Array 1 5054-6179 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNK01000067.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N30678 SEEH0678_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5054 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 5115 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 5176 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 5237 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5298 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5359 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5420 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5481 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5542 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5603 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5664 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5725 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5786 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5847 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 5908 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 5969 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6030 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6091 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6152 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22435-24098 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNK01000067.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N30678 SEEH0678_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 22435 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 22496 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 22557 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 22618 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 22685 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 22746 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 22807 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 22868 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 22929 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 22990 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23051 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23112 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 23173 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 23234 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23295 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 23356 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 23417 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 23478 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 23539 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 23642 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 23703 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 23764 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 23825 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 23886 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 23947 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 24008 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 24069 29 96.6 0 A............................ | A [24095] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //