Array 1 22001-23589 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADDXD010000005.1 Vibrio cholerae strain 4772STDY6940818, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22001 28 100.0 32 ............................ TGAAACACACCTAGACTCACATCCTTGTAAGT 22061 28 100.0 32 ............................ TTGTTCGCCCAGAGGGGCGCGAATTGGTCATT 22121 28 100.0 32 ............................ GCGCGGAAAGCTCAAAGGGGGTGAGGATGCCA 22181 28 100.0 32 ............................ TCGATGCGAGATTTCCCGTTAGTTAGATATGA 22241 28 100.0 32 ............................ CCATCGCCAATGATAACCCCGAAATTCTTATT 22301 28 100.0 32 ............................ TTACTAGCGTTGGATTGTTTCTGCTCTCATTC 22361 28 100.0 32 ............................ CACTAAATATCCGTAAGGTATCGCAATCTGAT 22421 28 100.0 32 ............................ TTTCATCTATTACGCCTCCAGCTGGATGTTTA 22481 28 100.0 32 ............................ ACCGCTAATTAGCGCTGAAACGCCCTTGGTTG 22541 28 100.0 32 ............................ TTACTACCCGCTAAGTCTCGCGCAATCGTTAG 22601 28 100.0 32 ............................ TACCGAATCAAAGGGGGTGAGATTGCGGTTGT 22661 28 100.0 32 ............................ TTTAAAGATGCTTGGTCTACCTTTGGCCGTAA 22721 28 100.0 32 ............................ AGCGAGCTGCACCGCATACCACTCACTAAAAC 22781 28 100.0 32 ............................ CCTCAGTGTAAGTGCATTCAGTACCGGTATAT 22841 28 96.4 33 ...........T................ TCATTGATGAAGCTCAAGATTATTTTCCTCCTC 22902 28 96.4 32 ...........T................ AGACAAGGCCAGTGTTTGCGAGGTTCTGCTCA 22962 28 96.4 32 ...........T................ ACTATGATGATCACAAATAGTGATATGCCGAT 23022 28 96.4 32 ...........T................ TTGCTCAATTTGAATGCGCTGGAATGGCGCGC 23082 28 96.4 32 ...........T................ TAGACCAACGCGTGGCCGTGGCGGTAGAGAAA 23142 28 96.4 32 ...........T................ CTAAGTGCGGAAGCTCTGGCGCGGTGCTGCAC 23202 28 96.4 32 ...........T................ ATCCAAAGTCCCAAATACTACGCTCGACAATC 23262 28 96.4 32 ...........T................ TGCGTGGAACGCCAGCCGCGCAAGACGATGAG 23322 28 92.9 32 ...........T...A............ AGTATGCGTTTTCGAACTGCTTGCGATCAGAT 23382 28 96.4 32 ...........T................ AACCAGAGCAACAGGTACAGGCTGCGCTTGAA 23442 28 96.4 32 ...........T................ TGCTTTGGGTTCCACCCAGTCAGATGGCCGTT 23502 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 23562 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 27 28 97.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATGTAACTTACGTCAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCTGGATATGCAGCAAAAAGCCGCACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGCGGATTTGCAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAATGTTGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATAGTTGCAACTGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //