Array 1 201852-205720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFTX010000003.1 Photobacterium damselae subsp. damselae strain 125dy-OG11 NODE_3_length_270137_cov_25.201655, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 201852 28 100.0 32 ............................ ACAACCGTCATATCGTCACCACAAGGGCGAAC 201912 28 100.0 32 ............................ AATAAACGAGAACTCTACGCCAGTAACCTTGT 201972 28 100.0 32 ............................ AAAAAGATAACGAGATTTTTAAGGATTTAATC 202032 28 100.0 32 ............................ CATACCCCCGTTATCTTCATACTCAAAAATAG 202092 28 100.0 32 ............................ AAAGCAAGAGATCGAGTGCGAATTCATACGGT 202152 28 100.0 32 ............................ TGCGCGAAAACAACACTGTAAACGCTAAAGCT 202212 28 100.0 32 ............................ TTACACTGTAACGATGCAACCTTGTCGGTCAT 202272 28 100.0 32 ............................ ATATTTTATTGGTTATGCTTTATTTACTGCGC 202332 28 100.0 32 ............................ TTTCATGTTGGCGTATCCGTGGATAACTCATT 202392 28 100.0 32 ............................ TAATTCGATTTTTTCTTTCGTCATTTTTACAC 202452 28 100.0 32 ............................ TGCGTCATTGCAGCAGCAATATTACTAACATT 202512 28 100.0 32 ............................ TAACGCCGCCGCTCTAAATTTATCAAACATAT 202572 28 100.0 32 ............................ TACTACAGCAAACCGTTAAGAAGTATCAATCA 202632 28 100.0 32 ............................ TGAACTCAGAAACAACAAAAGCACCAAAACCC 202692 28 100.0 32 ............................ CGGGTTCTGCATTTGCTTTAACGCTGGGTGGG 202752 28 100.0 32 ............................ ACACAGCGTAGGGTTTTCTCCGTACCATCGAC 202812 28 100.0 32 ............................ AGTAAAAAAAGCGTCTTTAATGGGCGCTACTG 202872 28 100.0 33 ............................ TTGTTGAAAATAACGGTTTTGTTTGGGTTAGAA 202933 28 100.0 32 ............................ TTCCCGATTTGGTTTGTTTTCCCATATCCATT 202993 28 100.0 32 ............................ AAGGTTAATGGCCACTTGGTTTGCGTGAGCTA 203053 28 100.0 32 ............................ GAATTATCGGAGCGGAAACAAACAAATCTGAT 203113 28 100.0 32 ............................ AGATGCAGGCGCTTTTTCATGGAAATCAATAG 203173 28 100.0 32 ............................ TTCGGATGCTATCGAAAAGTTACGCGGTGATC 203233 28 100.0 32 ............................ TAAACCCTTTTTGATGGCAACGTCCATTGTCA 203293 28 100.0 32 ............................ TTCGGATGCTATCGAAAAGTTACGCGGTGATC 203353 28 100.0 32 ............................ AGTTTATGAGTTCACATCTTCACAAATAGCTC 203413 28 100.0 32 ............................ AAGAAACGCTTGACGTTTTATTCCCGACTGCT 203473 28 100.0 32 ............................ CAGTGAATAAAACATACTTACAGAGAATAGTG 203533 28 100.0 32 ............................ TCCAAGGTTCGGATCTCTATCATCGTCCTCTT 203593 28 100.0 32 ............................ ATTATATTTGGGGCCTACTACGCGCAAGGGCA 203653 28 100.0 32 ............................ ACAGGGCCGCACTATTGGCCTTAACTACAAAA 203713 28 100.0 32 ............................ AATTGGCGCTGATGATCCGTGGGCAAGTATTG 203773 28 100.0 32 ............................ ATATTGGCAACTGGACAAAGCAACAGCAAAGG 203833 28 100.0 32 ............................ AAGGAAAGATGGTGGCTGTTGTGGCTCGTAAG 203893 28 100.0 32 ............................ TTTAAAATCAACGGTTTCTAGTTCATGTGGAT 203953 28 100.0 32 ............................ CAGCGACACACGAAAGGAAACCAGCTTACGCC 204013 28 100.0 32 ............................ TGATAAATCCATCTTAAGCCCCAAAACCTTAA 204073 28 100.0 32 ............................ AAATGAATATGGTTTAGGTGTGCCTGATTTAG 204133 28 100.0 32 ............................ CTGAAAACCCAACTCGCAATATTGTTACGGAT 204193 28 100.0 32 ............................ CCAAAGAAGCGCTGATACAGTGCCACGCTGAT 204253 28 100.0 32 ............................ AAACAGCGCATTCCATGCCGCGCCAAGGGTAT 204313 28 100.0 32 ............................ AACCGAATAATATTTTAGGGCATAGTTTACAG 204373 28 100.0 32 ............................ CATAAATCGCACCCAACAAATTAAATTGTGGC 204433 28 100.0 32 ............................ AATTTTAAAAGATAAGTCATCAACAGGCCCAA 204493 28 100.0 32 ............................ TAAATCCAACTCATTACCCTTAATCACAGACG 204553 28 100.0 32 ............................ AACTTTAATTGAATCTACGATTGCGACATTGA 204613 28 100.0 32 ............................ TATGACGGGTATTGCGTTGTTTCTGCATGGGA 204673 28 100.0 32 ............................ AGTGACCCCGATTACCTTTAGCTTTGGGTTTC 204733 28 100.0 32 ............................ TGCGTTTGATGGTGGCTGATTGTATTGCTGTT 204793 28 100.0 32 ............................ TAAAGAGGTCGCCATAGTCGGCGACCTTGACT 204853 28 100.0 32 ............................ TATTGACTTTGCGATACCGCTAATTGTTGGTT 204913 28 100.0 32 ............................ AACAGTACTACTCCTCGATGAAGCTCATATGT 204973 28 100.0 32 ............................ TTTGTATTGTAAGCGTCAAACCACATTCCGAC 205033 28 100.0 32 ............................ GCCGAGAGTTTTAATTTGAAGGTGGTATTGCC 205093 28 100.0 32 ............................ TTTTTAAAGCTCATTGTGTGTTGTGCGTAGCT 205153 28 100.0 32 ............................ ATTAAAGTGCGCTAATTTTATAAGCGCGAATA 205213 28 100.0 32 ............................ AAGGCAAGTTAATTCGCTAAGACTTGCTGATT 205273 28 100.0 32 ............................ ATCCACCGTAATCATTAAGTCTTACGCTAATG 205333 28 100.0 32 ............................ AAGCATTGGTGCGCCAAACCTTCTGATTGAGT 205393 28 100.0 32 ............................ AGCTTGCCCAATGATACTCAACGAATCCCACT 205453 28 100.0 32 ............................ TTTATAATGTTTGTTAGGCTTGAATCCTAAAT 205513 28 100.0 32 ............................ GATAACTTCCAACGCGTGGTGATATGAATAAT 205573 28 100.0 32 ............................ ATTCTGCCAAAAATTGGGTCATTAAACTCTGC 205633 28 96.4 32 .................T.......... CAAGCAAAACGAAGAGATATACCCGCAATACG 205693 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 65 28 99.9 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AGTGTAGATCTAAAAGTCTCAAACTGTCATCTAATAATCTTTATTTTGATTCTTTTTGTGATTATTTTAAGCTGGATTCAAAAGGGACCAAAAGTAGGCGGTTAAGTTCAAGGAGTGATCATGTCTTCAATACCAACAACAAAAGAGGAATTGGAAAAAGCAATTAATGATTCTTTTTCTAAATTACTCATAGACTTAAAAGCAATACCTGAATCTGAATCGCGGACACATTCTCGTCATTATCTAATCATCAACTCTATCAAGAACCATGGTACGAAAAATGGACGTTAGGGCGAATGATTCAGTTTAATACCTCATCGCCAATGAAAAATGTAAGAACTAAGGTACGAAGATTTAAAAGAGGGATGTGACCCTATTTTTTGACTTATTTATAAGTTATTGATTTATAAATATGTAAAATAGGACGCAGAAAAAAGGGTATTTTAGAATAAAGTGGTCTAAGTTCTTTAAAAATAAACCGAAATAGAATAAAGTCTTCA # Right flank : ATGCAGGCAGAAATTCGCAATGGTTTGAACCTGCTTCACTACCGAATAGGTAGATAAAACTTAGACATATTTTACTCTTTAATCTGATATTTCGTCATTCTTGCTAATAAAGTCGCATTTTAAATTCATCCTGTTGAATATACTAATGCCATGATAGTTAACGCATTGATATGATGTTAAAGATGAAAAAGGACTTTTCTCCTAGCGAGCTTAAAACCATACTCCACTCAAAACGTGCCAATCTTTATTATCTTCAGCATTGTCGAGTGTTAGTAAACAGTGGGCGAGTTGAATATGTTACTGATGAGGGTAAAGAGAGTTTATATTGGAATATCCCCATCGCCAATACGACCGCCATTATGCTTGGAACGGGTACATCGGTGACTCAAGCTGCCATGCGAGAGTTGGCTAAAGCTGGTGTATTAGTCGGTTTTTGTGGTGGCGGTGGTACTCCGCTTTTTTCAGGTAATGAAGTTCAAGTGGATGTCTCTTGGCTTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 214178-216308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFTX010000003.1 Photobacterium damselae subsp. damselae strain 125dy-OG11 NODE_3_length_270137_cov_25.201655, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 214178 28 100.0 32 ............................ ATCAAAAAGGGTTTAGGTGTAGACTACGGCTG 214238 28 100.0 32 ............................ AACTTGTTTGCTGCATCCGTTGAGACTGTGTA 214298 28 100.0 32 ............................ ATCTTTGGTGCCAGCTTTTGGAGTGTTGTCCT 214358 28 100.0 32 ............................ TTAAATAAGTCAATTAGCAATCAGCTAGTATT 214418 28 100.0 32 ............................ AAAACCACCGCATACGTTATACCTTTCATGTT 214478 28 100.0 32 ............................ TGTTGCTGTGAAATCTTCAGAAAAATTCACAG 214538 28 100.0 32 ............................ AGTTCCATAAGGTGGATCCAGATATATGAGCT 214598 28 100.0 32 ............................ TACCAACTATCAGCGCGGAGCTGATTTTCAGC 214658 28 100.0 32 ............................ ACAGAAAGGGTCTAAAACAATATCTCCCTCAT 214718 28 100.0 33 ............................ TTGATTTATCAGGTGTTTTTGTATCTGGCTTAG 214779 28 100.0 32 ............................ ATGATCGCGATAGCAGAACCACCAAGGCCGCC 214839 28 100.0 32 ............................ GTTGACTTCAATCTATTTGTCAATGGTGAATT 214899 28 100.0 32 ............................ AAAACGGAGCGCAGATTCCAACGGGTTATGTT 214959 28 100.0 32 ............................ AGTTAAAAAAGCGTCATTAATGGGCGCAACCG 215019 28 100.0 32 ............................ TTTCTAATGAGTTAAAATCTCTAGAAATCGCA 215079 28 100.0 32 ............................ AATAAAATTTATTAATTAAGGATCGAAATTAT 215139 28 100.0 32 ............................ CGTTTATTTTTCCTGTTATCGGCGGCGATATT 215199 28 100.0 32 ............................ TCCTGAAGTCAATCCTTTAACATCATCCAAGC 215259 28 100.0 32 ............................ TTCAGGACGGACGCCAATGAAATTCCACTTAA 215319 28 100.0 33 ............................ AGAATCTGGTTTCTTTTTAGGATCACATTTCCA 215380 28 100.0 32 ............................ TCAAACGCACATTGACAGCCGTAGTCTACACC 215440 28 100.0 32 ............................ TTAATGAAATTAGTGTTATTTAATAACCACGA 215500 28 100.0 32 ............................ GCTTCAATTGATAATGTTTCAAGATTAATCAA 215560 28 100.0 32 ............................ ATACCCACAACTCACCAGAGACAGGTGCCGCA 215620 28 100.0 32 ............................ ATGCGATGACCAGTCATGCAGAGGACTATCTC 215680 28 100.0 32 ............................ ACTAACAGTTAGTGCGCATTATATGGCACGTC 215740 28 100.0 32 ............................ ACAAATCAACAACGGCATCTGTGTTTTGCTCA 215800 28 100.0 32 ............................ AGCTTCAAGCGATTGCAATTTATTGTCGATAG 215860 28 100.0 32 ............................ GTATAACGGTGGAAAAAGACTTAGTTGGTGTC 215920 28 100.0 32 ............................ AGCATATGGGATGCTTAATAAAGCTGCAAAGG 215980 28 100.0 32 ............................ TTTAATTTACTGATTAATAAAACTTTTTAGAT 216040 28 100.0 32 ............................ TCCGTTACAGCTAAACAAACAGCAAGGTGAGC 216100 28 100.0 32 ............................ AACTACAAGGCGCTATTCTTCGCTAAGACTGA 216160 28 100.0 32 ............................ TAAGCACATCAAGAAAGGTCACCAACTTGTAA 216220 28 92.9 32 .......A.........T.......... CCGTCTAGTAACACGGGTTGAAAGTCTTAATG 216280 28 82.1 0 ...........CA........A..CT.. | C [216300] ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.3 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GATGAACTAATGGCTTTACCTTGGTTGAAAGGTTTGCGTGATTACACCAAAGTTAGTGCAATCTTACCAATACCTCATGATATTGCAGGGTATCGCACTGTGCATCGCGTGCAAAAAAAGAGTCCTCATAATTTGCGTAAGCGTGCGGTAGCAAAAGGCCGAATGACTGAACAAGAGGCTCTGACGAAAATCCCTGATGCGTTACAAGAACGATTAGCTTTACCTTTTATTCAGATGCAGAGTTTGTCGAATAAGCAGGTAATGCGTGTTTATGTTGCGCTAGGAGAGATTCAATCAGAACCTGTTTTTGGTGAGTTTTCTAGCTATGGTATGAGCCGCACGTCGACCATTCCTTGGTTTTAATCTGTAGACCCTTTTTTTAAGCTTATACTTAACTTATTGATTTATAAATAAGATTGTAATGGGTGAGAAAAAAGGGTTTTTTATTGGAAAATGACTTAAGCTCTTTAAAAATAAACCGAAATCGAATAAAGTCTTCA # Right flank : AGTAAACTTTGGAGCTAACCTTTGCTTTTGGTATCCTTGGTGCTTATCGCTAAGATTATTAGCAAAAGCATAAATATAGGTACTACATGCTCATAATCTCAAACAATGTGACGATTTCCGATTGGGAGATTGAACTTAACGCTATTCGCTCTGCGGGAAATGGTGGGCAAAACGTCAATAAAGTAGCCACAGCAATTCATCTTAGATTTGATATTAAGAAATCATCACTGCCTGCTATTTATAAAGAAAAATTACTTAAGCTATCAGACAGTCGAATTTCTTCTGATGGTGTGATCATCATTAAATCGCAGCAATATCGAACCCAACTGCAAAATAAAGAAGCTGCTCTTGAGCGATTAAAAGAATTGATTTTATCTGCGATGGTTGTACAGAAAGCCCGCCGTCCAACTAAGCCAACCAAAAACTCCCAGCGTCGTCGTTTAGAGTCTAAAACCAAAAGGGGAACGACTAAAACGATGAGAAAGAAGGTTGATTTCTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //