Array 1 3260796-3262744 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZHY01000003.1 Xanthomonas albilineans strain GAB266 Xal-GAB266-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3260796 31 100.0 35 ............................... CCGTGGAACATCGCAGCCAGAAACGCCCGCGCCAA 3260862 31 100.0 35 ............................... ATTCGGAGCTGTGCGACCGCATCCAGGATGTTGGA 3260928 31 100.0 37 ............................... TTCGTAGAGACCGCGCAGGAACGGATCGAGTTGCAGG 3260996 31 100.0 35 ............................... ATGAAACCGGCGGTGGACTGATGCGCTCGAAGAAG 3261062 31 100.0 33 ............................... ACAGCCACCTTCCCATAGCGATTTCCAAGGAAT 3261126 31 100.0 34 ............................... CCGCGAAGGAAGTGAGCTACCGCCGCGACTACCG 3261191 31 100.0 36 ............................... ACACTTCGCCGGGCTTGCGCGGGAAGCGCGCAGCAG 3261258 31 100.0 35 ............................... TCGCCGACGCTCCAATACCTTGCCAGCGCCGGCTC 3261324 31 100.0 35 ............................... AAAGCCCAGAGGGATGGCTTGGCGGACGCGCTGGG 3261390 31 100.0 35 ............................... ATGTGCTGGGCAGCTTCGGGAAGTGTCAGAACATC 3261456 31 100.0 35 ............................... GTGCATGAGTGGGGGTTCCTAGCGCAGTCCGGGGG 3261522 31 100.0 36 ............................... GAGCCCACATGGCCACCGTCTGCATAGCCGGCCCAG 3261589 31 100.0 35 ............................... TACCCGGCGCGCTGACCATGACCGCTCGCCTGCTG 3261655 31 100.0 35 ............................... TTTGTCCGCCAGCGCCTTCGCTCGCCGCATCTGGT 3261721 31 100.0 36 ............................... CACCAATCGCGCTTCGTCCTGGCGCCGCGCACACAG 3261788 31 100.0 36 ............................... CACGGCGCTCGAAGCATGAGCACATTGCCGACGTTG 3261855 31 100.0 35 ............................... TGCTGCTACTTGTTGTTGTATCTCAACTGCGTGCG 3261921 31 100.0 34 ............................... TGGATGCTCATCACTGCGCCTCCCGCGCGACATG 3261986 31 100.0 34 ............................... TTCGAGCGCATCTCACACGCCCGGCTTCAGGAAG 3262051 31 100.0 35 ............................... TTGTACAGCGTCTGCGCCACCTTGACGTTGGCTTG 3262117 31 100.0 35 ............................... CTAACACGTGCGGTCAGAATAATTTCTGGAACCCG 3262183 31 100.0 36 ............................... TTCGCAAACGATGTCGCCCTGCCTGCGCTCAAGGGG 3262250 31 100.0 35 ............................... TTGGTCATGCGGCGCTCCGCTGCTGCATGGAAAGC 3262316 31 100.0 35 ............................... AAGCCATAACGCGCTGCTGCATTATGTGGGGGGAG 3262382 31 100.0 35 ............................... CCCCGCGCCCAACACAGCAGCCTGCCGCGCAGGCA 3262448 31 96.8 36 ...................A........... TGCTGCTCTGTTGTCGCCTGGTTCGCCCGCTCCAGG 3262515 31 100.0 35 ............................... ATGCTTCGGTACACGCTGGAAGACCGCGAATGGCT 3262581 31 96.8 37 ....................C.......... CATCGGCTCACAGCACACGCCGGCCTCGCGCTGCACC 3262649 31 100.0 34 ............................... CTTGTCATTTCGCACGCTGGTGGTGGCTAGGCTA 3262714 31 90.3 0 ............A......C..T........ | ========== ====== ====== ====== =============================== ===================================== ================== 30 31 99.5 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATAAAATGGCAGTCGTCACATGATGGTCTTGGTCAGCTACGATGTCAGCACTAGCTCACCGGGAGGCGACAAGCGCCTGCGCAAGGTAGCCAAAGCCTGTCGCGACCTGGGTCAACGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTGGACCCGGCGCAATGGACCGCACTACGACAACGCCTGTGCGACCTGATAGACCCGGACATCGACAGCCTGAGGTTCTACCACCTCGGTGCAAAGTGGGAAGCCCGCGTCGAACACGTCGGCGCCAAACCCAGCCTTGACCTCAAAGGCCCACTGATCTTTTGACGCGAACCCCAAGCGACCGGGAATTCACCCGCAGGTTCGCAAAAAATGCAAACTATTGATATAAAAAAGAAAGCCGACTCTCAGACCCTCCCCCCCCCCGGACACAAGAGCATGCAATCGCCCGGTCGAGATGCGATTCGCGAAAACAGGTTTTTTCCTCAAGCACACGCCAGGCTTTATCCTGACGGGG # Right flank : CGAACACCTTGGATTACTCCACCGTCACCGACTTAGCCAAATTGCGCGGCTTGTCCACATCGGTGCCGCGCGCCAGCGCAGTGTGATAGGCAAGCAATTGCACCGGCACGGTGTGCAGCACCGGGCTGAGCAGGCCCGCGTGACGCGGCGTGCGAATCACGTGTACGCCTTCGGATGCGTGGAAATTGCTGTCCTGATCGGCGAAGACGAACAGTTCACCACCGCGTGCACGCACTTCCTGCATGTTGGATTTCACCTTTTCCAGGAGCGCATCGTTGGGCGCGATCACCACTACTGGCATGGTCGCGTCCACCAACGCCAATGGGCCATGCTTGAGTTCACCAGCGGGATAGCCTTCCGCATGGATATAGGTGATTTCCTTGAGTTTGAGCGCGCCCTCCAACGCAATCGGATAATGCAGTCCGCGACCGAGAAACAGCGCATTGTGCTTGTCGGCAAAACGCTCGGCCCACACCGCGATCTGCGGCTCCAGGTTGAGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3450135-3451664 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZHY01000003.1 Xanthomonas albilineans strain GAB266 Xal-GAB266-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3450135 28 100.0 32 ............................ ACGGAAAAGTCGAAGGAAGAACAGGGAACGCT 3450195 28 100.0 32 ............................ TTCACGCGCGCAAAGCAGCTAAGTCAAGACTG 3450255 28 100.0 32 ............................ TTCAGGCGGCGCTGGCGCGTACATCGACGTGT 3450315 28 100.0 32 ............................ GTTGCCGGCGTCCCGCAGCCCGGGCATGTCGT 3450375 28 100.0 32 ............................ TTGCCCAAACAAGGAATGAGGATTGGAAAACC 3450435 28 100.0 32 ............................ TGCAGTGGGTAGGCATCCGGGCCGAGGAAAGC 3450495 28 100.0 32 ............................ GAACGGCTCGCCGCGGTGCGACCAACTGTTGA 3450555 28 100.0 32 ............................ ATGTCCATCTTTGCGTCACGCAGTTGAGATAC 3450615 28 100.0 32 ............................ ACAGCGAAGGCGGTGCTGATATCGCTTGCCGA 3450675 28 100.0 32 ............................ TGATCCCATTCGCTATCGACTCAGCCATGCGA 3450735 28 100.0 32 ............................ AATTCCAAGGCCAAGACTTCTGCGCGATAGAT 3450795 28 100.0 32 ............................ TTTGACCAAGATTGCATTGCTCGCCGCTACGC 3450855 28 100.0 32 ............................ ACGAGGCACAGCAGCGCGGCTGACTTACTCAG 3450915 28 100.0 32 ............................ AGTTCCAGCGCAAAATTCACCGCGCCCGCCGC 3450975 28 100.0 32 ............................ TGAGGAAAAGCCATGAGCGACAACGTCGTCCG 3451035 28 100.0 32 ............................ AGCCAGCGAGGTATTGCTCCCACGCTGCTTGC 3451095 28 100.0 32 ............................ TGTCATCCCCTCAGTTCATATTAGTTGGTGGC 3451155 28 100.0 32 ............................ CCTCGATGCGGTGCCGGAGTCTGCATTGGATG 3451215 28 100.0 32 ............................ ACGCCCCGGCTCGTCGCGGGTATCCCTCGCGA 3451275 28 96.4 32 ............T............... GCGAATTACCACTCGCGCACGCCGCAGTACAA 3451335 28 100.0 32 ............................ TCCAGGCGGAACTCATCGCGGTCAATACGGCC 3451395 28 96.4 33 ...........................G TGGCGCAATCTCCTTCTTTTCCAGCGCATACAC 3451456 28 100.0 32 ............................ AATGCACGCCGTCCTCTGTTTCACGTAGATGA 3451516 28 100.0 33 ............................ ACGACTGCCCGGCATCATGTGCTCGAGCTTGTT 3451577 28 96.4 32 ............A............... TGTTGGCCGCTCGATAGCCACTGCGGAATGGC 3451637 28 82.1 0 ......................TGTC.C | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.9 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCCTGCACCATCTGATGGCAACCACCTGGCTGCATGGCGTTCGCGACCATGTGACCATCACCAGCATCGGTGCCGTGCCATCCGAGGCAGTGCACCGACAAGTGACGCGTGTGCAGGCCAAAAGCAGCCCCGAACGCCTGCGTCGGCGTGCCATGCGCCGACATGGGATAAGTGAGGATCTCGCCGTCCAACGCATTCCAGATTCGGCGGCAGAACAGTTGCGACTTCCGTTCGTCGTACTGGGCAGCCGCAGCACCGGCCAAACCGCGTTCCCGGTCTTCGTACGGCATGGCCCCGTACAGCAAGACCCCGTACCTGGCGACTTCAGCAGTTATGGACTCAGCCGGGGAGCCACCGTTCCCTGGTTCTGACCCTTTTTTCTTACGACCAAACCCACCAAGGAAAAACAAACACTTAGCAGCCGCCCCAGAAAAAGGGGTTGGCTGCTTTTCTTTATGCGTTTATCTTTCAAGTCAAAGACTTGGATAATAGAACGCCTA # Right flank : CCAGCACTTTCAATCTTCATCTTCATGGCGTTGCGCATAGAAATCTGCTGCCGCTTCGATCAGGTAGGTATAGCGTTTCACCATCGCCTGCCAGGCCTGCGCCTCCACTTGGTGTTCGGCGTGGATATCCTCCGGCACCTCGCTGACCTCATCGATCAACTTTGGGACTTCGTGATTCCACCAACGCAGCATCAGGTCTGGCCGCTGATGCGTGCGAATCAGCGACTCCACCAGCGACTGCATCGCCGCGAATTGCCGCACCGTGCGAATGCGCTGGCCTTCCAAGAAGTGCGTGCGCTCCTGTTGCTCAGCCAACGCCTCTTCCAGGGCATCCAGCCGCTGGCGGAGGTCAGCAGGCCCTCGACCGAAAACTCTCATGCGATTACTCCCCGCCCAGCGCGAGCCGGGGCACCTGCGGTGCTTTCAGCAACAGCTTCTTGAAGTAGCTGTCCTTGTAGTAAAAAATCTTGTTGGCCAGGATCGGATAGCCAATGCCCTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3700054-3699785 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZHY01000003.1 Xanthomonas albilineans strain GAB266 Xal-GAB266-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3700053 28 96.4 32 A........................... AAAAAGGATCACCTTCCGCAGGGTCGGGCGAC 3699993 28 100.0 32 ............................ ACTACGTTCACGCGATCCTTGAAGGCGCGCTC 3699933 28 100.0 32 ............................ TTACCGACATTGGCAGCTTCTCGCGCGAGAAA 3699873 28 100.0 32 ............................ TTCGAGGCGAAGCTGAAGGGGGATGCGTTTCA 3699813 28 96.4 0 .........................C.. | T [3699789] ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GCGATGCTCGTTCATCGCTCCCTTGGGTGCACCGGTCGATCCGGAGGTGTAGATGACATACGCCAAATGGCGTGCGGTCAGGCCATTGGCGTGGCGGTCGGGATTATTGTCTGGCAGATGCGCCCAATGCTCACTGTCGGCTTGCAGATCGACGATCACCGCCGCAGTGGCACTGCATTCGACCAGGCGACGACTGGCGGCATCCGTCAGCACCGCCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGTGGACCACATCGTCCCAAAGTCGCAGGGTGGCACCGATCATCCAAACAACTGCCAGGCGATCTGCCATCGCTGTCACGTACTCAAAACGGCGCAGGAATCGCGTCAGGGGCGCGAAGGTGCTTGATGCAAGACAATTTGGACATATGCACAATGACAACGGTCATGGCATGCTCG # Right flank : TGCTCGGGGCATCCATCGGACTCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCTCCCTCAATTTTTCTCGCGTGCAAAATGAAACAGGGGGGGGTCCCCCCTGCAAGGAATCAACATGGCCGGACGCAAGCGTCTTCCCACCACCGTCAAGCAGATCAAAGGCACGCTGCAAAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCCAACTCGCCAGGAGCGTCATATACAGCGTCAACCCATGCCGCTGGCTGAGTTCCTTCAGCGCCTGCAACTGCTGTGGCTCCACGACCACTTCCAGTGTTGCTCCGGCATGGTCCTGCCGGGGCGGACGCGGACGATCCGTCGGCAGTTCAAGCAATACAGGCACACCGGACAGCGTTTCGCGCCAGTAAGTCGCC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3706219-3706427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZHY01000003.1 Xanthomonas albilineans strain GAB266 Xal-GAB266-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3706219 28 96.4 32 A........................... AATCGCCGCAGCGCCCGCACTGACCGATGTAC 3706279 28 100.0 32 ............................ ATTCACCGCAGCATTGCCTGCCGCCCCCATGG 3706339 28 100.0 32 ............................ CCTGGACGCGTACGACGATGTTACGTCCATCG 3706399 28 96.4 0 .........................C.. | T [3706423] ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : ATCGAGCGCCATCTGCACCACTTCTTCGCCGTGTTGCACGGCATGGTCGCCGACGAACACTGCCGCGTGGAGCGCTTGCCGCTCTTCAACACCACCGAGCGCCAACAATGGCTGCAACGCCTCGCCCGCGAGCATCGCGTCTTCGCCGACCAGCGCTGTCTGCCCAGCGTGTTCGAGCAGCAGGTCGCACGCACCCCGCAGGCCATCGCCGTGGTCGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGTGGACCACATCGTCCCAAAGTCGCAGGGTGGCACCGATCATCCAAACAACTGCCAGGCGATCTGCCATCGCTGTCACGTACTCAAGACGGCCCAGGAATCGCATCAGGGACGCGAAGGTGCTTGATGAAAAACAATTTGGACAGATGCACAATGACAACGGTCATGGCATGCTCG # Right flank : ATGCTCGGGGCATCCATCGGACTCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCTCCCTCAATTTTTCTCGCGTGCAAAATGAAACAGGGGGGGTCCCCCCTGCAAGGAATCAACATGGCCGGACGCAAGCGTCTTCCCACCACCGTCAAGCAGATCAAAGGCACGCTGCAAAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTCATGCATGCTTCGGTCAGGAAGCCGCCAAAGCCTTCGCCCAAGTTGTCGTTCAGGATCGGACGGCTCTTGTTGCTTGCCTTGTCCTTGGCGGCGTTGGCGTAATTCACGTTGTACGGTGGATCGGTGAAGGCCATGTCGGGCAACTCGTCACCGAGCAGCTGCGTGTAGTCGTCGGCCTTGGTGGCATCGCCGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //