Array 1 634-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCEL01000316.1 Serratia marcescens strain EL95 contig316, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 633 29 100.0 32 ............................. TTGAAGTAACTTATAGTGATGAGGGTGACCAC 572 29 100.0 32 ............................. GCGCCGTCCGGGATAATCGGTTCTACGTTGAA 511 29 100.0 32 ............................. TCGTCGGCGCTGACCGTGCGCTTTTCCTTTTT 450 29 100.0 32 ............................. GATTGGTTCGAGCCATCCCGAACCGTTGAAAA 389 29 100.0 32 ............................. AACAGGCTAACTTCACCGTGCTCAACACAGTA 328 29 100.0 32 ............................. GGCATGTGGGAGTTTCCGCGTATTAACCAGGG 267 29 100.0 32 ............................. CATGTTGCATAGATAGTGCTTGACTTTGTTTT 206 29 100.0 32 ............................. CGCTCGGTGATTGGGTTCATCTCGATGGTGCC 145 29 100.0 32 ............................. AGCGTCGCAAAGGCGACGGATGTTCTTCAGTG 84 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCGCGCCAGCGGGGATAAACCGAACTGGCCGCATTTGGGTTAACGCCCGAGGA # Right flank : GTAAACCGCGCACGCGGCGCCGCAGATCAGATGGTGTTCCCCGCGCCAGCGGGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9295-8471 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCEL01000246.1 Serratia marcescens strain EL95 contig246, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9294 29 100.0 32 ............................. TGTCTCGCACCGTTTCCACTATTACCCCAGCA 9233 29 100.0 32 ............................. CTATTACCGGCCAGACATCAACAATAATTTGG 9172 29 100.0 32 ............................. AGCTTAAACCGGATGCCCGCACTTCACTGCAA 9111 29 100.0 32 ............................. CCGGCGCGACCGATCAGCTGGTTGGAGATTGG 9050 29 100.0 33 ............................. ACAGCTTACCGGTCACATCAGCGTTTTTGCGGC 8988 29 96.6 32 ............................T GGAGACAGACGCAGAGCTACGCCAGCGTCAGG 8927 29 100.0 32 ............................. TGGGCATGGAGCAATAACCCGGCGTGGATTTG 8866 29 100.0 32 ............................. CCGGCGCGACCGATCAGCTGGTTGGAGATTGG 8805 29 100.0 32 ............................. ATACTATAATCAGCTGGGTCAAGCCCTTTCCC 8744 29 100.0 32 ............................. TTCATGACCCAAATGCGCGGGCTGGCGAATCT 8683 29 100.0 33 ............................. CGCCACGCCCGGCTTGCCGTAGATGCGTATTGC 8621 29 100.0 32 ............................. CCATCCAGGCAGAGACAGTGCTGTATGAGGCC 8560 29 96.6 32 .............T............... TAACCCCAATGCCACTGCGGATCCGCCAAACA 8499 29 86.2 0 ...............A........G..TC | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCAGCCCGGTAGACGTGGCCGGCGAAGACCGCCAATGGGTGGCGCTGGCGCCGCTGGCGGTTGACGAAAGCCTGCGCCGTCAGGGGCTGGCTGAAAAGCTGGTGTACGAAGGCTTGGACTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCGGCCTATTACGGCCGCTTCGGTTTCAAACCGGCCGCTGCCTATGGCCTGCACTGCCGCTGGCCGGACACGGAAAGCGCATTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAACAGGTTTTAGTTTTTAATGTATTGATAATTAAATTCTATTTGGTGAACGGGAAATTCGCCAAGAATGTGTTTTGAAATTTGATTATAAATCAATTGGTTGTGTTTTCTAGAGAGTCGAAATTATTTGGTAGAATTTGAGGTCTTTAAAAATACATTTTAATTCAATAACATACTCTAAGA # Right flank : CAGAGCTTCACTGCCGCACAGGCAGTTCGAATATGAGGGATAAAACTTTACCGACACCTGTTAACGGGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAGCTCCCCTTTGCCGCGCAGCGCCTTGGCACCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATATAGAGATACCAGTGGGGTAAGTCCATCATTGGGGTCCTGTGCAAGGGTAGAGATGACATCAGGCCGCCATAGCTAAGCGCGGCATCTCTATTTTGTCACGATTTAACGATGGATTTCACCACTGGCGGAACGGTTTGTTTATTCCGTCTTGACGATAAGGGATTATTTTACACCCACGGTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //