Array 1 11658-11363 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGSA01000076.1 Bacillus thuringiensis serovar higo strain NRRL B-23150 51900, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 11657 32 84.4 34 ......T...T.GC.......A.......... TTTATGGTAACTGGTGGTTTAACATATCACATTT 11591 32 93.8 34 .........T.........T............ TTTGATATACCTATTTTATCTATTGTTTGGATAA 11525 32 100.0 35 ................................ AAGAAAAAAGGTCAAACTTTTAGTAATCAAAAAGC 11458 32 87.5 32 ..AA.....T........A............. GGCGATATGCCAGGCATTTGGCAAAGTGTTAT 11394 32 62.5 0 TGTCGCA.CTTA..................C. | ========== ====== ====== ====== ================================ =================================== ================== 5 32 85.6 34 GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Left flank : GGTGGGATCATAATTCAAAACTTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATCGATGATTATACTGTATTGGTACATGAATTAGATGATTTAAAAGTTGAGATTATTAATGGAATGTAATAAAAAGCGTCAGAATAGTTGAAAGAAAGTATCCTTATAAGGATATACTCTATCAATTTATTAAAGGAA # Right flank : CTGTTAATTTCTTAACGAGGACTAGGAGCGTAAAATCACATCTCTTGTATGATTGTGATTAAACAAATTGAATTAAGAATACCTTGTGCAAACTTTTAGAATGCTAATAAAATTTTAGAAGTGAATTTTCAGTTTATCAAAGGAGGTCAATAATGAACAATAATTTCATGATAAAAATTAAAAACTTAATATTAAGTAAATCCGAAGGAGAATTTTGGGATTTTAAACAAGAGTGGCATAGAGACAATGAGAGATTATTACACGATATTCTTTGTTTTGCAAATACAGTGCATGAAAAAGACTGCTATATAATAATTGGAGTATCTGATAATGGAGATATAGTTGGGATAAATGATGAAAATAGAAGGGAACAGTCAAGTATACTTGACTTACTTGCTAATACTGTTTTTGCAGGTGATAATACCCCAAGAATTCAAATAGACACAATAAACATAGAACATAAAAAGGTTGATATTCTTACAATATTTAATTCTAATAAT # Questionable array : NO Score: 6.35 # Score Detail : 1:0, 2:3, 3:3, 4:0.28, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.90%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 615-320 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGSA01000214.1 Bacillus thuringiensis serovar higo strain NRRL B-23150 52038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 614 32 84.4 35 ....T.....T.G.....AC............ CATTGGCGGTAGTTCATAAGTAACAACAAATGGAT 547 32 87.5 34 ..........TAG......C............ ATGATATTCAAAGAGCCTGAACAAGTGGAATCGA 481 32 93.8 33 .........T.........C............ ACCCCCTTGTGCAACGCAAAAAAGTCGCTATAA 416 32 100.0 33 ................................ TTACAAGCGGTACTTATGACCCTCAGGGTTTAT 351 32 75.0 0 ...C......T.G..A.........G.A.G.C | ========== ====== ====== ====== ================================ =================================== ================== 5 32 88.1 34 GTCGCACCTCATATAGGTGTGTGGATTGAAAT # Left flank : ATCCGATTGACATTACTAGTATGCAGATTACGAAAAGTGTAATGTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATGGTGTTGATCTTGGAGCTTATATATTTTATGGAAGTATTCATATGCAATGAGCAAGGAAGACAGATTTTACCAAAGGTGATGCGGAAAAGATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGGGTCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAACATAATTCAAAACTTGGCCAGTACTCTTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATATTTTAAAAGTGGCTATTATTGATGGACTGTAATGAAGAAAACGTTAGAATAATTGAAGGAAAGCGTATTTATTAAAAAGTTAATCAACCATTTATTAAAGAAAA # Right flank : CTGATAAGATAATTGATAGTAATTTAGTTTCTCTGTTGGAATAAGAGGACCTGCTTCAATTCATACGGCAACGAGTGTTGATCCGATTGACATTACTAGTATGCATATTACGAAAAGTGTAAATTCTGAGTCTGGCAAGGATAAGGGTTCAGATACGATGGGGATGAAGCAGCGTGCTGATTTTGGAGTCTATCTTTTTTATGGAAGTATTAATACACAGTTAGCAGAAAAGACAGGCTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGCATCAGCAGCACGCCCTGAAG # Questionable array : NO Score: 6.47 # Score Detail : 1:0, 2:3, 3:3, 4:0.40, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATATAGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6873-6025 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGSA01000006.1 Bacillus thuringiensis serovar higo strain NRRL B-23150 51830, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================== ================== 6872 32 100.0 34 ................................ TTAGAAATTGTTGAAGTCATCTTGTGACGCTTTA 6806 32 100.0 34 ................................ CACAATAACCTAACTACCACACAATATATGTCCA 6740 32 100.0 34 ................................ AGTTGAGTGAATTAATGCTCGTGAGTGATTGTAC 6674 32 93.8 34 ...........A.......T............ TTATCTTTATCTACTGCAACTACACCAAAATTAT 6608 32 93.8 34 ...........A............G....... TATTAATGTAATAGAAAAAGAGAAAGAGACTAAG 6542 32 93.8 33 .........C...A.................. TACACAGACAAAGAGGGCAACCCTACTCGCCTT 6477 31 96.9 34 ..............-................. ATACAAAACGGATTTTACAATTACTTCTTGAAAT 6412 32 93.8 33 .........C.........T............ ATGCCAATCGGTGTACAAGCGGACTTCATTAAC 6347 32 93.8 34 A...T........................... CCCTGCTGATGCAACATCGCTACCTACATTTTGT 6281 32 93.8 35 .........C..........A........... TCAGACGGCTTGTCTTTTTCCGTAGGCTTATCTGT 6214 31 87.5 34 ......T.-..........TA........... TACCTAGGGTTTATATTTATCTGGAAAGCTCATA 6149 32 96.9 62 .....................A.......... GGGGATATGCCAGGCGTTTGGCAAAGTGTTATTGGTTTATCAGGAGTCAGTGGCTTGTCATG 6055 31 87.5 0 .........C.A.-......C........... | ========== ====== ====== ====== ================================ ============================================================== ================== 13 32 94.7 36 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TATCTAGTTATATATTAAAAGTTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTTTGAGTTAGCAAAATAAAGGAATTTTTAGTATTCAATATTCTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATAAACTTGATAGGTGGATAGAGAGACAATATATAGTGAATTTTATTGTAAATTACGAATCAATATATTAAGGGTATTATGAAACTATACATTTTGGTTATTCAATTAGGTAATAGCTATGAAAATAAGGTCGAACATATTGGTGTAAAAGAATCAATTGATTTAGAAAGCCCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTTGAATTCTCATGCTTTATAATGGTGATTTATGATTTTTATACAAATTACTTTATTAAATAAAAACATTTGTATATTTTTGGATAAAACTAACGTATTTTTGGTTGATTTCGAACACAAATCGGT # Right flank : TAGCAATGCTCTGGCTTTAAAACGCTCTGCAGATGTAGATACTCAACTGGAAGTATCTATATCTGTAGTATCTAACACACATGTTATAAACATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGGCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATCGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATATCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTA # Questionable array : NO Score: 8.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.30,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //