Array 1 53-855 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXAO01000108.1 Moraxella atlantae strain CCUG 6415 CCUG_6415T_0000108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 53 36 100.0 35 .................................... TATGCAGCAATATAATAGTTATCGCCGCGGTCTGT 124 36 100.0 33 .................................... ATCTGCGATACTTTCATCAAAGTAGCCGCAAAC 193 36 100.0 33 .................................... ATCTTTAAAACCGAGTATTTAACTCGCATCTTA 262 36 100.0 34 .................................... AGTTTAATTACTAACTCGTGGGTTGGTAATTTGC 332 36 100.0 34 .................................... TCTGGTACATCAATTTCATACATCACCTGCTGAT 402 36 100.0 35 .................................... TCAAGGCTACGGCCTTGGCACGAGCTTGGGCTTTG 473 36 100.0 33 .................................... AAACTGTAGATGAGTTTGTCATCTACAGTAAAG 542 36 100.0 34 .................................... TTAGAAGGAGCCTGTATTTGTTCGAAACCTCTTA 612 36 100.0 34 .................................... GCTGCTAAGTTTAAGCTTGGTGAAGGGGTTAAGG 682 36 100.0 33 .................................... TAACTCCAATGAAGAAAGTACGACGGAGTAAAG 751 36 100.0 33 .................................... ATCACTTGATAGAAGTAGTGAGCAAACTGTTCA 820 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 12 36 100.0 34 GTTCAAAGCCTTCCCCGATTCCTAGGGGATTAAGAC # Left flank : TTCCTAGGGGATTAAGACGCCTCATTATCATCTTCAGTGTAAGAAATTTGAGG # Right flank : GTACATGCTCATCTCCTCTTTTTTCATAGTTAGAGTTCAAAGCCTTCCCCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAAGCCTTCCCCGATTCCTAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 65984-65535 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXAO01000015.1 Moraxella atlantae strain CCUG 6415 CCUG_6415T_0000015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 65983 29 100.0 31 ............................. GTTGCATATGCCATACACTCAGATTTTGGTA 65923 29 100.0 31 ............................. GGTCTATCATGCCATCGCACCCACGCGCACG 65863 29 96.6 31 ............................T ACTAATATGGGATAAGGGCAATGTTACACCC 65803 29 100.0 31 ............................. ATCTCACCAATGATAAAGGCGGCTAACATCG 65743 29 96.6 31 ............................T TTTGCTGTGGTGGTCTTGAGTTTGTCGCGCA 65683 29 100.0 31 ............................. CCGCCAAAATGAACATAACGCAGACATTATG 65623 29 100.0 31 ............................. TTTGAGTAGCTAAATAACGTTCTATACCATA 65563 29 82.8 0 A..C......A.G...............T | ========== ====== ====== ====== ============================= =============================== ================== 8 29 97.0 31 CTTTACCGCCGCATAGGCGGCTTAGAAAA # Left flank : GCTGGTCGATTATGTGCATTTGTCGTCCATCAAAGAAGTGGGTGATAAAGCGACTGGCAATGTCGTGGTCAGACGTTATCGTTATAAGGATTTTGACAAAAAAGTGACAGCATTTGCCCAATTTAAAGGTATTAGCCAAAAAGCGGCGTTAGCGCATTGCCGAACGCATAAACGCCCTATCAAACGCTATCCGTTTATTACCTTAAAAAGTGAAACCAATCACTCTGATTTTAAATTATCGATTTGGCAGGAGGCAACTCAACACCCCAAAACAGGGGGATTTAATACGTATGGAATCAATAATCAGTCCAATAACGTGACTGTTCCGCATTGGTAATCAACAAAGCAAGCAAAAATAAGGGTGAATAACCCTTATTTTTTACTCTATAAAAAAATGTTTAAATTTCAATAATTTATGGCAGGGTGGAATCGGTAGGGTAAAAAAGGGTTTTTTACTTGGTAAGCCTTGTTATGACTGGCTTTTTTGCGTTATAATTCTA # Right flank : AGTACCTTATTGCTGGCTTTAAGTGCTTTATTTAAGTGGTTGCTAGGTTTTTACCATTGGCATTGAATATCACAACCGCACGATCAAACATCGAGTAAGGCAAGCAATTAGGCAAAATTGTAACTTCTCCAAAAACTGGAAAATCACTTTACAGTCTTTGCGTTAGCATTTTTTTACATTGATAACGGCTGTGTTTGATGTCGGCATGGTTTTAAAAGCACCACAAAAAAGACGGCTCGTTGCCTAACCGTTTTTTAAAAAAAATTATTCGTATCACCAAAGCTATTTAGCGCGGCTTATTGCGGCGTAGATGGTTACTGCGTCGCGCTTTGAGCGGTTTTTGCTGCTGGCGTTCTTGCCGACGTTTGGCAATGCCATACAACCCTGTGCCTTGACGTGGGCGCAGACCGACTAAGTTTGCCAAGCGGTCAATCTCGCTGCGGTCAAGCTCTAGATATCGCCCTGTGCGCAGCTCGCGCGGTAGGCTAACGGTACCATAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGCCGCATAGGCGGCTTAGAAAA # Alternate repeat : CTTTACCGCCGCATAGGCGGCTTAGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 71483-69006 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXAO01000060.1 Moraxella atlantae strain CCUG 6415 CCUG_6415T_0000060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 71482 36 100.0 34 .................................... CTTATGTATTAAGGATAGAGGATGATTGTGTTTT 71412 36 100.0 36 .................................... CTAATATTGTGACAGGGTTGATAAAAGCTTCTCAGA 71340 36 100.0 35 .................................... TTCTGAACCACATCCAGAACGAAGGCTCGGCTGAT 71269 36 100.0 32 .................................... TTCTTTTTTTCCTTTTTCAAGGAGTAATTGTG 71201 36 100.0 34 .................................... GTACATGCTCATCTCCTCTTTTTTCATAGTTAGA 71131 36 100.0 32 .................................... TAACTGTTGATGATAGTTTAAAACTTTTGTAT 71063 36 100.0 33 .................................... GCATGCAACATCACCGCCTCGCGGGAAGTGGTG 70994 36 100.0 33 .................................... TGGTTCGGTTTGGTGAAGATGACCGTCGTTGCA 70925 36 100.0 35 .................................... TAATACAGCCTTATTTGACACATACACAGGAATAC 70854 36 100.0 33 .................................... CCCTTGCGTTTTCTAGGTGATGATAAAGTGGTT 70785 36 100.0 34 .................................... ACAGTTGCTTTTTAACTCCAATGAAAAGAGTACG 70715 36 100.0 34 .................................... TTGTTCTTTTAGATTAAAGTCTTCACTTAGGTAG 70645 36 100.0 33 .................................... TACATCGCTGAACGAGGACCTGAATTGGCGCGA 70576 36 100.0 33 .................................... AATCCGCCAGTCACAGATGTAGAAGCTACACCT 70507 36 100.0 35 .................................... ATACTACTAATACTAATTATCATACTCCTTTTAAA 70436 36 100.0 35 .................................... TCACAGCTTACCTCTGTGACCAAACGACCAGCAAA 70365 36 100.0 34 .................................... ACAGACAAAGAGACCCCTTTGCTAGTCACGTTAG 70295 36 100.0 36 .................................... ACATAGATTTTGCGTTCTGCCTCATCGGCATTGGCA 70223 36 100.0 34 .................................... ACTACTAATTTCATTTAGTAATCTCTTCATCAGT 70153 36 100.0 33 .................................... CAACCGCAATCGCGGCTACCACGTCGCGCGTGC 70084 36 100.0 34 .................................... CTAGTTGTACCGTTTCTAGTACATGTCAAAAATT 70014 36 100.0 33 .................................... GAACAGGTGTTCTGGCTGAGCTACCAAAACTTC 69945 36 100.0 33 .................................... GACCATTGGTCAGGTACTGATAAGGAGGTTGTG 69876 36 100.0 34 .................................... ATAAAAACGACGATATCGCCGCGTAGGTGCTTAA 69806 36 100.0 35 .................................... TATCGCATTCCAAGCGCGTGAATAGGCGCCCCACA 69735 36 100.0 33 .................................... CTGATTTTACGCATAGCGTATCCCCTTTTGTTG 69666 36 100.0 35 .................................... GCAATAGTGTTATAGTCCGTTAACCACCCGTCTAT 69595 36 100.0 34 .................................... AGCTGGGCTTAGGACACCATACAAGCCTTTAGCC 69525 36 100.0 35 .................................... GCGACATGATTTTGATAACCACGCGCGTTTTCTAA 69454 36 100.0 33 .................................... AGAGATAGTCCGAGCAACTATCCACGAAATAGG 69385 36 100.0 34 .................................... CGCACTTTAGCGGCTTTCACCGCCTCGGCCTTGG 69315 36 100.0 31 .................................... GTCAGCAGTCGCGTGGCTAATTACCGTATAC 69248 36 100.0 31 .................................... GTCAGCAGTCGCGTGGCTAATTACCGTATAC 69181 36 100.0 33 .................................... ATTTCTTTCGCTAAGCTTTCGCGCGCGTCGTCG 69112 36 100.0 35 .................................... CCATTGATATCTCTCACAAAGTGAACTTCATTGTA 69041 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 36 36 100.0 34 GTTCAAAGCCTTCCCCGATTCCTAGGGGATTAAGAC # Left flank : TTCCTAGGGGATTAAGACTTTTCAACCCGTTGATCAACATCGCATCAGTTA # Right flank : TGATTTTGCAAAGTACGCAAATCCCGCTCGCAAGACGAGAGCTATGCTCGAAGTGAAAAACATGGCTATAATTGAAATTATTATTTAGGAAAGATAACCTATGAATGAAATAAATATATATACGACAGGCACATACAGTACTGCTACCCAAAAAGGCGGTTGGGGTGTTCTCATACAGCAAAAGCTAGCAGATAAGCAAGAACATAAGATTCAGACAATTTTAGGTAGCGATACGCACACCACAAACAATCTAATGAAACTACAGGCACTTATAGAAAGTTTGAAAGCATTAAATTTTAACGAATTATCAAAATATAAATTTTTTCTAGATTCCCACTATTTAATGTTGTCATTGAGAAATCGTGAAAAATATGAAAATACGAATTTTTCAAAGGTTCAAAATGCTGAAAAATTACAAGAACTTTATCGGGTATTAGACTCTAAAGATTTAAAACTCAATAATGATGAGAGTTTAACAATAAAAAACTTTTTGGTATTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAAGCCTTCCCCGATTCCTAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1065-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXAO01000081.1 Moraxella atlantae strain CCUG 6415 CCUG_6415T_0000081, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1064 36 100.0 34 .................................... AGATCGCCGTAAATACACAATTCTGACAATAGTA 994 36 100.0 33 .................................... GCAAGCAGCTTGACGCGCTTAAAGCTGCCCCTG 925 36 100.0 34 .................................... GCTAGGGTTCGGCTAATCGTTGTCGCAGTCCAAG 855 36 100.0 33 .................................... AAACTGTAGATGAGTTTGTCATCTACAGTAAAG 786 36 100.0 34 .................................... TTAGAAGGAGCCTGTATTTGTTCGAAACCTCTTA 716 36 100.0 34 .................................... ATATTTCTTCTCTTCAACGTGAACAAAATTTTGA 646 36 100.0 34 .................................... CGACCTACGTCAGCCTGGTTAGCGTGGGTGAACA 576 36 100.0 33 .................................... CCACCAGTTCCAAGCTCTGTGCAGGCTCTGTAA 507 36 100.0 34 .................................... ACAGTCGTTTAGCTTATATTGCCCGCCCTCTGCT 437 36 100.0 36 .................................... CACCTTAACGTGCATGACGAGTGGGCAGGTATTTAT 365 36 100.0 33 .................................... TGTTTGTCTTGAAAGTGATTCGCCATTGCTATT 296 36 100.0 34 .................................... GGTAGGCCGTCAGAGTAATCAGTAAAGTCAAGCT 226 36 100.0 34 .................................... ATAGTCATCAATGCAATTAAAAACACATTATGAA 156 36 100.0 33 .................................... CAAGATTTTCAACATCCCCATACACTGTTTTAA 87 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 15 36 100.0 34 GTTCAAAGCCTTCCCCGATTCCTAGGGGATTAAGAC # Left flank : ATTTAATGATAATTTTAATCTAAACTGGAGATATGATATGGAACCTATTAAACCATTTGCTTTTATGATTATTTCTTTGTTTTTGGGGGCGTTGCCATTTACGGCTTTGTTTTTTATTTGGTGGATAGTGGTGTTAGTTAATAACGTAAGTGTTGGAAAATAGCGAGGTTTTTGCTATAATAGGACTCGCTAGTTTTTATCTGAAACGACAACTGACCTACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCTTGTAGAAGGAATCCCCTTGCTTTAGCAAGGGGAGGAAGTCAAATTTGCCTTGAACTGTATAAAAACAAAAATTGGTCAAAAAATCACCAACTTTTTAGTTGAATTTTGTCTACTAAAATTTGTTTTTAACTGGTTGTTTTTATTGATAAATAAAAATAAGTGCA # Right flank : CTAATCACCGCCGCGGTCATGGAATGTGATAGCGGTTCAAAGCCTTCCCCGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAAGCCTTCCCCGATTCCTAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //