Array 1 88512-92451 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFUS01000023.1 Actinobaculum suis strain U311 R9-3-1_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 88512 29 100.0 32 ............................. CGAAGTGGACGGGTGGCGGAACCGCGGGCACG 88573 29 100.0 32 ............................. ACGATTCAGACCGGCATCGACGGTTTCAGGGT 88634 29 100.0 32 ............................. GGCGTACAACGCGTCATCGACGGCGATCTAGG 88695 29 100.0 32 ............................. AGCTTTATCTTCGCGATCGTGGTCATTACACG 88756 29 100.0 32 ............................. ATATTCATCCCCATCACTTAGCGGCTCGCCCG 88817 29 96.6 32 ............................G GGAGTGGGAAGACTACTGGCTAGGCTGGTCAG 88878 29 100.0 32 ............................. CCCTCAAGCTCTTTTTCATTCAGAGTGCCCAC 88939 29 100.0 32 ............................. CTAGGCCCAATCGGCCCGTAAATCAGGGTTAG 89000 29 100.0 33 ............................. CGAGCAATTGGAACGATCTTGTAGGGATGCGCA 89062 29 100.0 32 ............................. TATTCGCCGATGCTCAAGCCGAAAACACCGAT 89123 29 100.0 32 ............................. CGACTGACCTCCACCCTTCGGGGTTGCGGAGG 89184 29 100.0 32 ............................. GGATGCCTAAGGTCTGGTGAAATCGCCGCTCT 89245 29 100.0 32 ............................. ATATGTCTACGCTGACTACGATCGGGCACACC 89306 29 100.0 32 ............................. CTGGTTCTTAGTTTCACGGGCGGCGGCCTGCG 89367 29 100.0 32 ............................. GTTGTCGGAGTATAGGCGTACTTTCTTCCCGA 89428 29 100.0 32 ............................. GCCCATCACACCGAACTAAGCCGCCCTTCGGG 89489 29 100.0 32 ............................. GCCGTAGGCGATCGATGGGAAGACCTAGGCGC 89550 29 100.0 32 ............................. CGATGGGGTGAAGGGCACCTGGTGGAAAAACA 89611 29 100.0 32 ............................. GTCCTGCGACCGATACCCGGGCCGGTCGTACT 89672 29 100.0 32 ............................. GCCCCCGGTTGGGCATCCACCGAAGGCGTGGA 89733 29 100.0 32 ............................. AAAACAAGGACCCCTCAAGGCGAAGACGCGAA 89794 29 100.0 32 ............................. CAAAGTATGGGATTTGGCGGAGTCCAACCTGA 89855 29 100.0 32 ............................. CGCAAAAGCCGATGAGGTAGCCAATTTGGCGG 89916 29 100.0 32 ............................. CAGGGAGGGGCCGTCATGGTTATAGAAGCAAG 89977 29 100.0 32 ............................. GTCCAAAATCTTGGCTAGGTCTATGGGGCTGA 90038 29 100.0 32 ............................. GTTTTCTCGCTCTCGCTAGGTTTACGGTCCTT 90099 29 100.0 32 ............................. CTGTGTTTTCTTCACCGCCGGTTTCCGCTTGG 90160 29 100.0 32 ............................. GTCAGCGACGATGCGAAAACCATGGCCTGGAA 90221 29 100.0 32 ............................. TTACCGGGGCGCGGCTTGATACGGCGGGGAAT 90282 29 100.0 32 ............................. GAATCGCCGGGCGCTCCCCTTCAACTCCAAGA 90343 29 100.0 32 ............................. CCGGTACGCAAGGGCAAAGCCCGCGCTTTCGA 90404 29 100.0 32 ............................. AAGGCCAATACGCAGCCCTATACGGCCGCATA 90465 29 100.0 32 ............................. ACAGCAAGACGGCCACCTACCCGAAAAAAACA 90526 29 100.0 32 ............................. AGAACAACGCATTAGGTCTGCTTGCTCGGAGC 90587 29 100.0 32 ............................. CATATGGGCGGCTAGCGACCACCAGGAAAAGC 90648 29 100.0 32 ............................. AGCGGTGAGTGCGATCTTGACTATTTACGCGA 90709 29 100.0 32 ............................. CGCCGCTATGATCTCTTTCTGCGACATTCCAA 90770 29 96.6 32 ............................T ATCAGCCGCAAATGTCGAAAGCGTTCACGGAG 90831 29 100.0 32 ............................. CGGCAAGCGTGAATGGACCTGGAACGGCGTAT 90892 29 100.0 32 ............................. GCGGGTAGATATTGTGCGCCGTGGCGGGGTCG 90953 29 100.0 32 ............................. GTTTAGGGGCTAATGTCTCTGATTTCGTGCAG 91014 29 96.6 32 ............................G CTCTCAAACTCACCTACAAGTTTCGTGGCCTG 91075 29 100.0 32 ............................. CACACCGCCGGGCCGGCGGCATCACGGAATAG 91136 29 100.0 32 ............................. CTCCATAGGTGCGAGAATTTGGGAGCCGGTCT 91197 29 100.0 32 ............................. TACGAAGAGCCAGTATGGGATTAACCCAATTC 91258 29 100.0 32 ............................. GCTTCCGGCTCTAAGCGCTGGTATGCGTGCTC 91319 29 100.0 32 ............................. ATGATCCCAGGAACCGCGCGCCAATTCGATGT 91380 29 100.0 32 ............................. AATTAGTCCATAGGCGCGATTCTGGAGGGGCT 91441 29 100.0 32 ............................. CGATAGTAAATCATGGGATCCATCCCAGCATT 91502 29 100.0 32 ............................. GCTCATTGTTCATGGCAAGGGTGATAAGCTCC 91563 29 100.0 32 ............................. AGCACTGGCTTCAGCAAGCCAGCTAAACGAAG 91624 29 100.0 32 ............................. TTGTCCGCATCTTCCGCCGCTCGTCGGCGGAA 91685 29 100.0 32 ............................. GGCAATGTAGTCGCATCTGCGCGGCGTATTCC 91746 29 100.0 32 ............................. TTACTCTCGCATCGGTTCCTGCTGTCCTTGCT 91807 29 100.0 32 ............................. TGGGCGGTCCCTTCACCTGCCAAGCAAGCCCG 91868 29 100.0 32 ............................. CTCTTCGAAGATTTGACCGGCTGGAGCCTCCT 91929 29 100.0 33 ............................. CTTCCGGATTGCGGAGAGTGCGTACTACGGCCG 91991 29 100.0 32 ............................. ATGAACCCCGCGAGGCGGGGCGGCGGCCAAGC 92052 29 100.0 32 ............................. TATCGCCGCTCGCACGCTTACTGGAAACCTGG 92113 29 100.0 32 ............................. GTACAGGCCTCGATCCTTTCGCCCGGCAAATC 92174 29 100.0 32 ............................. GATAGCGGGGTGGGCACTCTGAATGAAAAAGA 92235 29 100.0 37 ............................. CGGGCGGAAAACGTGGCCACGAATATTCAAGTCAAGC 92301 29 100.0 32 ............................. TGGAAGAAAAACGGGGTCAAAGTGAAAAAGGG 92362 29 100.0 32 ............................. AGTTTCCTTGCTTTCGCGGGACCGCTTACCGA 92423 29 96.6 0 ......................C...... | ========== ====== ====== ====== ============================= ===================================== ================== 65 29 99.8 32 CTCTTCTCCGCACGCGCGGAGGTATTTCC # Left flank : CGACGTCGGCTGCGTAAGGAAATACATCGGCAGAATGTGTTGCCGACTATGCTTGATGTTCTAATGGAGATCTTGGAGCCGCATCTGCCGCATCGCGACGATGACAGGCTTCTTGATGATTCAGGGGAAGTGCCAGGGCATATGCAGTACGGTAAGGATGAAGAATAGTGTTTGCGGTCATTCAGCTTTCCGCAGTGCCTGAGCACGTACATGGATATGTGAGTAGATTTCTTTCCGAAGTGAGCTCGGGGCTTTACGTGGGCGTTATTTCGCGCAATGTTAAGGAGCAGCTCTGGGAACGTCTTAGCGCAGTAACCGGAGAGGGTTCCGCAGTTTTGATCTACAACGATTCTTCCCGCGAGCAAGGATTTGGAATTGAAATGAGCGGGCGGCAAGCTTGCAAGACACTCGACTTCGACGGCTTGACGCTTTTTGCTTCGCGCCCCGGTAGGATTAACGAGAATCGGGCGAGCGGCCGATAAAACCGCAGGTCATTTAGT # Right flank : CAGTGTTGCAACCGTATTAGCCGCATCTCCCGGGGTTTTGTAATCCTCCTTGAAGTTCATGTTGCTCGTTGTGAGAAGGATGTGGCGTTATGAGTTGGCGGGCGTCTGCGTGGGCTTTGGATCAGGTGCGTGGTATTGGTGCGAACTGCAAGCTCGTGCTGCTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCACGCGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 54412-52243 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFUS01000031.1 Actinobaculum suis strain U311 R9-3-1_contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 54411 29 96.6 32 ............................G TATGCCGCTCGCCATTCGGGCCTAGCCAGCAA 54350 29 96.6 32 ............................T TGGTGCGAGCCAAAACAGACACTAGCGAGCTG 54289 29 100.0 32 ............................. CGACCGAGCACGCGAATACTCGGAAGAGTTTG 54228 29 96.6 32 ............................T TAAGCGCCGTAATCTGAGCGGTGTTAAATTCG 54167 29 100.0 32 ............................. ACGCCAACCGGTTCAGCCTACGGTACAGGTGG 54106 29 100.0 32 ............................. ATAGGCCTCATTGACGGTACGGAAAGCAGTAC 54045 29 100.0 32 ............................. TTGACCGCGAACATCTCGGTGTCGTCGAGGAT 53984 29 96.6 32 ............................G GAGTAGCTGTAGGCCTTTTACGGTCATCGGGC 53923 29 100.0 32 ............................. CTGCCAGCGCACCGTTAGCCACAACCCCAAGC 53862 29 96.6 32 ............................G GCACGTACCGATCGGGCTAAGGTGGCAAATTC 53801 29 100.0 32 ............................. CGACGCGGAAGAGTTTTCCCAGCTCCTTACGC 53740 29 96.6 32 ............................G ATTTTCGGCGTACTGTGTGCTATTCGGATCCA 53679 29 96.6 32 ............................G TGGCTTATGGACAGTTTTTATCACTACCGGAA 53618 29 96.6 33 ............................A CATAATCACCCTCGTCGAATGAACCATCACCCT 53556 29 100.0 32 ............................. CATATTCATATCATCGCGGCCAGCCAAGCCGA 53495 29 100.0 32 ............................. GCCATGAGACACGTAGAAGACCGCGCTACTTG 53434 29 100.0 32 ............................. CGACCGACCGCCAACCTTCCGGGTTGCGGAGA 53373 29 100.0 32 ............................. AGCACCGTGTACAGCGCGGTGAGGGTCGCCCC 53312 29 100.0 32 ............................. AAGATCGCGAATGTAGACGTGGACCGCGTGTT 53251 29 100.0 32 ............................. CGGCCCACCAGTTACCTGGCTACTAGGAGATG 53190 29 100.0 32 ............................. CCGCCCCACGTGGCTACCATGTCGCGATGTTG 53129 29 100.0 32 ............................. AGTCTTTTCATAGGCCGCGTATATCGACCTTT 53068 29 100.0 33 ............................. CGAAGATGAGGCAGACCGTCTGATCGGTTTCCT 53006 29 100.0 32 ............................. GGTTTCCTTCGCGCCGCGTTTGAAGACGTCCG 52945 29 96.6 32 ............................G AATATTGCCAGATCGGCGCGAGAAGCCCCCTG 52884 29 100.0 32 ............................. TCTTTCCGATCGCTGGTGAGGTCGTTTATTGC 52823 29 100.0 32 ............................. CATATTCATATCATCGCGGCCAGCCAAGCCGA 52762 29 96.6 33 ............................A TGGTCAGCCCAACCCGTCTCAATCCACTGGATA 52700 29 100.0 32 ............................. TTCTATGCGATCGGTGTGGAAGCCGAAAATTC 52639 29 100.0 32 ............................. GACTGGAGTCCTGCGAGATGGTGCGATCTTGG 52578 29 96.6 32 ............................G AAGGCACAACCTTCGCCGGTCACGGTGGCGCG 52517 29 100.0 32 ............................. GGCATGCGGTCCCATACGGTCGATACGGCGTT 52456 29 96.6 33 ............................G TGGCGGCCGAAGAGTCTGCTCGGCGGGAACGTT 52394 29 96.6 33 ............................G TGGCGGCCGAAGAGTCTGCTCGGCGGGAACGTT 52332 29 100.0 32 ............................. CGAAAAACAAAATGCCTAGGACCCCGGCGAGT 52271 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.8 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCCGTACCCGCAGGTTTGCGGGGTGATCTCACGAAATGGCTGATGGAGATCGCGCCAGGAGTGTTCGTGGGAACTCCCAGCGCGCGGATACGGGAGCAGATCTGGGCACGTACCGTCGCGCTTTGCAAAGACGGCCGGGCAATCATGGTCTGCTCTGCGAATAACGAGCAGGGAATGATATTTCGAACCCATCGGCACGATTGGGACCCTACAGACTTTGATGGTTTGACCTTAATGATTCGGCCAGATGCTGGGCAGAAGCATCCAACCAGTCAGCGAAGAACTGGTTGGTCGACTGCGAGGCATCAGCGCAAAAAGTATCGATAACTGCTGAACTGTTCGGACGTTCGAACCGGTGACAGCTCGCGCATCGTGGACTGTGTGCGATAGTGATGTGCAGATCGGATCGGGAAACGTTCGTTGAGTAACCTCCAGTTAGGCCGAAATAAGTTAGATGTACAATCGAGGAGCTGGCGGTATACGCACTGGTCAGCAAGT # Right flank : CCCCCCGCCGAATCGATAATTGGGGGCGGGTTCTAGGGATTGTTGCAACGCTCGATTCTGAGGAGCGTTATGAATAGGGAAGAACTCGCTGCCAGGCGTGAACGTTATTTCGATCTTGTGGCCTCGGGTATGAATTTCACTGCCGCTGCCCGCGCGGTTGGCGTGTCCAAACGTACTGGTAAGGTCTGGCGGAACGGGCGGACCCGTGCCACCGGGCGTAATGAAGCGCCAAGTGTTGATTGGTACCGTGGCGACATGCCACAACCTGCACCACTACACGCCCGCTATCTAAGCGAGGCTGAGCGCATACAAATCGCTGATCTGCTGCACGCGGACTACTCCATCCGCAAAATCGCGGTCACGCTGGGCCGCGCCCCATCAACAATCAGCCGCGAACTGCGCCGCAACACAGAATTACTGGCCGCCACCTATCGGCCTTACCGGGCCGATCAACTCGCCAAAGCCCGCCAACGCCGTCCCAAACAACCCAAAATCCTAGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //