Array 1 143918-143222 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAJHNV010000004.1 Clostridium perfringens strain P146 CP146-S5-103121_contig_4, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    143917	    36	  86.1	    30	A...ACA...A.........................	TAAAGAACCTAAGGTAAAACCTAAAACAAA 	A,A [143903,143909]
    143849	    36	 100.0	    31	....................................	CATACAATAATAGACTGTAATAGTTCCGCAA	
    143782	    36	 100.0	    30	....................................	ATAGAAAAAAATGCTACTAACATAGATAAA 	
    143716	    36	 100.0	    29	....................................	ACAGCTGCTAGAGTATTGGCTCAAAATGG  	
    143651	    36	 100.0	    28	....................................	AGAGCATATAGAAGTTATCGAGGAGGAA   	
    143587	    36	 100.0	    30	....................................	CAGGAATGCAGAGTTTATGTAATTTTATCT 	
    143521	    36	 100.0	    30	....................................	TCTTATATTAACCAATACTTCGATGTTGAA 	
    143455	    36	 100.0	    30	....................................	AACATTTACCATTGATCCTCCTAATGCAAC 	
    143389	    36	 100.0	    30	....................................	TTTTTTCAGGTTCTCATCCTGCGCAAAGAA 	
    143323	    36	 100.0	    30	....................................	TGATAAGTATATTAATCCTAAGAAGATTTT 	
    143257	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        11	    36	  98.7	    30	GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT	                               	       

# Left flank :   AGTTTCTAAAAGCAGCAAGTCTATCCTTATTTTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCCCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATAATATTTAGTATAAAAAGCATTGTTCTCATTTAACTTAATAAGCTCAACACCATCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTCTCATCATACCAAAAAACAATATGACGTACTTTTCCATCACTTAATGGCTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAAATTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA
# Right flank :  AGGAAGTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAAAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCAT

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,-0.20] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [68.3-96.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,4.77   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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