Array 1 8482-4793 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJC010000024.1 Streptomyces bohaiensis strain 11A07 NODE_24_length_37210_cov_93.362264, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================== ================== 8481 29 100.0 32 ............................. CGGTCCGTGCCGGACCCGCTGTGGCTGTTCGC 8420 29 100.0 32 ............................. GCACCGGGGACCACCGAAACCAACCCCTACCG 8359 29 100.0 32 ............................. GGGTGTGCCACAGGGTGGGACTCACCCCCCGG 8298 29 100.0 32 ............................. ATGTGTGGGCCGTCGGGGTCGCCGGGGCGCGG 8237 29 100.0 32 ............................. CGCTCCGTGACGAGTCCGGATCTCCCGTCGTA 8176 29 100.0 32 ............................. CGCGCCGGATTCGCGAACGTGGAGGAGTCGAC 8115 29 100.0 32 ............................. GCCCGCGACCGTGCGGCCAAGGAGTTGGCCGC 8054 29 100.0 32 ............................. ACGGACTTCGGTCGGCTGGTGACGGAGCTCGC 7993 29 100.0 32 ............................. TCGTCCGCGGTCCACCCCATCGAATGGTGGAT 7932 29 100.0 32 ............................. GCCGACGAGGAGCGGGCCCGTTCCGAGGAGGC 7871 29 100.0 32 ............................. CCCGGCACCACCCGCCCGGTCGACCCCGGCGC 7810 29 100.0 32 ............................. CGCGCGACCGCACGGCGGTTGCCCGCGCCGCC 7749 29 100.0 32 ............................. CGATGAGCGCCACGCTCCCGCCCCCGGCCCGC 7688 29 100.0 32 ............................. AAGAAGCGCACCACCTGACCGAGCAGGACGGA 7627 29 100.0 32 ............................. CCAGTCGCGGCGCAGCCAGTGCCCGGGGTTGT 7566 29 100.0 32 ............................. GAACCGACCAGTGACCACCCCCGCTGAAACGG 7505 29 100.0 32 ............................. TCGTGGATGACGAAGGCGTCGTCGTCGACCGG 7444 29 100.0 32 ............................. GAGGGCGAGCAGGCGTCGGTAGAGGGGCGGCC 7383 29 100.0 32 ............................. CGGACGACGATGACGTGCAGTTCGGCGAGGGT 7322 29 96.6 32 ............................T TCCCCGCCCGGAGTATCCGGGCCCCACATCCC 7261 29 100.0 32 ............................. AACGACGTGTTCAGAACCCATCCCTTGACCGT 7200 29 100.0 32 ............................. GGCCCGTGGCGCATGGACCAGACCGGCCGTGA 7139 29 100.0 32 ............................. TACACCGGCGCACCGCCGTCGTGGGACATGAC 7078 29 100.0 32 ............................. ATCGGCGTCGACCTGGACGCCGCTGCGGCGAT 7017 29 100.0 32 ............................. CGTGAGCGTCGGATCGAGGCGACCGCCCAGCT 6956 29 96.6 32 ............................C GACCGGAGCCCCGCAATCTCACCCGGTCCGAT 6895 29 100.0 32 ............................. AGCATCAGCCACGCCACGGCGGCGAGGACGGC 6834 29 100.0 32 ............................. ACTCCGGCCCGCGACATCATCGCCGGATACGC 6773 29 100.0 32 ............................. ACGGCCCGCAGCCCTTCGACATGTACGACTGG 6712 29 100.0 32 ............................. GTAGATCCTCCCCGGACGAACTGACTCAGCCG 6651 29 96.6 32 ........................A.... CCGTTTGCTGAGGAGCTTCAGGGTCTCGCCGC 6590 29 100.0 32 ............................. CACGTGACGATCACGGGCTTGAGCAGGATGAG 6529 29 100.0 32 ............................. ACGACCTCCGAGCTCGTAGGCGCCGACTCCTG 6468 29 100.0 32 ............................. GGGTGGTCGGCGCCCGGTATGGGGCGGTATGC 6407 29 100.0 32 ............................. GCCCGGGAGATCACCGTGCTCTCCGGCCTCCG 6346 29 96.6 32 ............................A GGACGCGCATTTCTACCGCCGCGTAGTCCACG 6285 29 100.0 32 ............................. CGCAGTTGGACCACACGGTCCTCAGCCGGCTC 6224 29 100.0 32 ............................. ATTACGCGTGGGTGATCCTCGGTGTGCCCGTG 6163 29 100.0 32 ............................. GATCTTCTCAGGAGCCTCGATGAACGAGCCCG 6102 29 100.0 32 ............................. GTTCGAGTGGGATGAGGAATGGCAGGGCGAGG 6041 29 100.0 32 ............................. GCGCCCAGGACGGCCCAGTGGTGGAGTACTCC 5980 29 100.0 32 ............................. TGCGGCGACATCGGGCCGGTGATCGTGGCGCC 5919 29 100.0 32 ............................. CGCGGGGCAGGCAGCCGCTCATACAGGGAGCA 5858 29 100.0 32 ............................. CTGCCCAGTCCTCGTCTGGGATGCGGATCTGC 5797 29 100.0 32 ............................. CTGACGGAGCCGACGGTGTAGGGGCGCTCCAG 5736 29 100.0 32 ............................. CGGCAAGCTCGGCACGGCTCAGCCAGCCGCTC 5675 29 100.0 32 ............................. ATGTGCAGCGGCATCAGCCGGGCGTACTCGGC 5614 29 100.0 32 ............................. TCGACTTCGACCTCGGGGACCTGTCCGGTGGC 5553 29 100.0 32 ............................. GAGCTGAGCACGCTGCGGCGCAGGGCCACATC 5492 29 100.0 32 ............................. AGGTCGGCACCCCGGTCCCCGACCAGGGCGAG 5431 29 100.0 32 ............................. CGGCGGACATGTTCGGCGTCGACGTCCGCACC 5370 29 93.1 32 T...........................T TCAGCATCGAGGCGGTAGCCGGGTCCGAGGAC 5309 29 100.0 32 ............................. CCCTTGGGGACGTTCCCGGTGTGGAGGACGCC 5248 29 100.0 32 ............................. CAGATCCAGCAGGCCGTCCGCGCCCAACTCCG 5187 29 100.0 32 ............................. CAGCCATGGTCACCGCGACTCTCGAACGCCGA 5126 29 100.0 32 ............................. CACTATCCCGTCACCGCGGTCGAGATCAGGGG 5065 29 100.0 32 ............................. GCGTCCATCAGGTCGACAGTGAGCGGAGGGTG 5004 28 79.3 154 .....T...........-....C.ACA.. TGGGCTACCCCGCCTCGGCGGCGCCTTCCTCTGACCGCCCTCCACCGCCAGCCGCCGGTCAGAGGAAGGCGCCGCCGGAGACCTCGATGCGTTGGGCGGTGACCCAGCGCAGGCCGTCGGTGGCCAGGGTGGCGATGGCGTCGCCGATCTCCTC 4822 29 72.4 0 .G....G.......GC..AA..C....T. | A [4812] ========== ====== ====== ====== ============================= ========================================================================================================================================================== ================== 59 29 98.8 34 GTGTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GATCGTGCAGCCCGGCCCAGAACATGAGCAAGAGTCGAGCGTGCTCCTCGGGGACCTGCAAGGCAGCAGCTAAGCGCGCCCGCAACCCAGCCGGCAGGACGCCGCCCCACACCGCGCCGCAGACCGCTGCCGTATCGATCAGATGTCCGATCAACGCGTACGGCGCGGGCAGCCCCCTCGACTTGCCACACAGGCGCACGTCAACCACACGATCCCCCATAGCTCTCCCCGGATCTCTTGGCTTCACCTCACCACACGGGTCTGACAACGCGTCGGGGAGATGAGAGAACCCGCTGGCAAAGGAATTGCAAAGCGGCCCTGACGTCGCAGGTGGCGAGGCGTTTCCTCCCTCGCGCGAGCGCGGCCTGGAGGACCAACCGAGAGGTTCTCCTCTCCACAGCGCACCCCAACTCGACAGCTCTGGCAGGATGCCACGCATGACCTCCACGACGCATGGCAAAGGATTTGCAAAGCCCTCCTAACGCCGCAGCTCGGGAAGG # Right flank : TCCGGCGAGCACTTGGCGCATCTCGGCGTTGTCCCGCATCGCTCCCCCGTTGAAGTCGGTGGCGGTCGGCCCGGGGGCGATGGAGTTGACGCGGATTCCGCGCGCGCCGAGTTCGCCGGCGAGGGTGCGGCTGAGGGCTTCGACGGCGGCCTTCGAGGCGGAGTAGACCGAGGTGGCGGGGCTGGTGTGGCGGGTCAGCGACGTCGAGACGTTGATGACGCTGCCGCCCTGGGCCAGCAGGGGCGCGATCGCCTGGGTGAGGAAGAACGTCCCCCGGACGTTGGTGCCCATCACGGCGTCGAAGTCCTCGACCGTGACCGCCTCCAGCGGCCCGAAGACCCCCACTCCCGCGTTGTTGACCAGGACGTCGAGCCGCGAGGCTCCCCAGCGCTCCAGCTGCTCGCTCAACTCGGAGGTGAAGGACGGGAAGGAGTCGACGTCACGGATGTCGAGCCGGAGCGCAGCAGCCGTTCCGCCCGCCGCCTGCACCTGCTTCACCG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19384-18745 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJC010000024.1 Streptomyces bohaiensis strain 11A07 NODE_24_length_37210_cov_93.362264, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19383 29 100.0 32 ............................. CCGAGGGTGTGCATCTGGCCACCGCTGTAACC 19322 29 100.0 32 ............................. GCCCACATTACCGATTTCCTCGGACAGACTAT 19261 29 100.0 32 ............................. CCAGGAGCACATCATCGCTGTGCAGTCTCGGT 19200 29 100.0 32 ............................. GAGGTCCAAGGGCCGCTGATGTTCGCCAACGT 19139 29 100.0 32 ............................. CCATCGCCTGGGCGGAAGAGAACGGCCACGGC 19078 29 100.0 32 ............................. TGGTGCGCGCGCTGCTGCACCTGCTCACGACC 19017 29 100.0 32 ............................. ATGTGGAGGGAATGTGTAGAGCGCTATCGGGG 18956 29 96.6 32 ............................C GCCCGGGTCTCCGCCTGGGGAGCGGTCCTGAA 18895 29 100.0 32 ............................. GCTGATCCATGCGCATCGAGACCCGTACCACG 18834 29 100.0 32 ............................. TCCCCGAACCGTCCCCCGGGGACACAACGCCC 18773 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : AACGCTCTCGCCGCCGGTCACACCGGAGCAGCCCCGCCGCCCCTGGTGGCGGCGCCACCGCCACTGACCCCACCCGCACCCGAACCGCCGCCGCAGCCCCTCCACCTCGCCCGCCGGCTGCCCAGCCAGGGCGGCCACATTCCCGCGTCGGCCGAGGTGACCACCACCCGGCTCCCCCGCTGCCCCTCGGCCGGCGCGGCACCACCCGACCCAGGGCCCGCCCGTCACGACGACAGCGACGACCTCACGAAGTGACCGCCGGAAAGCACCCGTGCACGCCACCGGAACCCCGGGCCACGCATGTTTCCGGACTTGCGCCCTGGAGCGCACCACTGATCTGAACTCAACACGCGAGGCCCCGTTTGCGGCGAACGGCGCGCACCGCCCGCGGAGTGAAGCGCCGCGGACTGCCCAGCGCCTCTGGCAAGATGCCGGTATGACCCGATCGACCGATGGCAAAGGATTTGCAAAGCCCTCCTAACGCCCCAGGTCGCGAAGGG # Right flank : ACCATCGGCGTCTCGATCCTCGCTGCCGCGCTGGGTTCCCCGCGCGTGGGAATACTGCGGCCTACCGAGGCGGCCCTGTTCCTACCCGGGCTGCCGCCGCACGAGCGCGGCGGCAGCCCGGGTACGCGCGAACCGAGGTGTCAGGTGGGCTGGGTGGGGCCCGGGACCGTCACCGCAGGCAGGGCCTCCTGCTGCTGCGGGCGGAAGGCGACAAGCGTGAGCCCGTCGAGGTCTACCGGGACGCGGCGGCGTTCGCCGGCCGTGCGCAGCGCATAGCCCTGTTCGTTGGCCTCCGCGTGCACCAGGACCGCTGCACCGGCCCCGACACTCGCGCTGACCACACGCCAGAGTTCATCCCTCACCCGGGCCGACAGGGTGCCGACGTACAGACCCGGAGTGGGTTCGATCATCCAGCGGGTGAGTGCGCCGCGCACGTGGTCGGGGACCGCGGTCGTGGACAGCACCGTGATGGTCGCCAAGGTGTTCTCCCTGCTGCGTCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 24386-22586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJC010000024.1 Streptomyces bohaiensis strain 11A07 NODE_24_length_37210_cov_93.362264, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 24385 29 93.1 32 ...........................TC CAGCATCTCCTGGTACGCCGCGTACGACTGGG 24324 29 100.0 33 ............................. CAGCCGGTCGCGGCGTGACGGTCACCCGATGAG 24262 29 100.0 32 ............................. TTGATTGCTGACATTCCCCGCGGCATGGTCGA 24201 29 100.0 32 ............................. GTGCGCCTTGTAGGCGCGGCGCCAGAGGTTGG 24140 29 100.0 32 ............................. GAGGTGACCACGCGCAAGCCGGTCGACCCGAA 24079 29 100.0 32 ............................. TCCACGGCCGTGAGCTGGATGGCCCATCCGGC 24018 29 100.0 32 ............................. GCTCACCCTGGACGAAGCGGCAGCGGCGATGA 23957 29 100.0 32 ............................. ATGACCCACCACTCAACGCCCCTGCCAACCGG 23896 29 100.0 32 ............................. TCGCCGTACTCGCGCGGCAGCGCACCGAGCGA 23835 29 100.0 32 ............................. ATCCAGCTGCGGGCGGTGATGGTCGTGCGGGT 23774 29 100.0 32 ............................. CCCTCGCGGGCGTCGTCGACCGCCTGGACCAG 23713 29 100.0 32 ............................. ATCGTCACCTCGGCACGCTCGTCGTCGCCGGA 23652 29 100.0 32 ............................. AACTCCCGCGTAGGTCGCCCCGATCCAGCAGA 23591 29 100.0 32 ............................. ATCCGTCACACGCGCGCGCAGGAGATCAGCCG 23530 29 100.0 32 ............................. TACGTGCCCTGCGGAGGCGGGCCGACCGCCGC 23469 29 100.0 32 ............................. AACAGGGCGCTGCCGAGGCCGCCCGCGATCAC 23408 29 100.0 32 ............................. ACTTACGAGTGATTACGCTCATTTTCTCCCCC 23347 29 100.0 32 ............................. TGGGGGGCGTCAACCGCGCCGGAGTGCGGCGC 23286 29 100.0 32 ............................. CGCGAGCGGGTCCGGCAGTACGGCAACGCCGT 23225 29 100.0 32 ............................. ATGGCCGCGTCCCTGTGCAGCAACCTGGAACT 23164 29 100.0 32 ............................. CGGACGTGCCGCGAGTACATCGTGACGGCCGC 23103 29 100.0 32 ............................. CCGTCGTCCCTTCCTGGGTGCCGTTGAGGTAT 23042 29 100.0 32 ............................. GCCTTCTCCGCCAGCTCCGGGCGGGAGCAGGA 22981 29 100.0 32 ............................. TGGTCTGCAGGGTCACGGCCAGGGTGGTGCGG 22920 29 100.0 32 ............................. GCGAACACGCGGGTCCTGAAGTCCGAGGTCCG 22859 29 100.0 32 ............................. CTGATGTGGGGCCAGCTGCTCGCCCGGCTCGC 22798 29 79.3 92 ..............CA.........CAAT GGTGTCAGGCGCAACCCGCCAGGTTTAGTGTGGTGCTGTCCGCCGCGCGAGGCGGACGGCCGTGGGCCTGTGACCAGACGCACGACGAAGTC 22677 29 89.7 32 ..A..........GA.............. TTGAGCAGGGTGACAGTGCAACAGCCGTGAGT 22616 29 82.8 0 A..C..........A.......A.....C | C,C [22589,22592] ========== ====== ====== ====== ============================= ============================================================================================ ================== 29 29 98.1 34 GTGTTCCCCGCGCAGGCGGGGGTGGTCCG # Left flank : CGCTCTACTGGGCGCAGGAGCTGGCGAAGCAGACCGAGGACGGCGCCCTGGCGACCGCCTTCGGTCCGCTCGCCGAGACCCTGTCGCAGCAGGAGGAGACCATCGTGGCCGAACTGGCCGCGGTGCAGGGCCACGCCGCGGACATCGGCGGCTACTACCAGCCCGACTTCGACAAGGCCACCGCCGTGATGCGCCCGTCGAAGACCTTCAACGACGCGCTGGCCACCCTCGGCTGACGCGGGTGGGGGTGGCGGAGCGGGGGCTTGCTCTCCGGCCCCACCACCCCGCACCCCGCACCACCGCTCCACCGCCGACGGCGGGGGAGGCACCCCGCCAGGGACCGCCTCCCCCGCCGTCGGCGCGTGCGGGCGGGGCGCGTGCGGCGCGCTGCCGAAGGCAGCGGACCCGGGCGCACCGACTCTGACAAAATGCCGCCATGACCTCCGCGACCGCAGGCAAAGGATTTGCAAAGCCCCTCTAACACCCCAGGTCGCGAAGGG # Right flank : TCCTGCGGCTGCGACACCGTGGCGGCCTGGGCGTGAGAGTGCACAGCACAGGCCGCCACAGCCTCCTCACTGCCTGGGCTGGCCCGACCTTCTACCGACCCCGCTGGGCCTTCCCGTGTGCCCAAGAGGACTGAGTCCTGCGCCCGTGCCACCTCACTGCTAGATACGCCTGCCTCAGGGAGTCGCCATGCAGAGCCGCAGACTGCACCCCACTGGCCCCCTCCGTCAGAAGAGGCGAATTCGGCCCCAACTCGACCGAATCTCCCAGAAATAACATTGACCACTAACGAACACGGAATCGCTCACCGACTTCACTCACCGGGCGAGGAAGTGTGCAGGTGGAGCCGTGCGTGACGACTCCCGCCGAAACGGAGCCACCCCGTCCAGCCACCGCAGGCCTGCAACAGCGTTGCGGCTAGCTCAAGTTGAGGAGGGTAGGAGGTGCTACTGTCTTGACTCGAGCAGCCGCTCACACCCAACACCCATTAGGAGATGTAATG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCAGGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20695-19627 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJC010000055.1 Streptomyces bohaiensis strain 11A07 NODE_55_length_23855_cov_70.231272, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 20694 29 100.0 32 ............................. GATGCCCATGCCGCGCCCGACGGTGATGACGT 20633 29 100.0 32 ............................. CGGCGGCGGTGCAGGCTGCCGTACCCGCGCTG 20572 29 100.0 32 ............................. GCCTCGTCCCCGTCGTGCGACAGCTCACCGGC 20511 29 100.0 32 ............................. CGAACGGCACAGCCATCCGGGCCATACGGAAG 20450 29 100.0 32 ............................. AGGCCTCCAGCGAACGGTTCCACATAGTGCCG 20389 29 100.0 34 ............................. GTCGAGAGCGGGAAGAACAACATCTCGGTGGACT 20326 29 100.0 32 ............................. GCGATCTACGACCGGATGCACCAGGCCGGGCT 20265 29 93.1 32 .............G..............T CTCGGGGACCAGTTCGGGCTCTCCCTCTACGA 20204 29 100.0 32 ............................. TCGGCCTGGTGCCGTCTGCCACCGTGGAGATC 20143 29 100.0 32 ............................. ACCAGGGTGCCCACCGCGATGCGCACTCGGTC 20082 29 100.0 32 ............................. ACCACCCGCGGCGCGCGGGCGGCGAGCTCCTC 20021 29 96.6 32 ..................A.......... GCCACCGAGGTGGCGACGACGAGGACCAGGAG 19960 29 100.0 32 ............................. GACGCGGCGTTGCGCACCCCTCGGGCCATGCC 19899 29 100.0 32 ............................. AGGGGCCGCGGCCGGCGATCCCGGGCTCACGG 19838 29 100.0 32 ............................. CCGGCCACGGCTCTGGGTGTCGTCGCCGCAGG 19777 29 100.0 32 ............................. GCCAGCCGTCAGGGCCGATCTGCCATGCGCAA 19716 29 100.0 32 ............................. GCCACCGAGGTGGCGACGTCGACGTCGGCGTC 19655 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 18 29 99.4 32 CTGCTCCCCGCACACGCGGGGGTGTTCCC # Left flank : CCTCGGCGGCCTGGCCCGCGTCTGGCTCACCGAGCGCGGGGCCGCCGACGTGCCGCCGCCGTCCGAGGAGCTGATCTTCTGGCTCACGGTCGACACCCTCGCCGCCCAGCTCGACAACGAGGACCCGGCGGGGCTCCAGGAGCTGGTCAGCGGGCTGTCCGCGCAGCACAGCAGCTTCTTCGAGCACGCCTGGCAGGTGGACCACCCGGCCACCACCGAGGTGCTGGAGGCCGTGGGTCGCCTGCACCCGGACGAGTCGCTGGCCAAGGAGGCCCGCGCCGCCGCCGAACGCGCCCGCAGCCGCACCACCGACTGACCCCGCGCAGCCGCGCACTCCGACCGCGCCGCACCCCGACCGCGCCGCCCCGGACCGGGCTCCCCGCCCGGGGCGGCGGCGGTGGCGGTCGACTGACGCGAGGAGAGGAATGGGAGAAATGCCGGAGTTTGGCAAAGTAAGTAAAATCCTGTTACTCGCCAGTTAACGCACCAGGTCGCGCACT # Right flank : GACCGCATCCGTGAGTGCTCCGCGCCGCTCCTGCGCCATGCAGGCATGCCTGTCTGCTTGGTACGCGCTGCTGGCGTGGCACACCGTCAGTAGAATCTAGAGAATCAGTTGACATCTCGTTAATACTTCGTAGGGTTGAGGTGTCTCGTGAACCGCGAGGCGCCCGCCGGGCCATAGGTGGTCTGTGTGGGGGTCGCTCACCCGTGCTGCCTGGCGCGAACTGAGCAGTGACGGGCCCTCTGCGGCGCCAGGTGTCGGGCACGCTTGCCTGGGGCGTGCCGCCGTGAGCTTTCGTGGCCCCCGGCTTGTGCGGCGAAGTGAACGACGGTTCGTCCCTGCCATTGATGACGGAGATCATTCCATGAGCGCTCGTGCGCAGTTGCCGTTTCGGCTGCACCATTACGGCTGGATCGTTGATGATCAAGAGGTGAATCGACGGTTCTACGAGGAGGTTGTCGGGCTGCCGCTGATCGCCACGTGGACCGAGGTCGAGATGATCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7167-6532 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJC010000070.1 Streptomyces bohaiensis strain 11A07 NODE_70_length_21459_cov_93.240041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 7166 30 100.0 36 .............................. AGTGATCGGAGCAACTTTGGGTGTACGGCTTGCGGT 7100 30 100.0 40 .............................. CGGCCATCGCCATCCGGAACTTGGAGTGCGCGCCGGAGGT 7030 30 100.0 39 .............................. CTCACCCGCCGGGCATGGCCCCCGAGAACGGCCACTGGT 6961 30 100.0 37 .............................. CCGCCGGGGCGACCGCGGCACGGACGGCGTGGCGCGG 6894 30 100.0 36 .............................. TTCGACGCGAGAGACGAACGAGGGGCTGAGCTCGGA 6828 30 100.0 37 .............................. AGCGGAGCGACCGCGCGCCCGGGTTGGACGATTGCCG 6761 30 100.0 37 .............................. CCGAACAGCACGCCGGCGAGCTGGTCGAAGTCCCGGG 6694 30 100.0 38 .............................. ACTGGATGCACGATCGCGCCGACCGCGCCGCGCAGCAC 6626 30 100.0 35 .............................. TGTGGCCGCTCGGGGGTGCGCAATGACCGTGTACG 6561 30 73.3 0 ......................CACAAGCG | ========== ====== ====== ====== ============================== ======================================== ================== 10 30 97.3 37 GTCCTCATCGCCCCTACGAGGGGTAGCAAC # Left flank : CGGCGATCTCGTCGGCCGCCACCGCGGCGTCCACATCCGCGAGACCCGCCACCAACCGGAACCGCCCGTCCGCCGCGATCCGCTCCCGCCAAGCGGCGAGCAGCTCGTCGACGAACTCGCCACTGTGCGGCGCGTAGCCCACGTTCACCGACGTGTAGCTCCCACCGCGCCGCCGGTAGCGCGCCAACTCACCGATTGGCGCGTTGTGTTCGAGCGGAAGGCAGCAGTGCTGCTCCCAGAGCAGGCGCGGCGGGCGTGCGGTGGCAGGTGCGTTCGTCATCTCCGCATCCTGCCGCCCACCACCCCCACACGCCACGGCCCGGCTCACACCCCGGCCGATCACCTCCTTCGGCCCCCGGAAACCCGCTACGCTCGGGCCAGGCCCCTGCCCCGGATTTCAGCGACACGCCGGGGTTCCGAGCACTACCGGAGGTTCGCTGAAAAACCGCCCCGCAGCCGCCCCCCGAAGCCACCTCCGACCTGGACCTTCACCATGGGGT # Right flank : CTACGCCGCCAGGGAGAGGAGTTGGGCTCGGGCCTTGCCCGAGCTCTGCTGTTGCAAGCGAGGCAGACTCAGCCGGTGGCCGTACCGGGGGCACGACTCCCGGTCCTTCTCAGCAGATGGGTGAACTGCGTTGCCCCGGAGGCGCCTGGCTCGTTCACCGATCATGAAGAAGATCATCGCCACTGCCGCGCTCGCCGTGGGAAGCCTTGCCCTTGCGGCACCGGCCCACGCGGACAACAACTCCAACTTCGGCGAGGGCGTCAACGCCGCCAACAACTGGAACTTCACTGCGGCGGCTGTCTGTCTGCAGGAAGTAGCAGTCGTCCCCGTTCTGGGGGACTACGTGAGTGACCACGTCAACAACTGCTCGAACGGAAACGTCATCGACCACTCGGGGCGGTGACGGAGTTCCTCCGGTTCGACAGCCAAGCCTGCCTCGAATCGGAGGCCCGGTCGACTGGGTCGGCGTCCCCCACGGTCAGCGCGCCGACGCTCCCACC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 3336-4403 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJC010000071.1 Streptomyces bohaiensis strain 11A07 NODE_71_length_21431_cov_76.071844, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3336 29 100.0 32 ............................. TGCTCCTGGACCTGGGCCAGGGTGACCTGATC 3397 29 100.0 32 ............................. GCATCATGGCCGGACGGGTAGCACGGGTCACG 3458 29 100.0 32 ............................. ATACCGCAACGTTCACTTTGCAAACCACGCTT 3519 29 93.1 32 ...........G................T CGGCTGCGTGGGGCTGGATCGTCGACGCGACG 3580 29 100.0 32 ............................. TCGCCCGCGACCTCGTCGAAGCCCTCGAAGCT 3641 29 100.0 32 ............................. CTCGGGCTCGACGCCAACGGTCAGCGCCAGAT 3702 29 100.0 32 ............................. AGTGACAACGCCAGGGCCTGGTACGGGCACGG 3763 29 100.0 32 ............................. TGGCGCTTGCGCAGCTCCTTCACCGCGGCCCG 3824 29 100.0 32 ............................. CTCATGAACTTCCTCACCGTTACCCCCGAGCT 3885 29 96.6 32 .................A........... GACAGCGTGGCCGTGCTGGCGGGCAGGCACGG 3946 29 100.0 32 ............................. CAGACCACCCGCCCCGCCTCACTGCAAGACGC 4007 29 96.6 32 ..........T.................. CGGACGTAGGCGCCGCCCGCTCTGCTGTCGGT 4068 29 100.0 32 ............................. GCGCAGGACCGGAGCAACAGCAGATTGCAGAG 4129 29 100.0 32 ............................. CCCACCCCGCTTCAGCAACCCCGAAGGGCACC 4190 29 96.6 32 ............................T GAGAGGAGCGCGGCGGCCGGCGGCACCCCGGC 4251 29 96.6 33 .................T........... ATCGCCGACGCGTCGAGCGGGTACCGCTGCGAT 4313 29 96.6 32 ............................A CCCTGCCGCCCCGCACTGCGAACCGGTGCGGG 4374 29 72.4 0 ...........T.GT.T.....G.C..AG | A [4396] ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.1 32 CTGCTCCCCGCACACGCGGGGGTGTTCCC # Left flank : ACCGCCCACCGCCCCGCTTCACCTCCTGCGGCGGCGCCTGCACCACGCCGTCGCCGGTGGTCGCGCCCTCCTCATACCGCCACCCGGCACCGATCCCGGGACCCTCCGCGACCACGCGCTGCCGACAGCCGCCGCCCTCCTGGAGAACCTGCACCGGACCGCCGCCGACCGCACCCGCGACACCTTCGGACGACTGCGCGCCACCGACCCCGAACTCTTCGCCCGCGCCTGGCTCGCCGTCGCCGCCTACACGGACGAACTCGACCGGGCCCTGTGCGCGGAAGCCTGGGCCGACGCCTCCGCCTCACCGCCCGGTCACCCCACGGCCGCCCCAGGCGACGGCACGAGCCGAACCACCCCCCGAGTCGGCCCGAACAGCCCCGCCGCGCCGTATCGTTGCTCCGACGCCGACCACGCGGCCTGGGATGGGTGAAATGCCGGAGTTTAGTAAAGTAAGCAAAATCCAGTTACTCGCCAGTTAACGCCCCAGGTCACGCACT # Right flank : GACGTATGTGAGGCGAAGCACCGTGACGGTGACGATGCGGTTGGAGACGAGGTACATGATCTGACCGGTCCTGCCGAAATCCTGGTACCACACTTCGTCGGAGCCCTTCTTGCCCTTCTGAAAGGGTTGGTCCGGATCTCTTTGAGTGCTTCTTCCAGCTCCCTGCGTGGTCCTGCCGGGAGAGAGTCTCGCTGGCGCGCCGCTTCTGTCACAAACCGGACTTCGTAGGTGCCCGTGCCTACGACTGTTCCCCGCCGTCGGTGAAGACAGACTCGTCGCCGGCCTCGATGCGCCGGATCACTTCAAGGTCGATCTGCTGGTGTTCCGGGTTGGCGTTTCGGCACGCAGGGGTCCACCACTCGGCCACGACCTCGACCAGGCGCCGGTGGTCGTAGGACTGCGCCGCAAAGTCAGCCGCACCGGCGAAGTCCAGCTCGAAGCTAACGCGGTCGTCCGGCGAGAGGGCTGCGAAGACGGCGGGTCCGGTGCGGTCGACCCAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10417-9043 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJC010000105.1 Streptomyces bohaiensis strain 11A07 NODE_105_length_15132_cov_62.858970, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 10416 29 100.0 32 ............................. GGGGCGCGGCCATGGCGGCGGCCGGCCTTGAG 10355 29 100.0 32 ............................. CTGGAACGGGCCCGAAGTCGAGCGTGCGCTGC 10294 29 100.0 32 ............................. CCATCGCGTCTCGATGAGGTCGGCTGTGTCGG 10233 29 100.0 32 ............................. TGCCACGGCCGATGGCCGAAGAGAGGTACGCA 10172 29 96.6 32 ............................T TTGAGGCCCACTTTGGGCACCCCATCAGGCAA 10111 29 96.6 32 ............................T GTGGCGCTGGTCGTCGCCGGGGCCGGGACGGA 10050 29 100.0 32 ............................. CGCAGCCGCATCACCAACTTCACCGGCACCGT 9989 29 100.0 32 ............................. GCGGCGAAGTAGACCAGGGATGCGACGGGCTG 9928 29 100.0 32 ............................. GTGTACCACTGGCCCTTGTACTGGCTGAGCAG 9867 29 96.6 32 ............................G GGAGGAGGTCGCCGCCGCCCGCGCGGAAGCCG 9806 29 96.6 34 ............................G TCACCGATGCCCGGGATTGGATCCTCTGGCCGCT 9743 29 100.0 32 ............................. ACCAAGATGACCCGCGTTCGGCGCGCGGTCGA 9682 29 96.6 32 ............................G ACGGTGAGGCCCTGCTCGTCGACCTGGAAGCT 9621 29 100.0 32 ............................. CCCAGACCGCCCCCGTAAGTGACTCGGGAGAA 9560 29 100.0 33 ............................. GGCGCGGCCGCCGTTCCGTCGCATCTGACTGTG 9498 29 100.0 32 ............................. TGAGGAAGTCGGTGAATCCGGTGTCGCTCACC 9437 29 100.0 32 ............................. CAGTCGCACCGTGCCATGCCTGCCCGTCCCGA 9376 29 100.0 32 ............................. AGCCTGACGTCCAGCAGTACGACGGCCATGTC 9315 29 100.0 32 ............................. CTGGCGACGCGCACCCCGGTCCCGCTCAACCC 9254 29 96.6 32 ..................A.......... CTGGCGACGCGCACCCCGGTCCCGCTCAACCC 9193 29 100.0 32 ............................. GCCTGACGGACCGGAAGTGCACCCCCTAGGAT 9132 29 100.0 32 ............................. ACCTTGTGGGATGTCCTGCGTCTCCATCTCCT 9071 29 86.2 0 ..............A.....A.C.G.... | ========== ====== ====== ====== ============================= ================================== ================== 23 29 98.5 32 CTCCTCCCCGCGCATGCGGGGGTGTTCCC # Left flank : CTCGCCGCTGTCACGCGGCCGGGTCCTGGTCTGCGGCGACGCGGCGGGGCTGCTGGAGCCGTGGACCCGCGAGGGCATCTCCTTCGCGCTGCGCTCGGGACGACTGGCGGGGGAGTGGGCGGTGCGCATCGCCGAGGCCGGGGACGCGGTCGACGCGCGTCGGCAGGCGCTCAACTACACCTTCGCGGTGAAGTCGGGGCTCGGGGCCGAGATGGGCGTCGGGCGGCGCCTGCTCGACATGTTCACCCGCCGCCCCCGCCTGGTGCACTCGGCGCTCATCGGCTTCCGCCCGGCGTGGACGGCGTTCACCCAGATCACCCGGGGCTCCCACACCCTCGCCGGTATCGTCCGCACGTCCCCGGTGGCCCGCAAGGTCCTCGAACTGCGGGACCGCTCGTGAGAGGGAGAGTCCGCGAAGTGGGGAGGTGGGCGAAATGCCGGAGTTTGGTAAAGTGAGTAAAATCCGGTCCCGGCACAGATAACGCCGCAGGTCGCGCACT # Right flank : GGCACGTCCGGAGAGGGAGACACTTGGAGGGCTTCTTGCCCGCGCGCAGGGGTCTCGGAGAGGTGCACCTGTTGCTCGGGGGTGACGGGCGCCAACGCCGCTCCTCGGAAACAAACGGCCGGGTGTGGCGGAGCCCCATCGCGCTTGGTGCGATGGGGCTCCTCGGGTGCTCGCGTTCAGCCGGGGAGTGAACCCGACTTCAAGCCCGCCACGAAGGCCGCGAACGCATCGGCGGGGACCGTGATGGCTGGACCCGCAGGGATCTTTGAGTCACGGACGGGAACGGTTCCAGTGCTTGATGCGATGCCCGGGGCCCATTCGACACACTGGCCTCCGTTGCCTCCGCTGTATGAGGATTTGACCCAGTACGCGGGCTTGAGTTGTGACGTAGTGTTCATGCTTTGTGATCCTCCATGATCTTGCGAATCAAGGCCAGCGATTCGCGTTCGGACAGCGCCGACATGCGAAGCCTGTCAACCATGGCGCTGGCGGATGCCACC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCATGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43589-40756 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJC010000002.1 Streptomyces bohaiensis strain 11A07 NODE_2_length_97391_cov_306.900864, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================= ================== 43588 28 100.0 33 ............................ CGTCTCCGGCGGGTGCTGGTCGACGATGCCGGA 43527 28 100.0 33 ............................ GTCGATCACCCAGACCAACACGTCGTTGCAGGC 43466 28 100.0 33 ............................ CTCCGAGCGCGTCCCGGTTCACCAGCTCCACGG 43405 28 100.0 33 ............................ CACCCAGCGCGGGAAGCGGCAGCGGCCCATGCA 43344 28 100.0 33 ............................ GGGGATGACGCTCCCGGCCAACCGGCTTCTCCC 43283 28 100.0 33 ............................ CGGGAACGACCCCGATCTCTTCACTGGCCACGA 43222 28 100.0 33 ............................ CCCGGGGGCCGCCGCCACAGTCGCGTTCCACCC 43161 28 100.0 33 ............................ CCGGGGCGGGGAGGGAACGAGTCGCCCGGTCAG 43100 28 100.0 33 ............................ GATATCGCCGACGCCATGCAGCCGCGTCTTGTG 43039 28 100.0 33 ............................ GAGGGAGGGCGACATGCCCGAGATCCAGCGCAC 42978 28 100.0 33 ............................ CTGCCGGTTGCCGGCCCCGTTGTCCACCGACCG 42917 28 100.0 33 ............................ TTCATTGCCAATTCGGTCATCACACCGAACAGG C [42908] 42855 28 100.0 33 ............................ GCGCCAGGAGCTCATGGCGCTGCTGGGGAGGGG 42794 28 100.0 33 ............................ CCCGGTGATGGCCCACACGAGGGTGCCGGGCAG 42733 28 100.0 75 ............................ GGCGGGGACGCGCTCCTGCTCCCGCTCGGGCGCGTCGCCCCCGCACCCGCACCCGCACCCGCACCCGCACCCGCA 42630 28 89.3 45 CC...A...................... CGCGTTGACCTGGTGGGCGGTGCCGCGGTCGGCGTCGCCCCCGCA 42557 28 89.3 33 CC...A...................... AGCCATGACCAGGGGAAAGCCGTCGAGCGCGAA 42496 28 100.0 39 ............................ GGACGATGGGAGCGAGCGCGCTGAGCAGACCCTGTCGCC 42429 28 89.3 33 CC...A...................... AGCGCCTGGGTCGACCACGCCGTCGCGCGCGGC 42368 28 100.0 33 ............................ GATGCGGCGCCTGCGGCACGCGACCACCGTGTC 42307 28 100.0 33 ............................ GGCGTCCGCCATCGCGTCGCAGGCGGCCGCGTT 42246 28 100.0 33 ............................ GGCGCTGCTCCTGGTCGGTGTGCAGGGCGGCAC 42185 28 100.0 33 ............................ GTTGGGCGCGACCGGCGAGGAGACGCTCGGGCT 42124 28 100.0 33 ............................ TACGACTGGGTCATCGGGCGGATGAAGCTGCTC 42063 28 100.0 33 ............................ CGCGTTCATGCTGAGCGGGGCCGCCCGCTTGAT 42002 28 100.0 39 ............................ CGGGTCCGGAGCTGGACCCGTGCCCAACCGCCCGTCGCC 41935 28 89.3 33 CC...A...................... GTAGCCGCACGCGACGTCGTGTTCGGCAGTGAG 41874 28 100.0 33 ............................ GGAACCACTCCCCGACGAGATCACCGAGAAGTG 41813 28 100.0 33 ............................ GATGTCCATGCCGACCTGCAGGCCGCGCCGGTC 41752 28 100.0 33 ............................ TGGGTGGATCCCCACCTGGCCGACCTGGCAGCG 41691 28 100.0 33 ............................ GCTCGGCACCCGTGAGCGAAGTGCTGTCGACCG 41630 28 100.0 33 ............................ GAACTCCTGGAACGCCGCGTCGGCCCCGGTGAA 41569 28 100.0 33 ............................ CCCGCACGCGGTGCTGTGCGTCAGGCAGGACAC 41508 28 100.0 33 ............................ CGGGTTGCTGACATCGCCGCCCGCCTCCTCCGG 41447 28 100.0 75 ............................ CCCGGCTCGCATCGAGTGGCCGGTGAGTCGGACGTCGCACCCGCACCCGCACCCGCACCCGCACCCGCACCCGCA 41344 28 89.3 33 CC...A...................... CCTCTACTACTGGGAGCAGAAGGTCGACGGCGG 41283 28 100.0 33 ............................ CTGGAGCGGCAGGGCTACGACCGGCCCACCGCC 41222 28 100.0 33 ............................ GAACAGTGCGCCGCGCTCCCACCGGTTGGTGAT 41161 28 100.0 35 ............................ CCGCCGCCTGTGCGGGGCGAGCTGGTGGTTGCGGG G [41140] 41097 28 100.0 33 ............................ GACGACGCGGTCGCCGCTGAACGCGAGCAGCGC 41036 26 92.9 33 ...........--............... GCTGTCGGTGCGGGCGGTGAGCATGGCCCCGAG 40977 28 100.0 105 ............................ GGCAGCCGTCGCCACGGACTCCGCCGCCCCGCTGTCGCCCCCGCACCCGCACCCGCACCCGCACCCGCACCCGCACCCGCACCCGCACCCGCACCCGCACCCGCA 40844 28 89.3 33 CC...A...................... GTTGGTCTTGCCGGTGCCCATACCGCCGCTGAC 40783 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================================================================================= ================== 44 28 98.4 37 GTCGCCCCCGCACCCGCGGGGATGGTCC # Left flank : CTGGGACGAACGCAGCGGCTCCGTCCCCGCCGGCGTCAACTGGGCCACCCACCCCATGGACCCGCCCACCACCCAGGCAGACATGGGAGAACAGCACATCGCCGTCATCGGACCGGACCTCGACCAGCCCCCGACACCGGACCAACCCCGGTGACCGTCATCGTCCTCATCGCAGCCCCGGAGGGCCTCCGCGGCCACCTCACACGCTGGATGGTCGAAGTCAACGCCGGCGTCTTTGTAGGAAACCCCAGCCGCCGAGTCCGAGACCGCCTCTGGGCACTCCTCGCCGACCGCATCGGCGATGGCCAAGCCGTCCTGGTCGAACCCGCAGCCAACGAACAAGGATGGGCCACCCGAACCGCCGGCCGCGACCGCTGGAGACCTGTCGACTACGACGGCCTCATCCTCTCCGCCCGCAACCGTCACCCATGACGCACCATCGCCAAAACCAACCGACCCTGAACACGCCCTTCCCGCCCTAGCACCGCAGGTCAGCAAGT # Right flank : GCGCGGGGGACACCCTTTGGGGCATTGCGTCCGCGTCGCCCCGGCGGGCCACCGGCCGGGAGACCTGCGGCCGTTCCGCCCACCGAATCCGGGCTGAGCGCCCACCACCACGGCCGCTATCACCGCGCACGTCGTACCCCATCCCGCGAAGCGGACCATCTCTGTACCGCAGACGGTTGCCCCCAAGGCAGCAGCGCCACACCGGGACCAACTCTGCCCACCGCGATCTTGCCCAACTCCTCCCCGGTCCCCCGCCCAGCGCGAAGCGCGAGGTCGGCATTCTGGCGTAGTTGATCGGGCTCGGTTCGATGCTGGGCATCTGTCTCTACAACGGGGCGAGCTGCCGCAGGGTGAGGTTGGTCCGCCAGTAGGCGGCGATCAGCAACACCCGGTCCTCCAACGGCAGGCTCCACGGCCGGCCCCTGCGCACCGGGTCCGCCCCTTCGCGTCGCAGCGCGGTGACCAGCCTGCCGAACTGCCGCGGGCTCAGCGCAGCGAAC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCACCCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGACCCCGCACCCGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 53744-58135 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJC010000002.1 Streptomyces bohaiensis strain 11A07 NODE_2_length_97391_cov_306.900864, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================== ================== 53744 28 100.0 33 ............................ GTTGGTGATGCGGCTGCGGTTTTCGGTCCGCTT 53805 28 100.0 33 ............................ GTGGTTGTCTGCGTTCGGATCGGACTTGCCGTG 53866 28 100.0 33 ............................ CCGACGTGACCACCCCGACCGACCCGACCACCC 53927 28 100.0 33 ............................ GCGGGAGAACTTCCACACCCAGATCTCGCCGAC 53988 28 100.0 33 ............................ GAGTGGCAGCCCACCGGGCCGCCGGCAGGCGAC 54049 28 100.0 33 ............................ GGTGCCGGTGATGAAGCTCTGCTCGATGTCCCT 54110 28 100.0 33 ............................ TGCACGTGGCAGCGACATCGTGGAGGCCATGGT 54171 28 100.0 33 ............................ CGTCTACCGGCCGCTCCAGGCGATGGTGCGGCG 54232 28 100.0 33 ............................ CTCGCCGGGGTTCTCGCCGTCGGCGTCCCCGCG 54293 28 100.0 33 ............................ GTCGAGGAGCTCCATCAGATCACCTCCAGGTAG 54354 28 100.0 33 ............................ GCGACCCAGCGCCGACCGGTCGACCGCGGCCTG 54415 28 100.0 33 ............................ GATCCATCAGGTCGTCTACGCGGGCTCCTCCCA 54476 28 100.0 33 ............................ CTCGGGGTGCCCGACGGGCTGTCGGGCCCGGAG 54537 28 100.0 33 ............................ GGAGGTCCGAAATGGACGACGAACTGACCGCGC 54598 28 100.0 33 ............................ GTCGGCCAGCTCGGACCGGCGGGCGGCGGCCGA 54659 28 100.0 33 ............................ GAGCGGCGCCTGATGGAGCGGCTTGCGCCGGAG 54720 28 100.0 33 ............................ ACCGCACGTGGCGCGCTGGCACAGCTCAAGGCC 54781 28 100.0 33 ............................ GGCCGATCTGCCACAGCGCATCACCGACCGCGC 54842 28 100.0 33 ............................ GTCGATGGCGCAGGTCCAGGCCGTCACGCAGGC 54903 28 100.0 33 ............................ GTCGATGGCGCAGGTCCAGGCCGTCACGCAGGC 54964 28 100.0 33 ............................ GGACAAAGGAGCGCTCGCCCGCGAGGTCCGCAT 55025 28 100.0 33 ............................ CCGGCGCTCTGCACTGCTCATTCGCCCTCCTGG 55086 28 100.0 33 ............................ GTTTGAGGCCGAGGGCTGGCTCCCGATGGGCCT 55147 28 100.0 33 ............................ GGCCCCTGGAGCGCGGCCATCGTGCTGGCGGAG 55208 28 100.0 33 ............................ CAACCAGGGCGTCGTCGTCGGCCACCGACCGGT 55269 28 100.0 33 ............................ GCCATCCGGGTTGTTCTCCGGCAAGGAGTTCAG 55330 28 100.0 33 ............................ TCGCCATGCGGGCGACGCGCCGGGCGTCCCGCT 55391 28 100.0 33 ............................ GCGCGCGGGCAGGTGGTCCTCGATGAGATCACC 55452 28 100.0 33 ............................ CACGGTGGCGTCCTTGGTGACCAGGCTGATGCC 55513 28 96.4 33 .........................C.. CTCCGCGCCGCTCCAACTCCGCGAAGGTGAAGA 55574 28 96.4 33 .........................C.. CTCCGCGCCGCTCCAACTCCGCGAAGGTGAAGA 55635 28 100.0 33 ............................ CCCGATGCCGCCGCCCAGCAGCTCCCCGATGCT 55696 28 100.0 33 ............................ GTGGCCGCTACCGATGAGGCGCCTCACCGCGCG 55757 28 100.0 63 ............................ CCAGCGGTACGACGCCACATACGTGATCGACCGGTCGACCCCGCACCCGCACCCGCACCCGCA 55848 28 85.7 33 CC..CA...................... CGGCATGTCGTCGGCGCCGTCGCCCCAGATGCC 55909 28 100.0 33 ............................ AGAGGCGGGGGCGGTGTTTCCAGCGACGGTGAA 55970 28 100.0 33 ............................ GGGGGTGATCCTCGCCCTTGACGCTGGTCTGGT 56031 28 100.0 33 ............................ GTGGAAGCTCCGACTCACCTCTCCGCCACCCGC 56092 28 100.0 33 ............................ CCCCGCCGAGTTCGGCGGTCAGGTCCCGCGCGG 56153 28 100.0 33 ............................ GTCGATCCGCACGGTCATGGTCTGTTCGGTAGG 56214 28 100.0 33 ............................ GTCGATCCGCACGGTCATGGTCTGTTCGGTAGG 56275 28 100.0 33 ............................ GCTGGGACGAGTGGGAAGGCCAGCTCGCGCTCC 56336 28 96.4 33 .....................G...... GACCCGCTCACTCGTCCGCTGGTCGAGGCGCTC 56397 28 100.0 33 ............................ CTCCCTGCGCGGCAAGGGCCGCCCGCGCCGAGC 56458 27 96.4 33 .....................-...... CCTGCTGTCGATCCTCGCCCCCCGCCCCACGGC 56518 28 100.0 33 ............................ TTTTCCGGTGACGCGGGCACCCGCGGCTACCGT 56579 28 100.0 33 ............................ CTCCGGTCAAGGCGCCCCCGCGCCAGCAGCAGC 56640 28 100.0 33 ............................ CGTGGGCGGGATGGGCAGGATCTCGGTGCCGGC 56701 28 100.0 33 ............................ GTAGCTCACCCGCGATACGCGCGTACTTGGGTC 56762 28 100.0 33 ............................ CGCTTTGACGTGCGCGCTTTTGCCGGAGCCGGG 56823 28 100.0 33 ............................ CTGACCCCGGAGCGGCAGGAGATGCTGCTGCGG 56884 28 100.0 33 ............................ GCAAGATGGGAATGGGGCGCACGGCCCGCCGAC 56945 28 100.0 33 ............................ CCGCGCCTGCCATTCGAGGATCAGGCACGTGGC 57006 28 100.0 33 ............................ GGGCTTCGAGAACGGTGCGGACCGCGCGCTGGG 57067 28 96.4 33 ..............T............. GATCGGCGGCGCGACCATCAGCACGCCCAATGT 57128 28 96.4 33 ..............T............. GTCGTTGCCTCCGGGGGTGCGCCGCTCGCCGCG 57189 28 96.4 33 ..............T............. GACCGAGTTCGCAAGGTTCCTCACACAGCTCAC 57250 28 96.4 33 ..............T............. GCCTGAGCCCGACAGGTCCCCCAGTTCCACGCG 57311 28 96.4 33 ..............T............. GACCGAGGCCCTCCGGGGCGGGGCGCGAGACGA 57372 28 96.4 33 ..............T............. CTCGGCCGGGGGGCCGTCGGTCGCTCGCAGGGC 57433 28 89.3 33 ....C.........T............T CCCGCAGGGTCGGCAGCCCCCGGTATCCCCGGC 57494 28 92.9 33 ....C.........T............. GGGCGGTCGGTCGCCGTGGCCTACCACCCGGAG 57555 28 96.4 33 ..............T............. CGCGGGTCCAGGGCCTTACCATCCACCCCTGAA 57616 28 96.4 33 ..............T............. CTCGACAAGGACGTGCGGGCGGAGACGGACGGC 57677 28 96.4 33 ..............T............. CGCCATCAGCCTCGGCTCCTTGATCAAGAGCAC 57738 28 92.9 35 .............G..T........... CTCGAGCAGGTTGCCCAGTGCGCCCTGGCGGCGGT 57801 28 100.0 33 ............................ GTGCTGCCGTCTCCGGTACGCCCTTACGCGGTA 57862 28 96.4 35 .........................C.. CCCCCCGGGCGAAACCGGGTACGAAACCTGCGGCG 57925 28 96.4 33 .............T.............. CCCGGCACGGCGGCCGGGTCGGGTGGTGCGGAC 57986 28 96.4 33 ..............T............. GAGGATCGGCATCAACCCGTGCGCGACGGCCTG 58047 28 100.0 33 ............................ GCGGCGCCGCCGCAGCCCGGCCGACACCACAAA 58108 28 89.3 0 .G............T..........C.. | ========== ====== ====== ====== ============================ =============================================================== ================== 72 28 98.5 33 GTCGACCCCGCACCCGCGGGGATGGTCC # Left flank : CAGCTGAGTCCGGCAGCGCGAACCTCCGCCGCGCCCTTCGGCCATAACCGCTGGAAAGCCGGAGTCGCTTTCCCGCAGTCGTGGACTCCACAGAGCCAAGCGAAGAACAGCCTGCCCTTACCCGCTCCGCCGGCGACCTCATCCAGCATCTGTTTCGTGGACGGCGCCAGGAACCCGTCCCACATCCGCTCGGCAACCGCCGCCGTGTCCAGAAGGTGCGACAACAACAAGTTCTTCCGGCCGCCGCCCTTCTCCTCAGACTTCCCCCACAACACACCAAGCAACAGATCGACATCCCCGCCCCCTAGCGGCTGCTCTCGCCCCACCCCGCCACACTCCCGCCTCCGGCTAACCTGAGCCACACACTAGAACCCGGCACTGACAACGAGCACTCGCCAACAGCCCCGCCCGACCCAGCCACACCCGGGACCCCGATGCAGCACCAAAGCCAACCGACTCTGAACACGACCAAGCCGCTCTAAAGCACCAGGTCAGGAAGT # Right flank : CCCGCCTCGTGCCGGTGCACCAGCCGCGGGAGACGTCGCCCCGCACCCGCGACCCTGCGGGTCTGGGGACAACTTCCATCATTCGCCGCTCTCAAAGGAACGGCACTTCAATCTCCCGCACGTGGGCGGTGTGGCAGCGGCGGCAGTACGGGCCGGTTCGGAGCGCGGGTCGCCCGCACTCGTCCGTGCACCGGTCGTCGGCGGCAACCGCCGGGCGGGGCGCGGCGGATCGGCGGGCGGTGCCGGATCGGGCGACGAGGTGCCGTCCGCAGAGCCCGGCTGCGGTGACGGGCTCGGAGTCGCAGTCGTCGGCCGCGCACGTCCACGCCTCCTCCTCCGGCTCGGTGTTCGGCGCGGCGGCGGCGGTTGCCGGGTCGGAGTCGAGGTCGGCGATCGCCCGGTCCAGGAGGTCGACGGCGGCGGCGCGCCCGGCGCGAACCGCTGCGTCCCACGGCGAGAGGTCGCCGCAGCGGCGCCGGGAGGCCGCCTCCCCGGCGCGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCACCCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGACCCCGCACCCGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //