Array 1 171239-172670 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOD01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712414, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171239 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171300 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171361 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171422 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171483 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171544 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171605 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171666 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171727 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 171788 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171849 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171910 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171971 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172032 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172093 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172154 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172215 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172276 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172337 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172399 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172460 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172521 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 172582 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 172643 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189178-191525 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOD01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712414, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189178 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189239 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 189300 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 189361 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 189422 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189483 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189544 29 96.6 32 A............................ GCGCAGCCCTCAAACCCACAACATACGACGAT 189605 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 189666 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 189727 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 189788 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 189849 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 189910 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 189971 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190032 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190093 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190154 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 190215 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190276 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190337 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190398 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190459 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190520 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190581 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 190642 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 190703 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 190764 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 190825 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 190886 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 190947 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191008 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191069 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191130 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 191191 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191252 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191313 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191374 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191435 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191496 29 93.1 0 A...........T................ | A [191522] ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //