Array 1 1425969-1426177 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084656.1 Pectobacterium versatile strain SR1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1425969 28 92.9 32 A..T........................ TGGCGTCACGTCAGCACATGCCGAAACCTCAC 1426029 28 92.9 33 ...........TG............... ATGATGTTGAACGCATAGCCCGGCCGGATCTCA 1426090 28 100.0 32 ............................ TGAGAGATCAGCACTCCGTCGTCATCGTTGCA 1426150 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.9 33 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AACCGACGGACGTCGGCGGCACGCTGTTTGGCGGCATGTTTAGCGCGATGTTCGATCTCATCTACTGGTCTTGCGCCGCATCGGGTTTCTGCTTTCTGGCGCTCTTTCGGCTTTCAGGATGGCGTGTTGCCTGGATACTCGCGGGGCTGGTGCAAATCGGTATCAGCGCCCTGTGGCGGATTCAATATTGGCAGGAGTATGAAAACGACAATGTGATACTCTCCCCGATGCCCGGTGAACTGTATGTTTCCATGCTGGTAGGCGCAGGCATGGCCGCCATCGGCATCGTGAAATATCGACACGCTCGGCGCAACCCAGTCGCTCAACGCCCAACCTATGCGAAAGCGGTCGCTGCATTGCTGCTGATCGCGCTTTATCTCGCGCTCCCGCTGCATCTCTACCTGCGTGAACCTCTCCCCTACTGCGCCTTTAGCCCTGACGGCCAGCAGTTAAGTATCTGTCTGGGAGAGAATGATGAGCGGATTATTGTGGAGTGATGG # Right flank : AATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTTGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCAGTCGGGTTGGAATGCCTGGGGTTAATTGAAGTGCGGTTGATCAACCATACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGATGCCTATAAGACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAAAACAAAAGCG # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1435340-1432070 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084656.1 Pectobacterium versatile strain SR1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1435339 28 100.0 33 ............................ TGGCTGTTGAGTTTAAGGCCGGCAACGTTGCGA 1435278 28 100.0 32 ............................ TGGTCGTAAATTTCAGTCGCTGACGAGTAACG 1435218 28 100.0 32 ............................ GTCTGCTGTCGTTGTCACGCCACGCCCAGCAA 1435158 28 100.0 32 ............................ TTCATCCTGCGTCGGCCACACTAGCCGTATAC 1435098 28 100.0 32 ............................ AGGTGATACCGCTTCACCGCATTGTTTTTCAG 1435038 28 100.0 32 ............................ AAGAGACATTTCCTTTCCCGTTAACGGATTCC 1434978 28 100.0 32 ............................ GTATGGATTGATGGTTATGGTTTCTTCTTCCG 1434918 28 100.0 32 ............................ GTTCGACGGTATGTTGGGCAAGTACCCTGACC 1434858 28 100.0 32 ............................ TGTCCGATGATTTGCCCCGGCAAGTCGGAGTT 1434798 28 100.0 32 ............................ ATTCCGGTGATGTCGCCGATAAGGTCAACTCT 1434738 28 100.0 32 ............................ ACTGGAACATTAAACGCTGCATTTCCAGATTA 1434678 28 100.0 32 ............................ CCTACCGTTGCCGTCCCTGATCCCACGCCAGT 1434618 28 100.0 32 ............................ ATTTCGCCCGATCAACGCTATACGTCAGAAAA 1434558 28 100.0 32 ............................ AGTCGTGCCGCTTGATTTGCAACGACAACGTA 1434498 28 100.0 32 ............................ AAGACGACTTCGCTTCCGCTAATTGCGCTTCC 1434438 28 100.0 32 ............................ TGGTCCGGTATAGCCACCAGCGCCAGCACGAA 1434378 28 100.0 32 ............................ GTTCAGATAGAACAACTGGTCAATATCGGCCT 1434318 28 100.0 32 ............................ CCACCAGTCCCCGCACGGCGACGCAGGCGCAT 1434258 28 100.0 32 ............................ ACTCGCGCATCCTGCGGGTTAGCAGTACCCCC 1434198 28 100.0 32 ............................ AGAACTGTAACGTTTGTTGTACCGGCCTCCTC 1434138 28 100.0 32 ............................ GCCTGATGACGCCTTGTCGCGTGGACTCTTTT 1434078 28 100.0 32 ............................ AATGATGTGATTTTTGACGGAACAATCAGGTC 1434018 28 100.0 32 ............................ TGAAAAGGCTAATCTGTTTTCATTGCGCTGTG 1433958 28 100.0 32 ............................ CCATCCAGCGCGCGACGTCTTTACGTGTTTGT 1433898 28 100.0 32 ............................ GTCAGGATGGGGCGGTGATTACGCAAAAGACC 1433838 28 100.0 32 ............................ AGATTTCCAGCCGCATCCAGATACGGGGAATG 1433778 28 100.0 32 ............................ AGAAAAACCCCCGTTGCCAGGGCGGGGTTAAT 1433718 28 100.0 32 ............................ AGGCGCGGGCGCTGGTCAGTTGCATACGTTTA 1433658 28 100.0 32 ............................ TGAACACACAACGTGAAAAAGGGGTTTTACCG 1433598 28 100.0 32 ............................ GTATAAAATGTTTGACACACGGATTGTACGGC 1433538 28 100.0 32 ............................ TGCCATGAGTGCGGCGGTGAGGGCTGCGAGGA 1433478 28 100.0 32 ............................ TGTTTTTTCCACCGCCAGAATCTGCCGCACCT 1433418 28 100.0 32 ............................ TCAGTCGTGTTGTACGGGTAGAACGTCTGGCG 1433358 28 100.0 32 ............................ ACAAGCCAGCCAGCTTCCTGTTTTAATTTCCC 1433298 28 100.0 32 ............................ ATTAAGATAATGACCAACGGCACCCTGAGATA 1433238 28 100.0 32 ............................ AGAGACAGTCGCAAAAATTACATGGCATTACG 1433178 28 100.0 32 ............................ TGATCGGCATGGACGACGCTCAGAATATCCGC 1433118 28 100.0 32 ............................ ACTTGCGGCAGACACACAGAGCCTGAATATTC 1433058 28 100.0 32 ............................ TCTAAGCCTCACTGAAACTAGGTCATGGCTCT 1432998 28 100.0 33 ............................ GCAGGCTACGCAGCGGGCCATATCTGGTACCAA 1432937 28 100.0 32 ............................ ACGTGGGAATCGTCCTCTGTAATCTGGCAATT 1432877 28 100.0 32 ............................ TGTAGATCGGCATTTTTTTGACTCCTTACCGA 1432817 28 100.0 32 ............................ TAGCCTGAGATTTATCTATCCATCGAACCCTA 1432757 28 100.0 32 ............................ GGCACCGTGTAAGCCAGACTTACAGCTTGCGG 1432697 28 100.0 32 ............................ TCAGTGAGATAATCGCCGTCAGGTGTTTTTAC 1432637 28 100.0 32 ............................ GAAATGCCACTTGCGTAGCGCAGCTTCAACGT 1432577 28 100.0 32 ............................ GCGTCTGTTTGTTGGCCGCATGATTTTGGGAT 1432517 28 100.0 32 ............................ AGACCGTATCCATGCCCTCAGCGGGCACGTCC 1432457 28 100.0 32 ............................ TGAGTATTACGGACAATACCGCCGCCGCACAG 1432397 28 100.0 32 ............................ CGGAAGATGAATATAAGCAACACACGGAACTC 1432337 28 100.0 32 ............................ TCATCAGAAAATCTCAATGTTAGATCCGCGCC 1432277 28 100.0 32 ............................ GCCATCGTTAAATCTGGATTCCCACTGCTGAC 1432217 28 100.0 32 ............................ TTACCGACCGACGATGCTGATAGACCGGATGT 1432157 28 100.0 32 ............................ AGACAGTAAGGGATGGTAAAAATATAACAATT 1432097 28 78.6 0 ...........C........T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 55 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGACGGAGGTGCCGGTTCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATCATGTATTTTCTGCCGTAATCGATAATAGCGGTGACGCCAGCGGAATAAATCGCAGGCTAACTATTTGATAAAGAAAAATATAATCGTCAAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCCATTTCACAGGTTTAATAATCAATGAGTTACGGCTAGGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCAACG # Right flank : CGACCTTAAGCGCTGTTGTCTGGCTATTATCGAAGTAGTACTGCGCCAGCGCTCACCCTCGTTAAATGACGCATATTGATGGCCTTATTCCGTAACGTTTTTAAGTAATGAGTTTATTTTAGAGGGAATGAAAAATTGTGGGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAACGAAATAAATAACGATAATATTCATGCCATATTGACTGCGCAGGAAGCGATGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCCTGGAAAACGGCAATATTTGGTTGTACCGACCCCATCTCATCGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1443914-1444600 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084656.1 Pectobacterium versatile strain SR1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1443914 28 96.4 32 ...........T................ TCATTGAAAAGCTGAAGGTGAAAAAAGAACTC 1443974 28 96.4 32 ...........T................ TCGCTTTCGCCCGCACCAAACCATCCCTTGAT 1444034 28 96.4 32 ...........T................ GTACATGCGCGTGGAGTTCCCTGAGACGGGCG 1444094 28 96.4 32 ...........T................ TCACGCATGCGGGGAGGCTCCGCGCGTCTGGA 1444154 28 100.0 32 ............................ ATCGGAACATCTGATAAATTCATCGAACGCCC 1444214 28 100.0 32 ............................ ATCATGCGCACCAAATAAAAATAACTAACTTA 1444274 28 100.0 32 ............................ AATAATTCCGGCACTCATCTTCGTCTCTCGAC 1444334 28 100.0 32 ............................ ATCGCTACAACGAGATAGCACGCAACGCGAAT 1444394 28 100.0 32 ............................ AGTCGGCCGTAAATGAAAGATGCGACCGAAAT 1444454 28 100.0 32 ............................ AAACCCATGAAGATTTCGGACTTTCCGACCAA 1444514 28 89.3 32 .G.........T...A............ CATGCGCCTTGGTTGAGATCAGCTTTCTGAGG 1444574 27 82.1 0 ...........T.C.......-....TG | ========== ====== ====== ====== ============================ ================================ ================== 12 28 96.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCCGCGTGTACAACCATCCCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGACGTGGAAAAACGCAGCGCGCTGCCGTTTGTGCAAATCAAAAGTTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCTCCCGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAATCCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAATCTTAACG # Right flank : GCTTATCGGGATGCGTCGCTGACGCGGCACATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTGGGGTCAGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAATATCTGCATCAACCCGACGTTTATCTGGCGCAGTGCGGTGACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATCGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2837922-2840941 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084656.1 Pectobacterium versatile strain SR1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2837922 29 100.0 32 ............................. GCGCTTAATTGACTGTCAGCAATCCGATCCGT 2837983 29 100.0 32 ............................. TGACTGATATTAATAATGAAAATCTCGGCCTA 2838044 29 100.0 32 ............................. GCGAGCCATGCAATCACTCTCTCCAAGATTTA 2838105 29 100.0 32 ............................. CATGGCGGTTGTCAAATTACTTTGTGGAACGT 2838166 29 100.0 32 ............................. TCCCGCCCAGAAATCGGCGGGATTTTTTTTGA 2838227 29 100.0 32 ............................. AATCGGATCCCTCGCTGGGTCAGTGGCAGGAT 2838288 29 100.0 32 ............................. GCGCAGGCGGCGTTAGAAAATCAACTCCCTGA 2838349 29 100.0 32 ............................. TTTCATCATTCCCTGCTTCTGGCTAAAGATGA 2838410 29 100.0 32 ............................. GTTTCAATCGTGCCATCAGGCATTTTTCTTTG 2838471 29 100.0 32 ............................. CGTTACACGCATCTGCCGCAACTCACGCACCG 2838532 29 100.0 32 ............................. CAGGCGTCCATCAGGTATCAATTCGCGCTCCA 2838593 29 100.0 32 ............................. CAGCACCCATTTGCGCGGGTGTTGGCGTCAGA 2838654 29 100.0 32 ............................. GTATTGAACCTGCTAACGCGCCGTCAACCATT 2838715 29 100.0 32 ............................. CCCTAGGCCGGAAATATTCTGGGTATTGTTCA 2838776 29 100.0 32 ............................. TTCAACCTGAGTTCTGAGTAACTTTTCCGACA 2838837 29 100.0 32 ............................. GTTGCTGTTTTTCTCTCGCTTCTCGCAGGTCA 2838898 29 100.0 32 ............................. GCGCAACTTGCCCCAACAATGGAGCCGCTTAT 2838959 29 100.0 32 ............................. TGTTTTGCCAACAATCGGATAGTCCATAGGTA 2839020 29 100.0 32 ............................. CGAGAGTAGCGCCAGTGGCCATCTGAATTAAC 2839081 29 100.0 32 ............................. CCAGCTTCCCGCACCTGCCGTGGTGGAAGAAC 2839142 29 100.0 32 ............................. TAACGTATATCGATTTATCGCTTATATGGTTA 2839203 29 100.0 32 ............................. CGTTGTCGATGTAATGCCGACCTCGCGACAGA 2839264 29 100.0 32 ............................. CGCAAAAGCGCTGGTCAGGTCGGCTTTTCACC 2839325 29 100.0 32 ............................. CGATCGCGTTCCAGTTATCGTCTCCTGCTGAT 2839386 29 100.0 33 ............................. TTTGCGCATGAGTTCGCATCAACGCTAGCGTAC 2839448 29 100.0 32 ............................. ATTGGCGACATAGTGATCAAGTTCATGGCTAA 2839509 29 100.0 32 ............................. AAACGTCATCAATGATTGTCCAGTTATCGCAG 2839570 29 100.0 32 ............................. ACGAACTGGAATTCAACGTTAGTAACGAAATC 2839631 29 96.6 32 .............T............... CACAGTAGGTCGCCTGCGCCGTCACGCACGGG 2839692 29 96.6 32 .............T............... TTTATGCCGCGCCGCCAGCAAGCCAGCCTTAC 2839753 29 96.6 32 .............T............... GTCTATCTATAACTCTGCATCCCACTCATTTC 2839814 29 96.6 32 .............T............... CGCTGGTCAGTAAGATGACCAGTCTCTATGAC 2839875 29 96.6 32 .............T............... CCCGGTCGGGTCACTCTTATTCTTCGGTATTA 2839936 29 96.6 32 .............T............... CACCCTACGGTTAAGCCTACGGACCTCATGCG 2839997 29 96.6 32 .............T............... GAATCGACGGCACGCAAGGCGTACCAATTCGC 2840058 29 96.6 32 .............T............... TCAAAAAAAATAGAACTTGGGACAGTAACATG 2840119 29 96.6 32 .............T............... TTTTCGTAGCATTTCCTGAATCCACGGGCCGT 2840180 29 100.0 32 ............................. AAGGTGGACGAGATTCAAACGTAAAATCGAAA 2840241 29 100.0 32 ............................. CTGAATAAACCTGATAAATACGGCTACGGCGA 2840302 29 100.0 32 ............................. GCAACGTTCGGCAGGTATTGGGCGAACGCCAT 2840363 29 100.0 32 ............................. GCGCAGAAGGTTGTCACTATGACAATCTACGA 2840424 29 100.0 32 ............................. AAATTCAGATGGTTCAGCAGGCTCAGCAACAA 2840485 29 100.0 33 ............................. ATTCGACCGCTACCCATCGTCGGGATACCACGC 2840547 29 100.0 32 ............................. GGTCTATCTATAACTCTGCATCCCACTCATTT 2840608 29 100.0 32 ............................. AATATGACGCGTTATAGCCTCATATCAGAGAA 2840669 29 100.0 32 ............................. CACACCGTGAAAAAGTTATCCGCAAATTTCCT 2840730 29 100.0 32 ............................. TTACCACTGGTATTTCATACGGGGCGTCCGGT 2840791 29 100.0 32 ............................. AATAGGCAAACGCAGTACCCCAAGGGGCAAAT 2840852 29 100.0 32 ............................. TCGGGACGGCGTTTTTTCATCGCGCCCCCACT 2840913 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCACCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCTCGGTTGCGCGGCAGGCTGGCGGTGTGGTTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCGGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGAGCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCTCCGCACGGAACCAAATCCCGCTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTCATGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCTGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGCTGGGGCGTGAAGAAGGCTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //