Array 1 253414-252988 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARMW010000003.1 Listeria booriae strain FSL L7-1848 NODE_3_length_353381_cov_37.854774, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 253413 30 100.0 35 .............................. TCATAAGAGCCCGCTTCTCGGTACCAGACCCCTAC 253348 30 100.0 36 .............................. TCAGCTTATTCTTTCCGTTATAAACCACGATAGCAT 253282 30 100.0 35 .............................. CTCTCATGATTGACGGGACATTGCAAGAGCTTAAA 253217 30 100.0 37 .............................. TACAAAGCATTTAACATTATTTTTGCTTTTTGCTTCT 253150 30 96.7 36 .................A............ ATGGGAACGACTATTATTCATGGCTATGTAAATGGT 253084 30 96.7 37 ............G................. AAAATAGGATGACGGTAGATCAAGGCCAAATGGTAGA 253017 30 93.3 0 ............G...........A..... | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.1 36 GTTTTTATCTAATTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCCTGATTTACGACATAGCAATGGATAACGGCGGTCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAAACCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACGCCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAAGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCTAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCATTGGTGTGATTGGGTTTAAGGCTTTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGATAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGATGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TAGGAAAAGGGCGCACTTATACACCCTGCTTTTTTCCGAAGTACTATGAAACATAACTCGGTCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAAGCAATGTTCGTAGCCAATGTACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGATGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAATTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 297624-297918 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARMW010000001.1 Listeria booriae strain FSL L7-1848 NODE_1_length_1405328_cov_33.982533, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 297624 30 100.0 36 .............................. ATAGACCAGTAAAACCCTTTACTCGACTTTTCGGCG 297690 30 100.0 36 .............................. GTTAGTAACGCAGTTGACTCGCCTTTCCTGTAAATG 297756 30 100.0 36 .............................. TCTTGATACTCGAAAACGTACTCCGCGTCACGAGAA 297822 30 100.0 37 .............................. CCTGATATGACTCAGTTGAGCATAGAGGAGTTGAGGA 297889 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 99.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCAGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGAAAATTCTAAAAATCTGTCGACCGCCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTAAAGCGTTGGTGTGGCTAGATTTGAGACCGTTTTTGGAGGTTGGGTTGTAAGGTTCGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGACGTTGATGAGGTACCT # Right flank : TATCCATTTCATGTAATCCTTTGCTTTATCTGCCGATTGTCTTTATCTAAATAATATGAATCCAGACTAGATTGCTCACAGATGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACG # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 67095-67322 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARMW010000008.1 Listeria booriae strain FSL L7-1848 NODE_8_length_113021_cov_32.595286, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 67095 30 96.7 36 .................A............ CTTATATTTTGAAGGTTTTGGCGACGATATGGCCGA 67161 30 100.0 36 .............................. CTAATCCCTTATGCACGGCTTTGAGTGAATCCTCTA 67227 30 100.0 36 .............................. TAGTGTGCCAGTGCGCCACCTAAACTGTGTCCTGTA 67293 30 83.3 0 .................C.A....A...TC | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 95.0 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCCGTCGGATTTGCCGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCATCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGAGAGAATGGATTAGGATGGTTTTCGAGAGGTTGAAAAAAATAAACGAGTACAAAAAAGATAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGATACCAAATGACTATGGAAAAATTAATACTACAAGTCACCATAGACAGGCCTATCGGATTTAAAGACGACTACGGAAATACCTACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACACATTTGAAGGAATACTTGTCGCGGTCATACACAGAAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAAACGCTCATCTTCTCACAAAATGCCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAGC # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 70570-71190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARMW010000008.1 Listeria booriae strain FSL L7-1848 NODE_8_length_113021_cov_32.595286, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 70570 30 100.0 37 .............................. GCAGATAAAATAGTTACACAGCCATTTAAACGGCACG 70637 30 100.0 38 .............................. AGCCATCGGTTCGCCGTACAATGACTTAGATCCAGACG 70705 30 100.0 36 .............................. TCTAATTCCAAGGCTCGTTTAATTCGTTCATCTGTT 70771 30 100.0 36 .............................. ATTATACGTAGACATTACAGCGAAGGATGTTACGAA 70837 30 100.0 35 .............................. TCTGCTGTAAATCGACCTAAACGCTCTACCGTTTC 70902 30 100.0 36 .............................. AGATATGTCCTGTCAGCTCTGTATGCATTCAGTGAT 70968 30 96.7 35 ....C......................... CAAAATCTCCCTCAAAAGTGCGATAAGTTATGATT A [70978] 71034 30 96.7 35 .................A............ CCGAACAAAGTTGCTGGGGCAACACTAGTAGGGAA 71099 30 96.7 33 ................C............. GTCACTGTATCCCCTGATTTTTTTACGCGTCCA 71162 29 76.7 0 ................-.A.G...CC..CA | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 96.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGCTTTGAAGTACTAGATAAAGAACGCCTCGTTCAGAAAACAACATTTGGCGCGAACCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCATTGATTGTGCAAGATGGGAAGAAAAAGATAATTTCTACAGATAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCGAAATAATGGGGGCATCGACAGATTTTTGTTATGTGTTGGTACTAAATAGATTAAGCCTATTTTCGGAGTTTGGATTGTAAGGTTTGAGAGCGGAAATTTAGCATTTTGCTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGTTACCT # Right flank : AAATAAGACATTAGTAAAACGAATTGAATAACAAGAGGGTGAATATCCATTACTACTAAACAATGGATATCCACCCTCTATTCTATTGACCTCTATGTTGAAAATTTTTAGCATGCAGTTAACAACGATTATCTACTCAAACTAACTACTTTAGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGTGCGCTATCTGTCGTATTAAGGATGACCGTTTTCGCGTAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTATGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCGACTATTTGATTTGCAAGGGTAACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATGTGATATTGTCTGTATTTTTTAAAATCACTCGTTTTGCATAATA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //