Array 1 1099972-1098895 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWT010000001.1 Listeria booriae strain FSL L7-0514 NODE_1_length_1195157_cov_76.692355, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1099971 30 100.0 36 .............................. TCGGATTGGTATGTTTTGCAACTTCTTCGCCTTTAT 1099905 30 100.0 36 .............................. ATTTTCTGTTTTACGGCGTTGCTCCATAAAAAATCA 1099839 30 100.0 34 .............................. CTCAATGATTTGAAGTAATATTTTACTTCTCTCA 1099775 30 100.0 36 .............................. CATTCGAACCTGTCGCTTGCGCTGCACGTGTTGTAC 1099709 30 100.0 36 .............................. ACATACAATGGTGCTGTATTGTTACTCACTGCTCAC 1099643 30 100.0 34 .............................. CTTATTCCGCCTCCTGTTATGGATGATTTATAAT 1099579 30 100.0 36 .............................. AAAAAAGGCATGAGCGTACGTAATCGAGTCGAAGTT 1099513 30 100.0 36 .............................. CCTAATGAAGCTGATTTCTAACAAGAAAAAGAAACA 1099447 30 100.0 36 .............................. AAAGAAGAACGCGAACCCCTTTACGTTGATCCGACA 1099381 30 100.0 35 .............................. CACGTTGATCCATCCTGTCAATATAACTGTTCATG 1099316 30 100.0 34 .............................. TCCATTCTCACATCAACAACGATGATATTTTTTT 1099252 30 100.0 35 .............................. ACCAAGGCCCCTAGTTCTGACCTGGTATCTATAGC 1099187 30 100.0 34 .............................. TTTATTTATAGCCTCCTTCTTTTAAATCCTTAAG 1099123 30 100.0 36 .............................. CCTTTCTAATATGAGGCGGAAAGCATTTTTGATTTT 1099057 30 100.0 36 .............................. CGTGTTATTGAACTACAAGTATTCGACAGGTTGGCT 1098991 30 100.0 36 .............................. TTTTCAAATGTTGCTTGAGTGCCTAGCTTCGGATTC 1098925 30 96.7 0 .................T............ | A [1098907] ========== ====== ====== ====== ============================== ==================================== ================== 17 30 99.8 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GCATAAAGAAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGTTCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAAGCGGGGGCAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTAAAGCGTTGGTGTGATTGGATTTGAGGCTGCTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CCTTTCCACGCGTTTTGCAGAACGATGGTAGTAACGTTTTTATCTAAGTAATACAATTATCATTCAACAATCCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCAGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAACTATTGCTATCGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 42906-42288 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWT010000007.1 Listeria booriae strain FSL L7-0514 NODE_7_length_111940_cov_74.640382, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 42905 30 100.0 36 .............................. GTTGTCTGCTGATGACAGAGCTAGGCTGGGAAGTTA 42839 30 100.0 36 .............................. CAATTTTTTAAGGGTTCATTTAGCTAAAAATAGCTT 42773 30 100.0 36 .............................. CAAACGGATGCAGCCTGGAGCGAGTTTGAGCGTTTA 42707 30 100.0 37 .............................. ATAGAAGATGCTGCTTGGACTTGTTGTTGCACATCTT 42640 30 100.0 35 .............................. AAACTTTCGCATTAAAACTGTGACTGACATATCAA 42575 30 100.0 36 .............................. TCGCGAAATCCACCGCGGCGAAAATATCGCACTGAC 42509 30 100.0 35 .............................. TTGTTTAGTAGTAATGGATATTAACTCTCTTGTTA 42444 30 100.0 36 .............................. CCTCTATTACCTGGTAACCAAACAGAAGGGTCTTGG 42378 30 83.3 32 .G.........G.T..............TG TCGCTGTATCCCCTGGTTTTTTAACGCGTCCA 42316 29 73.3 0 .............T..-.A.G...CC..CA | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 95.7 36 GTTTTTATCTAAGCAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACAAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAACTTTGAAGTACTAGATAAAGAACGCCTCGTTCAGAAAACAACATTTGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAACAATTCCTGCGAATAGCGCATTGATTGTGCAAGACGGGAAGAAAAAGATGATTTCTACAGATAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCGAAATAATGGGGGCATCGACAGATTTTTGTTATGTGTTGGTACTAAAGGGGTTAAGCCTGTTTTCGAGGTTTGGGTTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACTT # Right flank : AATAAGGCATTAGTAAAACGAATTGAATAACAAGAGGGTGAATATCCATTACTAAACAATGGATATCCACCCTCTTATCTATGCCTCTATGTTGAAAATTTTTAGCATGCAATTAACAACAATTACCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTCGCATAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTTACAGTAAGGCTAATTTTCGCTACGTCTCCAGAAAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCGAGCGTGGTGATAGAACCGGTTCCTGCTATCTGATTGGAAAGGGGAACCGTTTTTGTATCCAGTATTCTACCATTGGTATCATATGCAGTTAGTGTGATAGTGTCCGTATTTTTTAAAATCACTCGTTTCGCATAATACTTGAA # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 46845-46153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWT010000007.1 Listeria booriae strain FSL L7-0514 NODE_7_length_111940_cov_74.640382, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 46844 30 100.0 38 .............................. GTCAATATGCTGTCTAAGCAATGTCATGACGCTAGAAT 46776 30 100.0 36 .............................. ACACAAATTGCAGAACCAGAAAAAACAGTCAGCGAT 46710 30 100.0 36 .............................. TTGGGCTTCTCTAAGGTTAGAGGTTAAACAGGCATC 46644 30 100.0 35 .............................. CTACAAATTGGATGTATACAGGTATCACAAATGAA 46579 30 100.0 36 .............................. GAAGCAAAAGAAAAAGTACCGTCGAGAATTACTGAC 46513 30 100.0 37 .............................. GCGTTAGTTGTGGTTCCGCAAGTTGTTAGTGATTTTA 46446 30 100.0 36 .............................. TACAGCAGCTTTAAAAAAGTAATACAGCAATCTAAC 46380 30 96.7 37 A............................. TTGATAGATTTGCGATAGCTCGGAATAACAGCAATCA 46313 30 96.7 36 ...............G.............. TTTTTTAAGTATAGTAAATTCAATTCTTCGGCCTTT 46247 30 90.0 35 CG.................A.......... CCGCGAATATTCGTCAAATGTATCAGCTGATCAAA 46182 30 80.0 0 .................C.A...CA...TC | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 96.7 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCCGTCGGATTCGCAGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGGAGGTGAAAAAAATAAGTAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTAGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCAAATAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGATGACTACGGAAATATATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACGCATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAACTCCTTTAACAAATGCAACGGTATAAACGCTCACCTTCTCGTAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATATCCAGCCCATAAAAAAGGATACAAATACTAAAACTACGAGAACC # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 273576-272171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWT010000002.1 Listeria booriae strain FSL L7-0514 NODE_2_length_639244_cov_91.650098, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 273575 30 100.0 36 .............................. GATTTCATGTATGCAATGTGCCGCGCAAGTACCGGT 273509 30 100.0 35 .............................. ATGCGGATAATGCAGAGCATGTGTATAAACATTTG 273444 30 100.0 36 .............................. TAGCACTGTTTCCCTTAAAGCAAGCGTGCGGAGAGC 273378 30 100.0 36 .............................. ACTATTTTACGTATTTGGATGTGATGTACCATGTCG 273312 30 100.0 35 .............................. CGTCAAGCAGTGTCAATGAAAGGTCTGTTAAACCA 273247 30 100.0 37 .............................. TCGCTAAATTGATGTAATAGTGCCACTGCAAAGTTGC 273180 30 100.0 37 .............................. TCTGCACCTGCGGTTGACCCATATTATTTTGGTGCTA 273113 30 100.0 36 .............................. TAGACACACGACACCGCAAAATTAGAGCTCTTTTTT 273047 30 100.0 36 .............................. CTTCCTCAATCAAATGCGCATGTTCAAACTCGAAAG 272981 30 100.0 34 .............................. TTGAAAATGCATTTGTGATTGGTGCTGGTATTCT 272917 30 100.0 36 .............................. GCATTCAACAGCTCTTTGTCAGACAGCAAGCTGTTT 272851 30 100.0 36 .............................. GAGACTCGCCATACCCATCCACATAAATAGAGCGAG 272785 30 100.0 36 .............................. GTGCTAGTTATTGAAGAAGATAAAAGGCAAGAAATC 272719 30 100.0 37 .............................. ACGAATGGGAATGTAGAAGTTGTTGCAATCGGTGCAA 272652 30 100.0 34 .............................. GCTAATCCAACCAAGAAGCTATATCCGCAAATTG 272588 30 100.0 35 .............................. ATGTGTTTCGTAAAGCTTGTTGGGCTTCCTCCATC 272523 30 100.0 36 .............................. AAAAGTGATTGAGTTTGAATCGATTCGTAACGTAGA 272457 30 100.0 35 .............................. TGTCACGATGAACGCTTCATTTTCAAGATAACCAT 272392 30 100.0 36 .............................. GATGGACGAATGACGAGTTCCACATATAAGGGAATA 272326 30 93.3 35 .................A....G....... CCAATCCACCAATTTTCAGTTTTACGGTGTTGCTC ATAA [272305] 272257 30 90.0 27 .............C...A......A..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [272201] 272200 30 70.0 0 ......CC.G.....C.A.....CA...CA | ========== ====== ====== ====== ============================== ===================================== ================== 22 30 97.9 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGGCGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCGAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTATGTATTGGTACTAAAGAGATTAAGCCTATTTTCGGAGTTTGGGTTGTAAGGTTTGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CGGTCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGTCCTCACAAAAAATCCTCGCGATAATCATTAACATACTGATCAAATGAAGTAGCCTCGCGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATTGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATTTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGTATGAATAAATCATCATGTTTCTGAATAT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //