495 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 127434 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 127373 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //