Array 1 45941-44519 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAWK01000007.1 Streptococcus agalactiae strain BSE001 104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45940 36 100.0 30 .................................... TCGTAAAATGATAAGTAATACAATAACACT 45874 36 100.0 30 .................................... TTGGAAAGATGGCAGAGGGGTTAACGCAGC 45808 36 100.0 30 .................................... TTTTGAGTTTTCAACTTATAGAGTGTATTT 45742 36 100.0 30 .................................... ATCTGGAAGCGGTCAAGAAAGCCCAGTATG 45676 36 100.0 30 .................................... ATGGTCAGAAATCGAAGAAAACGAAGTCGT 45610 36 100.0 30 .................................... TAAGAATTTTAGATACTCTACTTGAATGCT 45544 36 100.0 30 .................................... AAGACTTAAAATCGATTAGAATTGATTTTA 45478 36 100.0 30 .................................... AAGACTTAAAATCGATTAGAATTGATTTTA 45412 36 100.0 30 .................................... CCAGTTTAGAAACAGAACAAAACTAACGAA 45346 36 100.0 30 .................................... AGACAAAGAAGATGGCAAGTCTATCAACAA 45280 36 100.0 30 .................................... AGTAGAAACATAACGATAATTCCATGAATA 45214 36 100.0 30 .................................... ATGTTGTAGAATCATATCGACCATATAACC 45148 36 100.0 30 .................................... GCTTGGTCTCGAAGAATTACAGAAGAACAT 45082 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 45016 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 44950 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 44884 36 100.0 30 .................................... GGGTCCAAATCAGCAATCTATGCTAAAAAT 44818 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 44752 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 44686 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 44620 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 44554 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : ATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //