Array 1 242875-235703 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKKY01000036.1 Rhodococcus sp. 1168 contig493, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 242874 29 100.0 32 ............................. ACATCCAACGCAACCTTCATCGCATTGATACG 242813 29 100.0 32 ............................. GCGGATACCAGTTCGGCGCGGACGACGGCTCC 242752 29 100.0 32 ............................. TCTAACTGCCCATTGGGAAATGCTTGTTTACG 242691 29 100.0 32 ............................. GGCACAGGCATGTACACCATCAGCCGCATGTT 242630 29 100.0 33 ............................. TCGAGCGCGGTAGGGCGCTCGAGACTGCGGCGC 242568 29 100.0 32 ............................. ATCAGGCGCACCCAGGATTACGGCCTTCCGAA 242507 29 100.0 32 ............................. TTCCAGTCGGGCCACGAGGGCGTTCACAATGT 242446 29 100.0 32 ............................. AAAAACGTTCGTGGAGCTCTCGCGGACCTGTC 242385 29 100.0 32 ............................. TCACCTCGACCTTGGTCAAGTGGGACAAGAAC 242324 29 100.0 32 ............................. ATTGTCTCCACCGAGACCTTCGGTCAGTGAAT 242263 29 100.0 32 ............................. GCACTCCACAAAATCGGCAACACAACAGAACC 242202 29 100.0 32 ............................. TAAACTAGGCTCAACCAGCTCATACCCAATAG 242141 29 100.0 32 ............................. TCCTGAGTAACCTTGGTCGGGAACTCAGAAAA 242080 29 100.0 32 ............................. AGCCCGACCTTCGACTGTGATGGATTCGGCGC 242019 29 100.0 32 ............................. GGCGATCACCACGTCTTCGCCGATCCCGAACG 241958 29 100.0 32 ............................. ACGGACTCGTTGGCGCAGTTGCAGTCGGTCAT 241897 29 100.0 32 ............................. CACTGCGAACGCCCCATGTGGCGCGGACGGAA 241836 29 100.0 32 ............................. TCGCCACCCGGCATAGGCAGCCCTGGACGGCA 241775 29 100.0 32 ............................. CCGAGCGCCCGGTTGATAGCGCCGGACACTGC 241714 29 100.0 32 ............................. GTAAACATCGACGGATACGACCTCGACCTGAG 241653 29 100.0 32 ............................. GTTGGGGTGGTGATCGGTCCGGTGATGGTGAA 241592 29 100.0 32 ............................. TGAGTCTTGTACCGCCCATCGGCAAGAAAACC 241531 29 100.0 32 ............................. ACTCGCAAGAGACTGGAAGCTCGAAGTCGAAA 241470 29 100.0 32 ............................. TCTGCTGCCGGTTCGGGCGGCGATGGCGGCAA 241409 29 100.0 32 ............................. GGGTGGTTTCGGTGACGTCGACTGGCTCAACT 241348 29 100.0 32 ............................. AAATCAAGATCGACACCGTCACCGGCATCTGA 241287 29 100.0 32 ............................. TGACCAACTTATCGAGTTCCTCGCCCACAATG 241226 29 100.0 33 ............................. TGCTCGGCGAGGACTTCCGCTGTCCGCCCACCG 241164 29 100.0 32 ............................. ATCAGGCGCACCCAAGATCACAGCCTTCCGAA 241103 29 100.0 32 ............................. TCCAGCGGTCGGCAGGTAGATGAATTGCCCAA 241042 29 100.0 32 ............................. TTCTACTCGCTTGCGGGCTTCTTCGCCCGTAC 240981 29 100.0 32 ............................. GAGTTCAAGAATTTGGATGCTCAACAGGATGC 240920 29 100.0 33 ............................. CGACCACGAACCACCATTAGACACCAAAAAGAT 240858 29 100.0 32 ............................. AACCTTTTCCCACCTGAGTTCCAGATCGGGTT 240797 29 100.0 32 ............................. AACAGGTGGAACAGGCCCGACAGCTACACCAT 240736 29 100.0 32 ............................. CTTTTCGGTGGGCTGATCGGCGGTATCGCGCA 240675 29 100.0 32 ............................. TATCCCTCTCCGAGGCAACCTCTCCTCCGTTC 240614 29 100.0 32 ............................. GGATTCGACCAACACAGGATGTGCTTCAGTTC 240553 29 100.0 32 ............................. TGATCGGCGTCGGCCTGGGTGCATCGACGTGG 240492 29 100.0 32 ............................. ACACACGAGCAACAGAGTCGGCGAGAAACCAT 240431 29 100.0 32 ............................. CCGATACTCTCACGCTCCAAGAAAGCCTCATC 240370 29 100.0 32 ............................. ACTAAACCCACCTTTGGCGAGTTCAGTCATTG 240309 29 100.0 32 ............................. GGATCCGACACGGACGCGCGTTAGCGTGTCAT 240248 29 100.0 32 ............................. GAAATGTGCGCATCCGACCGCCACAAACCCTT 240187 29 96.6 31 ............................G CCGGAGATGAAGCCCGTCATGCCGACACCGA 240127 29 100.0 32 ............................. ACGCCGCCGCCTAACCCAACCAAAACCCAAAC 240066 29 100.0 32 ............................. CCACGAACGAATCGGCAACGGATTCGACGTGT 240005 29 100.0 32 ............................. TGCTCGTTCTGAGTGTGCGGATGCTGCCACAG 239944 29 100.0 32 ............................. TGAATGCGAAACTCCGCGACCGCAACATCATC 239883 29 100.0 32 ............................. CCGGTCGGGCTGATCTCCTACAGTCTCGGCGG 239822 29 100.0 32 ............................. TCGTTCGCATCGATGCCGATAAGTGGCAGACG 239761 29 100.0 32 ............................. GGCCCCCAATTCGCTACACGCACCGAACATCT 239700 29 100.0 32 ............................. TCCCATACCTGCCCGCCTGCGGTGTCCAGCGT 239639 29 100.0 32 ............................. GACGACCGCAGCCGAGACCGCGACACCCCCGA 239578 29 100.0 32 ............................. ACCCACAGGTGAGCCTCCAAGTCCAAGAAGTG 239517 29 100.0 32 ............................. GAACCCGACAGCACGCCGGACGCGGACTGCCA 239456 29 100.0 32 ............................. GCGGCACCCTCGGCTACCCAGTGCGCGAGTTC 239395 29 100.0 32 ............................. AGGTACGCCCGTACCGTTTTTCTTGTAGCGGC 239334 29 100.0 32 ............................. GCATCCACAATTTTCGGGTCTGTGGGGATACC 239273 29 100.0 32 ............................. GGCGGCACACAGGTGGCTTAGTCTCCTGTCGT 239212 29 100.0 32 ............................. AGCATCGAAATCAGTTGCGCGATACCGCCGAT 239151 29 100.0 32 ............................. GCAGTCGGGGAAGTCAACGCAACTCTCAGCGC 239090 29 100.0 32 ............................. TCGTCGATGACATTCAGGTCGAGGTCTGTGAC 239029 29 100.0 32 ............................. ACCGCGACCGTGCCGACAACGATCGTCCCGTC 238968 29 100.0 32 ............................. GACAGGTCCAAAAGTTTGTGGTCAAAGTTGAC 238907 29 100.0 32 ............................. AGGGCGCATCGGTGGCAACGTGACCGGCCCAA 238846 29 100.0 32 ............................. CAAGGACTCTCCTACCGAGACATTGGACGACA 238785 29 100.0 32 ............................. TCTGAAACGTCAAGACCGAAGCGGTCGTTGAC 238724 29 100.0 32 ............................. CTCACCTCGCCGCGCAAGGCAGTGATGTGAAG 238663 29 100.0 32 ............................. ACGCCCAACATTCACACCACTCATAACCCACT 238602 29 100.0 32 ............................. GCAAAAGCAAGAAAGACCTTGCACGTATTTCG 238541 29 100.0 32 ............................. ACAGGGGCCATCATCTGCGCCTCCTCCGCGAT 238480 29 100.0 32 ............................. TGAGTTGGCGTTGAAGGCCTTAGGTGTCACTG 238419 29 100.0 32 ............................. CCAGGAGGCACGACCCAACCAGCTCGTGGGCG 238358 29 100.0 34 ............................. CCGATCAACATCTGGGGTTGTCCCCCGCCTCAAC 238295 29 100.0 32 ............................. GAGTAGCCCGCGCCACATACTGGACAGCCTGC 238234 29 100.0 32 ............................. ACAGCCGGCGCATACACCTGCAAATTCCGCAA 238173 29 100.0 32 ............................. AGCCATACTTTTCTAGCCTCCTGGGAGAAGGG 238112 29 100.0 32 ............................. ATTCATGCCAGCAAGAATCAACCCGATAGCGC 238051 29 100.0 33 ............................. CCCACGGATTCCGGGGCCGGTAGGGGTGACCAT 237989 29 100.0 32 ............................. ATCAGAGAAGCGGGCGGCTTGTCGGCTGCGAT 237928 29 100.0 32 ............................. ATTCGGGACAGGCCCGTACGCTGCACCCCACG 237867 29 96.6 32 ............................A CGATATATCGATGCGCGCGGCCGCCCGTTGCG 237806 29 100.0 32 ............................. CTCAGCCGCCGCACCCTGACGCTCCACAGCAT 237745 29 100.0 32 ............................. GCCCATCACGCCGCAAACAATCTCGCAGCCGC 237684 29 100.0 32 ............................. CTCAGGGAACGGCGTCACAGGGGAAGACATCA 237623 29 100.0 33 ............................. CGCCTCGACCTACTAGAGGGTGTCGAAGGCTAC 237561 29 100.0 32 ............................. GCCACAGAGACACGCATAGTCGTGTCCGGCAA 237500 29 100.0 32 ............................. AGTGAGGACATGCCCACGAACTGTCCCGACGT 237439 29 100.0 32 ............................. GCCGACAATCACAAACGCCCACCACCCACACC 237378 29 100.0 32 ............................. GGCGGTCCGTACATCGTTGTGGCGTGGCACAT 237317 29 100.0 32 ............................. CCCTGTGGGGCATATGTTTTGGGCACAGCAAA 237256 29 100.0 32 ............................. AATGCCCGCCGACGCATTAGTGAGCTTATCCG 237195 29 100.0 32 ............................. ATTCGGTTCATCAATATCGACCCACTCCGAAA 237134 29 100.0 32 ............................. GACGCCGCCGTCGTCACAATCGTCTCCGAGTA 237073 29 100.0 32 ............................. CCTCAAGCTCCAAAAACTTTCGGAGCGCATCA 237012 29 100.0 33 ............................. CGTTCATGCTCGCGCAACTGCGGACCCATGTGT 236950 29 100.0 32 ............................. TCACCACCACAGCAGTGCCGTTGGTGAAGGGC 236889 29 100.0 32 ............................. GGAAACGTAGGTCCATACGAGAACGGAAGACA 236828 29 100.0 32 ............................. GGGAGGATCAACCGGTACATCAACCGGGGCGT 236767 29 100.0 32 ............................. GCGTGGCAGGTCGCCCAGGATGTCATCAAGGG 236706 29 100.0 32 ............................. CAAAGCCCACTGAAACATCTGCTCAGCATCAT 236645 29 100.0 32 ............................. TCCCCACCGATGCCGAATCCGTCCGGGAATGG 236584 29 100.0 32 ............................. CCACCATCGAACCCACCGCAGTCGTACCGACG 236523 29 96.6 32 .............G............... GACCGAACAAGGATTTCCTCGGTGCCTTCATC 236462 29 100.0 32 ............................. TTGTCCTGCAGTGCGCGCGACGACATGCCGCC 236401 29 100.0 32 ............................. ACCAGCACCAACCACGTCCCGCCCGCCTTCGC 236340 29 100.0 32 ............................. TGCGGCTGCGGCGACGGTGGCGGCGTGACGGT 236279 28 96.6 32 ....-........................ CTGAACGGCTCCGACGAAACCGGCGCAGAGGC 236219 29 100.0 32 ............................. AGGAACGAGACGGCCGCGGCGAGACCGGCCGA 236158 29 100.0 32 ............................. ACGACGAGTGCTTGACCGGACATGGAAGCGCT 236097 29 96.6 32 .......T..................... ATCGGACTACCTACCAGACGGGGCCTTCGGCA 236036 29 100.0 32 ............................. TGCCGGCGAACTGAAGTCGGGGGCAGCATCAG 235975 29 93.1 32 ......................C...T.. CCGAGCGAGATAGCCGAACATGTGATGGCGGC 235914 29 100.0 32 ............................. GGGGCAAGGCGCTCGAGACTGCGGCGCTCAAT 235853 29 100.0 32 ............................. CCAACACGCATTGAATCGAGTGCCCGCACAAC 235792 29 100.0 32 ............................. CAGTCGTTCAGCGCAACTCGGGCAGGCTCGAA 235731 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 118 29 99.8 32 GTGCTCCCCGCGGACGCGGGGATGAGCCC # Left flank : TTGTCTACTTGTGGGACGACAAAGGCAAAGCTGTGGCTAGCGGCCAGTCTCATGACGGCAAGGATTTCGATGTCCCATGGTGATTCTTATTGTTACCGCTTGCCCGGCAGGCCTTCGTGGGCACCTAACCCGCTGGCTGCTGGAGATTAGTCCTGGCGTGTTCGTCGGAGTCCTGTCTCGGAGGGTGAGGGAGCTGCTGTGGCAGCGGTGCATCGAACTCGTCAAAGATGGTCGAGCAATAATGGTCTTCCCAGCGCGTAACGAACAGCGCTTGGCGTTCCTCGTCCATAGACACGATTGGGAGCCCGTGGATATCGATGGCATCTCGCTCGTCCGCAGACCACATACTGGTGAGGCTCTGGAATCTGGTGCAAAGCCGCGGGCTGGATGGAGCAAGGCCAGCAGGTACCGTAAGGCCCGTGCCCAGCAGAATCGGTTGGATTGAAACAGAAGTGAAGTAGAAACACGCTCGCCCTCTACCTTTATGCTGGTCGGCAAGT # Right flank : ACTGGAACTCGAATTTCACGACTTCTTCGTCGTGCTCACCGCAGCACGCTCCTCACCTATTGCGGGGTTGTATTCAACCGGACGCATTCTGCATGCGATGGCTGTCACGGGTTCTGCTCCTAGGTTCGTTGCCCCGGGTGGTCAAGTCCCGTCGTTCCGTACGGTTGAAGTGCCCTGACGTCGATATAGACTTCCGTCAGTGTTGGACTCAAGGCGATCGTTCCGGCAAAAGCGTTCGAGACCGTGATCACCCTTTTCGGGATCGGCATCATCAGTGGGCGATCATCGTCGCGTGCCAGTTGAATTTCTGGTTGCTCGCCCGGCCCGGGGCGGTAACGCGAGCGAAGCTTCTGATGTTCGATGCACGGTATCCAGGATTCCCCACACTAGGCTTGACGGTATCTGTATTGAAGGCATTCGAAAAGCCTCTTGTCACCTGATTGCAACGCCGATGCCGGCCAATGGATAGCAATTGTGCCGCAACAGGATTCGCACTCCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //