Array 1 103651-103256 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLMR01000008.1 Escherichia coli strain MOD1-EC5526 MOD1-EC5526_8_length_164742_cov_48.3149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 103650 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 103589 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 103528 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 103467 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 103406 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 103345 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 103284 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120950-119152 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLMR01000008.1 Escherichia coli strain MOD1-EC5526 MOD1-EC5526_8_length_164742_cov_48.3149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120949 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 120888 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 120827 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 120766 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 120705 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 120644 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 120583 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 120522 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 120461 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 120400 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 120339 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 120278 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 120217 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 120156 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 120095 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 120034 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 119973 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 119912 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 119851 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 119790 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 119729 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 119668 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 119607 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 119546 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 119485 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 119424 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 119363 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 119302 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 119241 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 119180 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //