Array 1 2696-1867 **** Predicted by CRISPRDetect 2.4 *** >NZ_CANO01000021.1 Streptococcus massiliensis 4401825, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2695 36 100.0 30 .................................... GTAGGATATTGTGTTCCTGACACTTTTTCA 2629 36 100.0 30 .................................... TTGAGCCCGCAAGGTGTTGATGTATTCCTC 2563 36 100.0 30 .................................... ATACTCCTTTTTGCCAATCTGGGTGATTTT 2497 36 100.0 30 .................................... CAATATTGGCTGAATAAAATTAGAACAAAC 2431 36 100.0 31 .................................... TTTTAACTATTATATACCAAAAAATAAATAT 2364 36 100.0 29 .................................... AAAGACGCTGCCAAGAACCTGTCTGACCA 2299 36 100.0 30 .................................... TCTATCCTACGACAAGAACGGCCTTGGGGT 2233 36 100.0 30 .................................... TATTTTCTACCAAGTTCACGGATAAGATAG 2167 36 100.0 31 .................................... AATCCAGACATTCAATTTAAAATTTTGTACT 2100 36 100.0 30 .................................... GTGACCAACTTAAGGATATGATGTTGCATT 2034 36 100.0 30 .................................... TTTTAGCTAATGCTTTTGTTCAGGTCGCAC 1968 36 100.0 30 .................................... CAAGGACTTGTCGGGAAATACATTCAAGCA 1902 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : GGATGACTATTTGACCTATTCTTCTTTTAGGATTTGTTGTCAAAAATTACAAGAATTATGCGAAATTTTTCCTAATCTGAATATTATTATTTTTCCTTCTAATGAGGGCTATCTTTATGTTAATAAAGAAAATATTGAAAATGTGAATATTTTTTCTGACTTGCTTGAGCATTTATATGAATTTCCTTTTATGTATGAAAGATTTATTGGGCAATATCCTTCTAATGATATACTTAGTGAGGAAGAGTTTTTGCATTCTTTGCAAAAGAATGCAGGCTATTTATTCACGACAGATATCGACCATGTAAGTTTATCTATCTCTGATATGGTTGCAATAAAGATTATCAATCATTTGTACCATTATGATAAGAAAATAGATTTTCAGTATCATCGTCCTAATCAGCTTTTAATTAACTTTCTGGAGGACAGTCATTGACATTCGCTCTCGAAGAATTTATAATGAATATACGAGTACAAAAACCAAAAAAGTTTCATTTGAG # Right flank : TAAAGAAAGGGAGGTGAGGATATGACTAAGCGTAAAGCGAGGTATAAGAAAAAGGCTTAACGCTCTAAAGCTAATCACGCTAGCGACTGCAATCGCTGAACTGATTAAAACGCTTCTAGAGTTAGTTAAGCCCTAACCTCACAAGACTAAAAAATCAAATGACTTCTTAGCCAATCCTTTAGGTAAATTATAGCAAAGGAACTGACAAAATGCAAGAAAAAAAGCGACCAAGAGGACGACCAGCAACTGGAAGAATCAGAAATACAAGTTTTAGAATATTTGTCACTGAAAAAGAAAAAGAGATGATAAGACTTAAAGCAAGCCGAAAAGAAAAAAGTATGGTTGATTATATCATAGACTTAGTTAATCAAGATAAAATAAAATAGCGTGCAACTCGCCATCGCCAAATTTTGAGCTACACACTATCACAACATACCTGAAAATCAGATACGCCTTATTATACCACAAGCGTACCGTGATAGTAACAGTACGCTTTTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 38270-39163 **** Predicted by CRISPRDetect 2.4 *** >NZ_CANO01000009.1 Streptococcus massiliensis 4401825, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 38270 36 100.0 30 .................................... CACAAAACTCGCAAACACTTTCCAAGTTGC 38336 36 100.0 30 .................................... TGGACGTTCTGCAAGTAATCGTATTATGTA 38402 36 100.0 30 .................................... GTTGTGGTAGTAGGAAAATCTTCATTTGTT 38468 36 100.0 30 .................................... AAAAGGTATGTTAAAACAACCATTTTATAA 38534 36 100.0 30 .................................... GTTTCAACAATGAGAGTTTCATTGAGTTTT 38600 36 100.0 30 .................................... ACGCGGGAGACCGTGCCGGCCTCGCCGACT 38666 36 100.0 30 .................................... TACGGCCGAGAATAACAGCCTTTGGCTTAT 38732 36 100.0 30 .................................... ATGTAATATCTTGCGCCGCCTTGCTTGACT 38798 36 100.0 30 .................................... TAGCGCTCGTGGCGCTTATCGTGGCAGGCG 38864 36 100.0 30 .................................... CGACATTCCCATCTTTGTATTTTGGATAGT 38930 36 100.0 30 .................................... AAAGTTAAGAGTGTTTCCATGGCTTTTTTG 38996 36 100.0 30 .................................... AATCTAAGGCAGGCCTTGACTGCTAAAGAG 39062 36 100.0 30 .................................... AAGCTATCTGAATGTATTTTTACAGTTGGT 39128 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.8 30 GTTTTAGAGCTGTGTTGTTCTGAATGGTTCCAAAAC # Left flank : ACGAAAAAACTGAAATCAAGTCAGAAATTGAGCGGTTGAGCTCAAAAATTACCGACTTAATTGCTTTTGAATGTTTAGAAAATGAATTGGATTTAGCATATGATGAAATAACGCTTTTAGAACTAGTTAAAGCTCTTGGGGTCAAAATAGAGACCCAAAGTGATACTATTTTTGAGAAATGTCTTGAAATTATTCAAGTTTTTAAATATTTAGCTAAAAAGAAATTGCTCATTTTTATAAATAGTTGTTCTTTCTTTTCAAAAGAAGAAATGTCGCACATAGTTGAGTATATTCAGTTAAACAATATACATGCTTTGTTTATTGAACCGAGAGAAATCTATGATTTTCCGCAGTATATCATGGATGAGGATTATTTCTTAATGGCAAAAAATATGATATAATTATAATAACTAAAAGTTTATTGGGACTAATTCAGGCTGAAGTCTAGCTGGGACGAATAGCGCGATTACGAAATTTTGTAGAAAAAATCATTCTACGAG # Right flank : GGATATTTTCTGGAAACTTTGTTTTTGAGGTGAAAGCCTCCTTTCTCTCAATCATAAAGATAAAATAATACAAAGAAGTACTGAACTTCTTTGTATTTTTAAGTTTTTATTGCATTTGCAATAAAAATAAGTTATACTATATAGGTGAGGAGGTTCTATGACTATTTTACGAGAGATTGGAGTGATTGCTCGGGCGCTGGATGCCATGGCAAATATTGAGTTTCGCCATGTGGATTTGGCAAAAGGGCAGTATCCTTACTTGGTTCGTATCGTGGAAAATCCGGGCATTATCCAAGAGGAGCTTTCAGACCTGCTCAAGGTCGACCGCTCAACTGTGGCACGTTCGGTTAAAAATTTGGAAAGAAAAGGCCTGATTGTGCGCAGGAGCGCCGAGGGCAATCTGAAGAATAAGGAACTTTTTGCGACGGAAGCAGGAGAAAAGGTTTATCCGCTGATTATCGCTGAGCACAGCTATTCCGAGCAAAAGGCATTGACAGGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTCTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //