Array 1 4373-75 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXDO01000213.1 Xanthomonas oryzae pv. oryzae strain BXO6 contig_213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4372 31 100.0 34 ............................... TGCGGGCCTTTAGCGCGGTCGAGCGCCGCGCGTT 4307 31 100.0 35 ............................... TGGAGCGGCAGTCCTAGCGCTTCAGCGGCGCGCCC 4241 31 100.0 36 ............................... TCGTTATGGCTTATTGACTATAGCGCGCACGACCTC 4174 31 100.0 35 ............................... TCGGTTTCGCCCCGCGCCCGCGCTGTTCGTCATCG 4108 31 100.0 34 ............................... GCGATTACGGCAGCACGAAAGACCAGCGCATAAA 4043 31 100.0 36 ............................... GCAAATGTTACCGTAGGTGCTGCACGCATCTCATGC 3976 31 100.0 34 ............................... ATCCCAAGCCGTGATCAGATCCACGACCCGCCCT 3911 31 100.0 34 ............................... TGGTAGGCAGCGTATGAGCCGCCGCCCGCCACTG 3846 31 100.0 33 ............................... AAGGCCGACGGAGCCAGGGCCATGACCATGCGC 3782 31 100.0 35 ............................... CCATTGCGCAGCTGTGTCAGTAGCGCGTCTAATGT 3716 31 100.0 34 ............................... AGGTTTTGCGCGCTGTCAAAGCGTCTGCACGCGT 3651 31 100.0 34 ............................... CAAACTAACATCGCAGTAAATCCAGCTATTGGCG 3586 31 100.0 35 ............................... TTCCATGCCGACCGACGCTACTGGTTACGTGACCG 3520 31 100.0 36 ............................... AACCTCTACCGCGACAATCGCAATATCGGCGCTCTG 3453 31 100.0 33 ............................... GTCGTAAACGTGGTGAACGATCTGCTCTACCGG 3389 31 100.0 35 ............................... GGATTAACTGCACGGCGTCGGACAGTTCGCCCAAG 3323 31 100.0 34 ............................... CACATCAGCGCATCGAAGCCGGCATTGTGCGCAA 3258 31 100.0 34 ............................... TGGTACTGCGACGGCGGTAGCATCCAGCGCGTCG 3193 31 100.0 36 ............................... CGAAGTCGCGTCGAACGGATCGGAGCACCGCTTGCC 3126 31 100.0 34 ............................... CCTCCCATGTCCTTGAGTCATCGTTGTATCGGGT 3061 31 100.0 36 ............................... CTGCGCGGCCGAGTGCTCGCCCGCGTCGCCAATTTC 2994 31 100.0 36 ............................... ACTGCAAGAAGCCGAGGAGCCACGACATGCACGACG 2927 31 100.0 37 ............................... TGGCCGAGGAGCGCCCAGAAATTCTCCACTGGCGGAG 2859 31 100.0 35 ............................... ATGAAGGGCCAGAGCATCGGCGGCATGCTCGGTAA 2793 31 100.0 35 ............................... ATCGGCCAGGAGGAATAACAACCGCAGCCTTAGCA 2727 31 100.0 34 ............................... TATATCATCTGCCAGGACTTGAACCAGCTCAAAA 2662 31 100.0 34 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACG 2597 31 100.0 35 ............................... CTGCACTGCGTCGCCACGCGCATCGACATTACGAA 2531 31 100.0 33 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTG 2467 31 100.0 35 ............................... GCCATTGCCGCGTACGCCGCGTTGCGCATCGCTGT 2401 31 100.0 35 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGTG 2335 31 100.0 35 ............................... GTCCTGGGACGCCTCGCCGGCAGCGTCGCAGGCAT 2269 31 100.0 36 ............................... CCGTCAGTGGAAGTCGGCGGAGGCCGACGGATGGAG 2202 31 100.0 35 ............................... CATAGCTCGGTTGGACCGAACAACGATCACTGTGA 2136 31 100.0 34 ............................... GCCAGCTCAATCGCCGCCCAGTCAATCGGGTTGA 2071 31 100.0 34 ............................... TTGCTGAGCAATCTCACGCAGCCTCTTGGCCTTA 2006 31 100.0 34 ............................... TTTACTGCGTATTCCGGCGAATTTGATCAGCTAC 1941 31 100.0 33 ............................... GCCTGCCGACCACTTTCAACAAGGGATTGCACA 1877 31 100.0 34 ............................... TTGTCGCAGCAGCCATAGTCATCGCCACAGATTC 1812 31 100.0 35 ............................... AGGCAAGCAACCCACTGCCGGACATTGGAAGCAAG 1746 31 100.0 33 ............................... GTTCACCGACGTTGATAGCCAGCCAGGTGGAGC 1682 31 100.0 34 ............................... ACCTTGTCGAGCTCAACCGCTTTATGCACGAGGT 1617 31 100.0 34 ............................... CAACAACACGCAGATCGAGGCTTAGCACGGGTTT 1552 31 100.0 37 ............................... TGCAAGAGTTGATCAAGTCTGCAACTGATTGGCACAC 1484 31 100.0 36 ............................... TGCATTATGGTCAGTGGCCCACCAAGCAGCTAGACC 1417 31 100.0 35 ............................... TGCTGCATGCTTAGCAGTTGTAATTCCCTCTGCCT 1351 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 1284 31 100.0 35 ............................... TTGAGATAAGCGGCGATCTGGTCGGCCGTGTAACC 1218 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 1152 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 1087 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 1022 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 957 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 891 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 825 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 760 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 695 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 629 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 563 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 499 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 432 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 367 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 302 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 235 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 170 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 105 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 66 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //