Array 1 461322-462935 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBB01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain LJH#1217 NODE_2_length_732630_cov_41.6096, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 461322 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 461383 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 461444 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 461505 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 461566 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 461627 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 461688 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 461749 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 461810 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 461871 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 461932 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 461993 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 462054 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 462115 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 462176 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 462237 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 462298 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 462359 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 462420 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 462481 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 462542 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 462603 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 462664 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 462725 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 462786 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 462847 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 462908 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 479250-479767 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBB01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain LJH#1217 NODE_2_length_732630_cov_41.6096, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 479250 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 479311 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 479372 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 479433 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 479494 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 479555 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 479616 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 479677 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 479738 29 93.1 0 ............TC............... | A [479765] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //