Array 1 131302-131536 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP031700.1 Neisseria zalophi strain ATCC BAA-2455 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	================================	======================================	==================
    131302	    32	 100.0	    35	................................	AGGCGGCCTTGTTGTTAAGCAAGGCAGCGCGCCCG   	
    131369	    32	 100.0	    38	................................	AAGAAAAGAACAGCAAAGCTCGGTTGTAAAATATCCGA	
    131439	    32	 100.0	    35	................................	AGTCATAATGTTAGTACCTTGCAAGCGGTCTAAAG   	
    131506	    31	  78.1	     0	....................A.ACA..-..TT	|                                     	
==========	======	======	======	================================	======================================	==================
         4	    32	  94.5	    36	TCAGCCGCCTTTGCGCGGCTGTGTGTTGAAAC	                                      	       

# Left flank :   TCGTAATGGATAAACACATCCAAATCAGGCAGCGTGCCAAGCAATGCGCCGTAAAAAATCGCCTTACGCCCCTGATACTTGCCTAAGCCCGCCCCCTGCACCGCCGCACCCAATACGGCCTGAGTCAAAGAGTCCATATTCAATTATTCTCCGATGATGATGTTCAAATATTTTACAAATTAATCAAGCCATATTGTTATAAATTATCTATAGTTTATAGCTTTAAATAGCTTTATCAAACCCAATGTTTAACATAAAATCAAACAAGTTTATAACATATAAATAAACAATCCCGAAAGCCATAAAATTATTGCCCGCTAATATATAGCGCCCGTTAAAATACGGTGAGATTGGCGATCATAAAAACTCTTTAACAATGAAGATATTATGAATATAGGTATAACCCAAACGGCTGTGTTATACTTTTTTCAGACCCTTGACGATACTTTAGCGAATTAAAGCTTTCAAGGCTTTGATTGGTGTAAGTTTCCCAAGAGGCT
# Right flank :  TTATATTCATTATTGGCACTAAAAAACGACTATTTAAAAATAGTCGTTTTTTCTCTATTAACTATCAGCAACTCGGTTTTCCAGTACGGTGATTAATCGCACCATGGCTAATCAATAATTTTTGCATCTCGGGATAGTTCCGCACGCAGGCATAAGAAAGTGCGCTTTGATTATATGAAGCAGCATTACGGTTGGTCTGCGTGGTAACCAAATTAGGATTGGCTCCTTGAGACAGCAGATATTTTGCAGTTTCCAAGCGGTTATTGCTGGCCGCAATCATAATCAATGTTTCCCCGTCGTTTTCTACGGTTTGGTCGTTCAAATCGGTTTCGGCGCGCAACAGGTTATGCAGTTTTTTCACAATGGCGGTATTTTTGCCGAGCACGGCGGATTTCAATGCGTTATAAACATCGCCGCGATCGGTGGCGTGTAAATCGGCACCCTGCCCGATTAAATAATCCACTATATCTTCATAACCAATAAACGCGGCCCAACCGAGC

# Questionable array : NO	 Score: 5.58
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TCAGCCGCCTTTGCGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,9] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-3.50,-4.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,1.01   Confidence: MEDIUM] 

# Array family : I-C [Matched known repeat from this family],   
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