Array 1 795558-795708 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059603.1 Levilactobacillus suantsaii strain CBA3634 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 795558 29 96.6 32 ............................T ATTTCCCGCCAGATCAGCGATCCGGCTCTTTT 795619 29 100.0 32 ............................. ATGCGTTTTAACTGGCCTTTGGTCAACTCCGG 795680 29 79.3 0 .......................CTAAAA | ========== ====== ====== ====== ============================= ================================ ================== 3 29 92.0 32 GTATTCCCCACGCATGTGGGGGTGATTCC # Left flank : CAAATGGGGAATGGCCTTCCCCATGTCGCGGTAGGCCTTGTATAACTCGGGGTGGTTGACCACCAGCGCGGTCCGGTACTGCGGGTCGGTCATGTACTGCCGAACCAGTTCTATCAAAACGACGGATTTCCCGGTTCCGGCGGCGCCTTCGATGATGGCGACCGAAGATGGTTTACGGGTCAGGCCTTGAGCAATGTAATCGTTGATTTTGGTGATCATATGCTTCTGGTCGGCGGATAAGTCGTCGACGAAAAACTGTGCTTTTAAGATTTCGTTCATGTTAAACTCCTAGGTTTTCAATTTAGCGTCACTAAAGGTCAATGGTACCACAAATGGGGTGGAAGTCAGTTCTGGCTAGGATAAATTTGGATTCTGACCAGTGAATTTGGATTTCACGTCAGGTCATTATTGATAGGGTATACTAGGGGAACAAAACCCGAACTAATAAAAAACGGTCTCGGGCGAAAATCAAAACGCCGGTTTGACGGGATTTCCTTAGT # Right flank : AAAGTGCAGTGGAAGAGTTATTTTCTACTGCACTTTTACTTGATTGAAAAATGATGTTTCACGTGGAACATGGTTCTATTTCACTGATGCATTTCGTGGGGTCACCATCCACCGGTAAATCGATAAGCCCGTGGCAAGCAAGCACAGGACTAAAGCCAACGTGAAGGCGGTATGCAACGCATGAATAAATAAGTCGGGATGGCCAAACGGGTACGTTGAGACCAGGTGCCCTGCTTGATGACTCATCGACGAGAAGAGGACCGTGGTGGCGGTCGCGATACCAATGACCATGCCGAGTTCTCGGACCAACGCGCTGAGACTGCCGGCGATGCCTAACTCGGTCACGGGGATGGCACTCATCACGATGGTGTTATTGGGCGCTTGAAAGATGCCGTTGCCCAGGCCACCGGTCGCAATGAAGAGCACCAGGAAAGCAAACGGCAAGCCGACCGTCGTGTTCAGGTAGCCCAACTGGCTGAGACTGATCAAAGCTAAGCCAA # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 1070262-1070053 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059603.1 Levilactobacillus suantsaii strain CBA3634 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1070261 26 82.1 33 ....-....-....CCT........... CTTGATGAGCATTTCAGTTGCCCGGTCCATCAA 1070202 28 100.0 33 ............................ TTGCTGGAACTATTGAGGCTGCGCAGCCTGCGA 1070141 28 100.0 33 ............................ AAGGGGGTACTATTGCATATGAGCCACAACCAG 1070080 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 95.5 33 GAATCACCCTCACATACGTGGGGACTAC # Left flank : TTAGGCTGGAAGACACCATCTGAAGTTTTCTTCGGTAAAAAGTTACACTTGATTTGACAATTCGTCACTCTTTATAAATCCTATTATTGTCCTCGAGTAAGAGATTATATACTAACCTAGCACCATTAATATTTTGCCAAATTAGTTTTTCTTGCTCCTTATTTGGTTTTAATCTGAATTTAAACGCTACTATAAAGGCCACGTTATGCCTCCTTTAAGTAATCATCAAGCATATTACCATGTGCTTTATCACAGTTAACTTCAATTTTTATTCTCAATAATTACAACATCTTTCGTTTCCCTCTTTAATTTAAGGTATAGTTCCTTTTGATTCATTTATCAAAAAAAACGTCTTTAATTCCACTACTTTATGGTTGAAGCCACTATTCACAACTTCTAGTACCGCCACACCAGATCACTTTTAACAAAGCAATTACAAGTGTTTGTTAAGTTGATTTTATGTACCAGTCCCTTGTGCATCAAACTTACATACACGGGAA # Right flank : ACTAAACAAATCCCGTCAGACCGGCATTCTAAAAATCGGAAATCGCCGTTTTTGATTAACTCGTTATTTTTAAACGGTGATTTCAAATGTTAAAAACAGTATACTCCTAACAACTTCTATTCTTCAATCAGAACCCTTACCCCATCAAAAAAGGCCAACCCCGGCATCCTAGTCTGTTCCTAGAATCCCGTACTGATCAGCCTGAGTCTTATTTAGTTTTAGTGGTCTTCGACTTTCCGTGATGACCACCACTAGGCGGTGTTAACGGAAGCGTGGTAATAAATCGAGTTCCTTTAGGGTGGTTATCCCGCACCGCAATCGAGCCGTGGTGCAAATCGACGATCCAGTGGGCAATCGACAACCCTAAGCCGTTGCCCCCAGTTTGGCGGGCCCGGGAGGTGTCAATTCGGTAAAAGCGGTCAAAGATACGCTGACGGTCCTTACCCTGAATACCGATACCTTGGTCAGCCACCACCAGTTGCCACCGCCGCGGCGTGATT # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCACCCTCACATACGTGGGGACTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 3 1072954-1073254 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059603.1 Levilactobacillus suantsaii strain CBA3634 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1072954 36 100.0 30 .................................... CTGCAATACGCAGATGAAAACGGCCTGTCA 1073020 36 100.0 30 .................................... CCGTTAGGCGCGGTCGAATTCTGCATCCGT 1073086 36 97.2 30 .........................T.......... ACCTTCACGCAAAAACCGATCACGTTGCCG 1073152 36 100.0 30 .................................... CTAAGTTCAGGATACCTGACCGTGGCTAAA 1073218 35 77.8 0 ...........C...-..G.....TG..A..A...T | AA [1073239] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 95.0 30 GGTTGATGAAGTCATCAAATGACACCTATAAGGAAC # Left flank : CAAGAATTGCAAGGCAACGACGCGCTTTTGTACAGCAAACTTCGACCGACTTAATAAAAAATAATTATGTTATTGCTATTGAAAACCTGAATGTAAAGGGAATGGTTTCTAACCATAAACTCGCAAAAAGTATCGAAGAAGAGGGATTTAATGAGTTTAAGCGAGAGCTTGTTTATAAATCAGAATTCTATGGACGGAAAGTAATTGAAATTGATCGTTTCTATCCCTCTTCTCAAATCTGTTGTGTGTGTGGCTATCAAAATAAAGAGACGAAGAACTTAGCCGTTCGTGAATGGCAGTGTCCTAAATGTGGCACAATTCATGATCGAGATATAAATGCAGCTAAAAATATTCTAAAAAAGGGATTAGAAAAAATCTAATTATACATTTTAACCGTCTGTCCTGGCGGGGATAGCCTGTTTATGAAACTGACGCCTCTATATACTGCTGGTGAGCGGTTTACAAGCGTTGTTGCTGGCAGGAAGTGTAGATGTTTAATA # Right flank : TAGTACAATTAAGACTAAGTAACTGTCAGGTTGATCAATATGGCATGCTGGTGACAAACTAGGACGCCAGGGTTGACCTTTTTTTGATGGATGAGGGTTCCGATTGAAGAATTGAAGTAGGAGTATACTGTTTTTTACATTTGGAACAGGATTTGAAAATGACAAGTTAATCAAAAACAATGATTTCCGATTTTTAGAATGCCGGTCTGGCGTGATTTGTTTAATGTATTCCCCACGTATGTGGGATAATCCGCTGTACTGCCTAAAATGCGCCTTTAAATCTACATAATTCTGCGCCTTAGCCCTTGTGCAACGGTTTGCAGAATTTTTTTAATATGGTAAGCTTTGTTGATCAAGTTAAATCGAAATTGGTACAGGTCTAAGGAGCTTTCTTATGTTAACTATCCGTGATATCGCCGCTAAAGCTGGGGTCTCCGTTTCCACCGCTTCACGCGCGCTTAATAATAATCTACGTATCAGTCAAGCGACGCGCGAACGTA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGATGAAGTCATCAAATGACACCTATAAGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 4 2071589-2071289 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059603.1 Levilactobacillus suantsaii strain CBA3634 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2071588 36 100.0 30 .................................... CGAACTCCGGCAAATCTTGCCCCAGCAAAG 2071522 36 100.0 30 .................................... CATACGCCGATTTTTCCCACCAATTCAACT 2071456 36 100.0 30 .................................... TTACGTGCCCCCATCTTGTTAGTCTCAATG 2071390 36 100.0 30 .................................... GCTTAAATAGTGCCGAGAACCTATTGTGTA 2071324 36 80.6 0 .........................GAA....TCAT | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 96.1 30 GCTTCAGATGCATGGTAAATCTATAAGGTCAAAACC # Left flank : GATTTGAATAAAATTTTCCAGCGCAAACTCCAAGATTTGTTTTTGAAGAGTTTATCGGAAAAACAAGTGGTACAGTTAACTGACGATTGGCAACGGATTATTACCCAAATTTTGGGTGACAGTTATTTACTGGATGTGCCGTTAAACGTTCCGGAAACGCCGGCTTTAGCAAAGTTGGTTAAGTTAAGTGGCCTGCAACTAGAAGAGTCCGTGAATCGGGAACCATATGGTATACTAGAAACGTTAATTAAGACACTTGTGGAGTTAAATGATCAGAAAATGGTTGTTTTGACCAATATTAGCCATTACCTACAGGTCCCGCGACTAAAAATGTTACGGAAGGTAGTGGCAACTACATATTTGCCAGTTCTTGACATCGAATTCTCAGAAAACCGACAAAAAGACTATTTTAAGGAATGCCGCTATCACTTCATTGATCACGACTTTATCCTTTGGTAGTCTGCTTTAGATGATATTTTGATGAGTATATGATGGCTTCA # Right flank : CATAACTAATACCGGGATTAACAAATTGGGTCTTTGTTAATCCCGGTATTTAATCTGTTCAAAAATTTCATACGATAAAATATGGTCCTGATACCCAGCATTCGCCAGAGTATCAGGACCATATTATTTCAGTTAATCTAATGATTGCCGACCAGCTCAATCCGCTGTACCAATCAATTTGGCCACGTCGAGGTTGTCATGCTGTTCGTACGCGAATTGTTGTGCCGGGGTGAAGGGTTGCTTAGGATCCACCGGCCGGGTCAACAAAGTCGTGACTTCGGAACGGCTGACGTTTTTTGGCGCCAGGGCCCGCAGTCCGCCGCCGGGTAGGGGAATCAACGTGTAACCCCGCTGCATCAATTGTTGCTTCAAAGCACGGTATTGCGCCGCTTCTAAGTATTGCGGGGCCAAGTGAACGGTCTCCCCGGTGGCATGTTCCACGTAAGAAGAGTTAAGCCAAACAGCAGTCGTTGTCAAAGTTTGAACCATGATCAGACATC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAGATGCATGGTAAATCTATAAGGTCAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 2079475-2079106 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059603.1 Levilactobacillus suantsaii strain CBA3634 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 2079474 37 100.0 29 ..................................... TTATGTGCACGAACTCCATCGATTGACCA 2079408 37 100.0 29 ..................................... CAGATTCCCGTTGTAAGACAACGCGGCGC 2079342 37 100.0 30 ..................................... CGACCCCGTGGCGACTATGACCCACGTCTC 2079275 37 97.3 29 ....................................G ACTAGATGGGACAGGTATCTTTGTGTCTT 2079209 37 97.3 29 ......T.............................. ACAGACATGGGCTTTATGTTTAGCTCGGA 2079143 37 86.5 0 ................G....AG....A.....C... | A [2079108] ========== ====== ====== ====== ===================================== ============================== ================== 6 37 96.9 29 GCTTCAGATGCATGGTAAATCTATAAGGTCAAAACCC # Left flank : TATGAAGCGATGGACCAGCGGAAAGCGATTAAGTCGTTGCTGGTGGTGAGTAGAGCGACGAATAACTAGATAATGTAAGGTGGGGTCAAAAAATCATATTTTGGTTTTTTGACTCTTTTTTGTTATGAGAAGTCTATAATGTTGTGGAAATTTCTTCTTGAAAGATTCAAGGGAACAGTTTTAAGACGTTAAATTTAGAAAATAGTAGATGAAATTGAATATGACTACACAAGCTGTATGGTACACTAAAGGTGTTAATAAAAAAGCGTATGGAATTAAGTAGTCAAAGAAAGTTATCTTGATCCCCAATAGTCATTGTCCACAGGTCCCTTAATTGAGAATATTGAGGAGGATGATGACGAGGATAGGTTTACTAGCGGTTGACATCAAGTTCTCATAAATTAATAGAAACCGTTTCAACAAATGGCGTTATTACGCCATTTGTTATACTTGATACTATGATGGTTTACTTTAAATGATATTTTGATGAGTATATGATG # Right flank : GATGTGGAATGATTCAGTAGTTATGATTTTTGGATGCATGGTAAATTTACTTAGAAATGTTCAGTATGGTTAAAAATGGCTTTAGTAGTCGGCATTTGGTCGGATTATTAAAGCCATTTTTTGATAATCTAAAAATTTAAAGGGAGTTTCTAGTTAAGAAAGTTGCGGAAATTAAGATACAAGTGTAATTATTATTGTTCAAATTTAACAGCTAAAATAAAATAGTTCTAGACAGATTGAAATGGGGCGCGCTAAACTATAATCAGTAGCTGATATGGAGATTTTAAATCGGGTAAAAGGGGCAATTATAATGGGAAAAAAGTACGGAATCGGGTTAGATATTGGAACGAGTTCCATTGTTTGGTCCGTTGTGGATGAATCTGGTCATTTAATTCGTGTCAAAGGCCAAACGGGATTAGGTGTCCGGTTGTTTCATGAAGGACAAACAGCTGAGGAACGACGAACTTTTCGGACAACTCGACGGCGATTGAGTCGTCGGA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAGATGCATGGTAAATCTATAAGGTCAAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //