Array 1 25468-27143 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMEC01000028.1 Escherichia coli strain MOD1-EC6043 MOD1-EC6043_28_length_54541_cov_21.1903, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25468 29 100.0 32 ............................. TTTTTCGACTTGCGTCTGAAAACCATGCGTTC 25529 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 25590 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 25651 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 25712 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 25773 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 25834 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 25895 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 25956 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 26017 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 26078 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 26139 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 26200 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 26261 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 26322 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 26383 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 26444 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 26505 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 26566 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 26627 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 26688 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 26749 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 26810 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 26871 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 26932 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 26993 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 27054 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 27115 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1467-218 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMEC01000019.1 Escherichia coli strain MOD1-EC6043 MOD1-EC6043_19_length_87803_cov_21.089, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1466 29 100.0 32 ............................. GCAGGGCAGCAGCCCGCGCGCCGCCCAGCAAT 1405 29 100.0 32 ............................. CCCTTCTCTGACAGGTTTGCGGGCCTGTACCC 1344 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 1283 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 1222 29 96.6 32 .....T....................... GAGCGTAGAGATTCTCGAAACCGATCCGGACG 1161 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 1100 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 1039 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 978 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 917 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 856 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 795 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 734 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 673 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 612 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 551 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 490 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 429 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 368 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 307 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 246 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //