Array 1 333249-331600 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT799418.1 Parabacteroides sp. Marseille-P3160 strain Marseille-P3160T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 333248 29 100.0 37 ............................. ATCAAATGCAATCAGATGCCTCTGCAGAATTAGGCAT 333182 29 100.0 35 ............................. GAAAAAAGATATCGAAGGAGGGGAAGTTAAATACA 333118 29 100.0 38 ............................. CGCTTACCGGACTTCGCATCTTGTTCATCCTGGTATGA 333051 29 100.0 35 ............................. TTTCTTTTCCTCCATTCTTTTCAATTTATCGCACC 332987 29 100.0 35 ............................. CAGTAGCAGAGCCGCAAGCCTCCACAGTAGCAGAG 332923 29 100.0 34 ............................. CAGAAGATGGCACAAGTAAATAAATTGGTTCCCT 332860 29 100.0 38 ............................. ATACATGCATTCAGATTTCTACTAAACTCGGATTCTGA 332793 29 100.0 38 ............................. CAGATTCTTTCTTTTCACAGAAATACGGTGGAGCCAAA 332726 29 100.0 35 ............................. CAATCAAACAAATGCAGATGGATCATGTCGATCCG 332662 29 100.0 37 ............................. ACAGATGTCTTTGCGGGCGTGAATGTTTGGTACGACA 332596 29 100.0 34 ............................. TGGGCTAAACCTGATAGGTTTGTGGTCGATAAAA 332533 29 100.0 35 ............................. TTATCGATACAGCCGGCAAGATGCTTGACTACATG 332469 29 100.0 35 ............................. TCATGGCGAGTGTAAACAATACCTGTATGATTGAA 332405 29 100.0 35 ............................. TCGTGGGATATATAATCAAGTCTTGGGCCTAAACC 332341 29 100.0 35 ............................. TTCACAAAACCGAAGTCAAGGCCTATCCATCTACC 332277 29 100.0 34 ............................. TCGTTAGAGATTTACTCTAACAAATCTTCTAATT 332214 29 100.0 35 ............................. ATTTAAGTGCCCGAGGGATTGGTAATTATATAACA 332150 29 100.0 36 ............................. TTGGAGTCAAAAGAAAGGGGTATCCATCCTATTTTA 332085 29 100.0 36 ............................. TACATGGTGCTTTGCCCGTCTCTTTAGGCTCCTTAA 332020 29 100.0 34 ............................. TTCCGGGAATATCCTTATCCGAAATATCATGCTT 331957 29 100.0 37 ............................. CCTTTTTTTACGAAATACAGGCCATCTGGATCACCGG 331891 29 100.0 37 ............................. TTTTTTATCGCCTTGCATGATTGCAAACAATCTAACA 331825 29 100.0 36 ............................. ATTAAAGATTGTAAAACCTTAATTATCAGCTCCACA 331760 29 100.0 36 ............................. CCTGAGATGTTGTAGGAAATATAACGGCGAATAGCA 331695 29 100.0 37 ............................. CTGGCTATAAGTCTTCCAGTACAAGCGAACGATATTG 331629 29 96.6 0 ..............A.............. | A [331612] ========== ====== ====== ====== ============================= ====================================== ================== 26 29 99.9 36 CTTTTAATCGAACCTTATGGAATTGAAAT # Left flank : ATCATTCTATTTATATGTATGTAATTTTGGTATATGATGTTGGGGAGAAACGTGTAGGGAAAATGTTGAAACTTTGCAGAAAATATTTACACTGGGTGCAAAACTCTGTATTCGAGGGAGAGATAACCGAAGTAAAATTAAAGGAACTGACGATAAAAGCAAAAGCCATTATGGACGTTGGGGAAGACAGTATGTTAATTTTCAAAAGTCGAGATGAAAAATGGCTTGAGAAAGAAGTTGTTGGGCTTGAGAAAAATGAGCTGGACAATTTCATTTAGAAACTTGTCAGATTGTTGTCGACTCTCTACCAAAGCGCTCTTTGACATATTGTTTGAGCTTATATAAATATTTATAATATTTATACACAATGGATTATAGAGATAGTCGATGCCCCAGACTTTTCGGGCTATTCGTGATCGACTAATTGAAGTGCTATTTTTCTTGCATCGCATCGATGTTACAGCTATTTTTGACATATATTTGTGGCTGTTCTGCAACGG # Right flank : GTAACATTTGATTATTGACCGGGCGCAAGCCCATAATCTTTTGATGCAAGATATATTAGATAAAATTGCCGAGGCACTGGATGTCCTGTCCCTATAGGAGCCAGTACTGAATTTGAACAAGATGCATCTATTAGTATTATTAATGCATATGATAACTCAGTCTCCATAAACCATTCTCCAACCTCCAACCCTATTTATAAAATAGTTGAACTTTACAACAGTTCATATGCTGCTGTCAATCATTAGATTCTCAATCTAATTGATAAAATAACAGAACTATACGATCGTTTTTTGCAGACTTCGGTATTGACGGGGACTCAGACCTTTTTGCTTTTTGAAGAAATGATTCAGATGACTGATATCGTTAAATCCGAATTCATAAGCTATTTCTGACAATCGTTTGTCACTGAAATGCAGTTTCTCTTCTATCAATTTTATTTTATATAAGGTCATGTACTCCTGAGGGCTTTGCCCTATCTGTTTCTTGAAATATTCACTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGAACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 444520-447868 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT799418.1 Parabacteroides sp. Marseille-P3160 strain Marseille-P3160T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 444520 47 100.0 29 ............................................... ATCAATTGCAGAACTTTATATATGCGATA 444596 47 100.0 30 ............................................... CCCGTATTAAGATAGATTGTAGAGTTCTCG 444673 47 100.0 30 ............................................... AGATGGAAAGGATAAACAATGACGCTTGAA 444750 47 100.0 29 ............................................... TATATAAAGCTTCATAAGCTTTTTACTCT 444826 47 100.0 30 ............................................... AACGATCACCTGGACACGCATCGACTGGCC 444903 47 100.0 30 ............................................... AGGTTGCCAAATATCCATTCAAAGAAATAA 444980 47 100.0 30 ............................................... CGATTTCTTGTTTGCATGAAAAACAATATA 445057 47 100.0 30 ............................................... GATAAATCTCCAGTAAGCAACGAGGAAAGA 445134 47 100.0 30 ............................................... TATTTCCGATCCCTTCATATAAGAAATTTC 445211 47 100.0 30 ............................................... TATGCTAGACCCTACTTTTCTAAACACAAT 445288 47 100.0 30 ............................................... CTTATTCGAATCCATATACATTGGAGAGTC 445365 47 100.0 30 ............................................... AGGTGCGCAAAAACACAGTGGAGCGTTCCA 445442 47 97.9 30 ...............................C............... GTATGTTTACCGATATCCTTACAATTTTAT 445519 47 100.0 29 ............................................... CATTATCGCCAATCTCGGTTTCTTCTGAT 445595 47 100.0 30 ............................................... CGTCTCCTGGTAGGATGAATTGAGGGATAT 445672 47 100.0 30 ............................................... CTTTAGTTACAAATGATATAGCAACGGAAT 445749 47 100.0 29 ............................................... TGGAGTTCACAAGAACGAATCTGATAAAT 445825 47 100.0 30 ............................................... CCATGCCTTTGCATCAATAAGCACCTAATT 445902 47 100.0 30 ............................................... AGATTAAGAGCATTTATTAAGATACTAAAT 445979 47 100.0 29 ............................................... TGGAGTTCACAAGAACGAATCTGATAAAT 446055 47 100.0 30 ............................................... CCATGCCTTTGCATCAATAAGCACCTAATT 446132 47 100.0 30 ............................................... AGATTAAGAGCATTTATTAAGATACTAAAT 446209 47 100.0 29 ............................................... TGGAGTTCACAAGAACGAATCTGATAAAT 446285 47 100.0 30 ............................................... CCATGCCTTTGCATCAATAAGCACCTAATT 446362 47 100.0 30 ............................................... AGATTAAGAGCATTTATTAAGATACTAAAT 446439 47 100.0 29 ............................................... TGGAGTTCACAAGAACGAATCTGATAAAT 446515 47 100.0 30 ............................................... CCATGCCTTTGCATCAATAAGCACCTAATT 446592 47 100.0 30 ............................................... AGATTAAGAGCATTTATTAAGATACTAAAT 446669 47 100.0 29 ............................................... TGGAGTTCACAAGAACGAATCTGATAAAT 446745 47 100.0 30 ............................................... CCATGCCTTTGCATCAATAAGCACCTAATT 446822 47 100.0 30 ............................................... AGATTAAGAGCATTTATTAAGATACTAAAT 446899 47 100.0 30 ............................................... GAAGTACCTGAGAACGAAGGAGAAGAATAA 446976 47 100.0 30 ............................................... GAAGTACCTGAGAACGAAGGAGAAGAAAAC 447053 47 100.0 30 ............................................... AGGTGCGCAAAAACACAGTGGAGCGTTCCA 447130 47 100.0 30 ............................................... GTATGTTTACCGATATCCTTACAATTTTAT 447207 47 100.0 30 ............................................... AACTTCTTGTAACTTTAATGCATATGCGGC 447284 47 100.0 30 ............................................... GCTTCCGAGGCCATATCGTATGAGTCATCC 447361 47 100.0 30 ............................................... GAAGTACCTGAGAACGAAGGAGAAGAACAA 447438 47 100.0 30 ............................................... GAAGTACCTGAGAACGAAGGAGAAGAACAA 447515 47 100.0 30 ............................................... GTAGACTACATTCAACCTTTAATCTCTGAC 447592 47 100.0 29 ............................................... CGAATTCGAGCAGCAATTTAAGTACATAG 447668 47 100.0 30 ............................................... ATTCTCTTCTACACTTAAAATTCCGTTTGA 447745 47 100.0 30 ............................................... CATTAGTTACAAATGATATAGCAACGGAAT 447822 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 44 47 100.0 30 GCTGTTACTAAAGCCAAAGGTACAAACTTTTGAAAGCAAATCACAAC # Left flank : TCTTGTTCCACGATAATCAGTACGTTCCGCTGTTTGAGAAATAGAATTCCCATTTTCAAAATTTCCCAAAATATCCTGACTCATCGGAATGATTCGGCTTCCCATTCCTCGTATTTTATATGGTTTGCCGTTTTCATTTACTTCCAGTAGTGCCCAGCCAACACTATTGGTACCCAAGTCTAGTCCTAAAATATGCTTTTTCATAATTACAATTCATTGTAAATGATGTATAAAATTATGTATAATTTTTATTTCGCAGAATGTTTTTTGCAAATTATTTTTATGTAACTTTGCATATAAATTTTTGAAAGCAAATCACAATAAGGATTATTCCGTTGTGAAAACATTTAAGGCGGGGCAACTCGTCTTCTTTTTTAGAAATCTATAGTACAAATAAAAAATCCCGCATTAAACGGGATTTTTTATTTGTTTAGTAATAGCTTTTTACAGTTCAAAAATAAGGATTAATTGTTTGATTCTTTTTGACTTGTATATATTGT # Right flank : CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTTACTAAAGCCAAAGGTACAAACTTTTGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 3 454729-456848 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT799418.1 Parabacteroides sp. Marseille-P3160 strain Marseille-P3160T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 454729 47 100.0 30 ............................................... CATTAGTTACAAATGATATAGCAACGGAAT 454806 47 100.0 29 ............................................... TGGAGTTCACAAGAACGAATCTGATAAAT 454882 47 100.0 30 ............................................... CCATGCCTTTGCATCAATAAGCACCTGATT 454959 47 100.0 30 ............................................... AGATTAAGAGCATTTATTAAGATACTAATT 455036 47 100.0 30 ............................................... AGATGTTTACCGATATCCTTACAATTTTAT 455113 47 100.0 29 ............................................... CATTATCGCCAATCTCGGTTTCTTCTGAT 455189 47 100.0 30 ............................................... CGTCTCCTAGTAGGATGAATTGAAGTATAT 455266 47 100.0 30 ............................................... CAGATGGAGACTTGAAAGTAATACCCTTAA 455343 47 100.0 30 ............................................... GTATGTTTACCGATATCCTTACAATTTTAT 455420 47 100.0 29 ............................................... CATTATCGCCAATCTCGGTTTCTTCTGAT 455496 47 100.0 30 ............................................... CGTCTCCTAGTAGGATGAATTGAAGTATAT 455573 47 100.0 30 ............................................... CAGATGGAGACTTGAAAGTAATACCCTTAA 455650 47 100.0 30 ............................................... GTATGTTTACCGATATCCTTACAATTTTAT 455727 47 100.0 29 ............................................... CATTATCGCCAATCTCGGTTTCTTCTGAT 455803 47 100.0 30 ............................................... CGTCTCCTAGTAGGATGAATTGAAGTATAT 455880 47 100.0 30 ............................................... CAGATGGAGACTTGAAAGTAATACCCTTAA 455957 47 100.0 30 ............................................... GTATGTTTACCGATATCCTTACAATTTTAT 456034 47 100.0 29 ............................................... CATTATCGCCAATCTCGGTTTCTTCTGAT 456110 47 100.0 30 ............................................... GTATGTTTACCGATATCCTTACAATTATAT 456187 47 100.0 30 ............................................... ACATATTCCCAAAGACGCTTGGAGGTGGTT 456264 47 100.0 30 ............................................... ACATATTCCCAAAGACGCTTGGAGGTGGTT 456341 47 100.0 30 ............................................... GCAAAGGTCGTGGCGCAAAAGTGTTGGGAG 456418 47 100.0 30 ............................................... ACAGAATCAATCGGAGCTATGTTGCAGCTT 456495 47 100.0 30 ............................................... TATGCCAGTAGCCTCTTAGGGCATAATAAG 456572 47 100.0 30 ............................................... ACCGATTGTAGCAAGAACTAAACCAATAGA 456649 47 100.0 30 ............................................... CCTTATTGGCAGCAACCACTATCCAGCTAT 456726 46 95.7 30 ......G................-....................... CAAAGATATGTTCGATATTATTTGGTGCGA 456802 47 97.9 0 .......................G....................... | ========== ====== ====== ====== =============================================== ============================== ================== 28 47 99.8 30 GCTGTTACTAAAGCCAAAGGTACAAACTTTTGAAAGCAAATCACAAC # Left flank : TACCCTACAGCTGTTACTAAAGCCAAAGGTACAAACTTTTGAAAGCAAATCACAACAAAAATCTTTTCAACCATTTTCCCGTCGATGCTGTTACTAAAGCCAAAGGTACAAACTTTTGAAAGCAAATCACAACGATAACTTCAAGGCCCCACGTACTGCAGGTGCTGTTACTAAAGCCAAAGGTACAAACTTTTGAAAGCAAATCACAACCGATTGCCGGTTGAAGATTCTCGACAAAACGCTGTTACTAAAGCCAAAGGTACAAACTTTTGAAAGCAAATCACAACGGGGTCTCCCTTTTCCCGGACGAATTGGCGGCTGTTACTAAAGCCAAAGGTACAAACTTTTGAAAGCAAATCACAACCGTCCGGTCAAGAGCTTGCGATCATATTCGGCTGTTACTAAAGCCAAAGGTACAAACTTTTGAAAGCAAATCACAACAACTTCTTGTAACTTTAATGCATATGCGNATTCTCTTCTACACTTAAAATTCCGTTTGA # Right flank : CTAATAAACACGATTATGAATATACTTGTATGCTGTTACTAAAGCCAAAGGTACAAAGCAACGGAAAAATGAGGTGTTATCTGTTTCTGCTCCAGTATATTTTGAAGCTCTGGTAAGCCCAGCAAGTATATATACAATAGCCCTTATGCCTATAGAAATAGGTGTGAAGCTTCTGTTGCTATCATTCTACTTGTTTTGAATTTATCAGATTCCGAATAAGGATGCTTTTTTGAACGCTTTCGTTTATTTATTTCACATAAATCCTTTTTGCATCCGGAAATACTCAAATTGGTTTTTCGACAGTGACAAGTTAATTTTCTCCGGCCAGTCGAAGATCTTTTCATGGTGAGTCGAAGATCTTCGACCCGCTAGGAAAAGATCTTTTACCCACTGGAAAAAATTAAGCCGAGAAGCGCGAAATCCAGACATATCAGTATGGGGAACAAGGAAAGAATATATCTCATCGTAAAAATGAATGTTAACTGCCTTAGATAAATAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTTACTAAAGCCAAAGGTACAAACTTTTGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 4276518-4273638 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT799418.1 Parabacteroides sp. Marseille-P3160 strain Marseille-P3160T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4276517 37 100.0 34 ..................................... CGGGATTAATCAATGATTTGGAAGACAATTGGTA 4276446 37 100.0 37 ..................................... GTATCAAACAGAAGTTTTTCGATGAGATTTTAGCCGG 4276372 37 100.0 32 ..................................... TCCCTCTTTTATTTTTTGTTAGTCACACTTAT 4276303 37 100.0 38 ..................................... AGTAAAAGCTGGAGAGTATTCCGATTATATCAAATCAA 4276228 37 100.0 38 ..................................... AGATCTTGTGTTAAGATTTTTAAACATAATACATCTTA 4276153 37 100.0 32 ..................................... AATGGCGGGTTAGTGAGGATTATTCCTTATAT 4276084 37 100.0 35 ..................................... GTAAACTTAATTAGTTTATCACTACTTTCATCCTT 4276012 37 100.0 37 ..................................... CTGTCTTTGACGAGACAGGTACACGGAAAAATGCTGT 4275938 37 100.0 39 ..................................... TATCTTGCTAGAGTTGGGAATCGGAACCAACTCAAAATC 4275862 37 100.0 33 ..................................... TTAACAGTGCTTATAATAAGGAGTTAAAAAATT 4275792 37 100.0 36 ..................................... AAAAATTCGTATAATATATACGATGAAAAACATGCG 4275719 37 100.0 35 ..................................... GACTTTTTAAAAGCCTTAGGCACATTTTAGAAAAA 4275647 37 100.0 37 ..................................... TTATAGCAGCCAGGGATATCAAATCAAAATAGGGAAA 4275573 37 100.0 34 ..................................... TGTTTTATGATTCCAAAACTATTTTCGGTCAAAG 4275502 37 100.0 39 ..................................... AATAGACTAATTCGCAATTTCCTGCGGCTACTTCTACAG 4275426 37 100.0 36 ..................................... GTGAATGTGGAAGGTAAATATAGCCTTTCTGTAACT 4275353 37 100.0 36 ..................................... ACTATGATAAATTAGCATTCATCCGGGTTATATTTC 4275280 37 100.0 33 ..................................... GTCTATTGTAGAAAATGAGACTGGCAAAACTGT 4275210 37 100.0 33 ..................................... TCCTATACACCGAAACCGTAAAAGGTTTTAATT 4275140 37 100.0 40 ..................................... TAGGCATAAACGAGGCTTTAGACGCCCTTCGGACGATAAG 4275063 37 100.0 37 ..................................... AATTATGGAATATCTGTGCAAATTTTGAAATCATAAT 4274989 37 100.0 36 ..................................... GGTTACCTTCGAACAGGCATTCATACAAAAATGCGG 4274916 37 100.0 34 ..................................... GAGTAACAGTTTACGATAAGCGGTCAGATTCGAC 4274845 37 100.0 37 ..................................... TTTTTAAAACGTTCATTACTTACGATATGTTGAAGGG 4274771 37 100.0 36 ..................................... GGCAAGTTTACAAAAGAAGAGTGGTCTTTCTTTGCC 4274698 37 100.0 36 ..................................... TTTTTACAAAAATCTCGCCGGAACCGTCAGAGAATT 4274625 37 100.0 37 ..................................... TATGTTTATTTAATCGCAGGTTGCTATTATCAGCAAA 4274551 37 100.0 37 ..................................... TGTATATTCTAACAGAGAACAGTAATCTCATAGTTCC 4274477 37 100.0 35 ..................................... TTAATTTTAAATTCTTTTTGATTGAGGTAAAATGA 4274405 37 100.0 38 ..................................... TTCTTTGAAATATTGGCACTTGCTTATTAACTTATCCT 4274330 37 100.0 36 ..................................... AATAAATTAGCATTCATCCGGGTTATATTTCACAAA 4274257 37 100.0 36 ..................................... TGTGTTAATATTCAACTTGTAAAAAGATAAATTATA 4274184 37 100.0 33 ..................................... TATTATTGGATATCGAATGCAAAACAATATGCG 4274114 37 100.0 36 ..................................... TTTAATGCGACATTGCTCCTTCGACAATGGAACGAA 4274041 37 100.0 35 ..................................... CAAATCCATTTACGTGGGACGGGTTTCAGTTTTTT 4273969 37 100.0 38 ..................................... AAGTAACCAAATAGTCACTATAACACCTACTATAGATG 4273894 37 100.0 34 ..................................... TGAGTCGATAATAGCGATTTGTTCGACGAGTTAG 4273823 37 100.0 38 ..................................... AACAAGCAGCAGCGCTTTTCAGCGCAGCAAAAGTAGAT 4273748 37 100.0 37 ..................................... ACTGCGACAAACTCAATGAAAATTACCTCAATATGGG 4273674 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 40 37 100.0 36 GTCTTAATCCTTATTCTATTGGATATTACTCTATGAG # Left flank : CAGTTCATACCATAGATGTTTCTTCTGCATAGTTTCTTTCTTTATAAAATAAAATTGGCCTCAATAATTTAACAGTCCCATTCGGAATTTGTTTAAGGTAACTTCTGAGTAATTGATAATAAATCAGGATATTAGTAAATCCGCTACTTTCTCCGGATTCAAGGATGAGAATGCAGGGTATAAAATAGCTTATTTGTGTAACAAAATAAGGGTATAAATGATGAAAACTTGTAATGGAATAAGGGTATGATTACTATTTAGATGATTACTCAATGTGATGCCTAACGATTAATTTCTATGGGACAGGTTGATTGTCATTGAGATAATGGAAGCCCCCAAACCCTGCAAAAACTCATAACTATGACTGCGCACAGTCATAGTTATGATTGCATTCGTTCATAGTTATGACTGCGTTCACTCATAGTTACCAATTTTTTAGTGGATAAGCGATGACTTTTTGATGCCTATGGCGCCTGAAAAAAGCTAATATGTAAAAAGAT # Right flank : AGGAAAAACTATAAATTGCTGTGTTCCTTTCTATTAATTAATCAAATTATAGATTTTGTTCAATGGATTCAAAAAAAATGATTGTTTTTTTGAGCCCTCAAAGGTACGAATAAAATCAATACGTCAAAGATCAATTATTTTTTTAAAAGAATAATGTATTCTTTATATGTGTAATCAAATCTATGTCAATACTCTGTCCGATTACTTTCATTGACTGAATATAGTCGGTTGAAATTGGCACTATAATGATACTATCCTTATTCTCATACACACTTTGAACTTCTTTCAAATCATTTTTTATCTCCTCATAGACTGAATTGCTTAGATCTGCAAGGAAAATAGATCGCTGAATGCGTGTGCATCCTTTCTTTAGTAAGTATTTTGAAATATACCTCCTTACTTTATTACTTTCTATATCATACATTACAAAAAACAACATATTGGTAGCAGATCTGTCTTTTTTATTTATTAATCCTAAAATTCGATTCACTCGTTCTTCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTCTATTGGATATTACTCTATGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //