Array 1 35222-38521 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKBO01000013.1 Tetragenococcus koreensis strain 8C4 sequence013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 35222 32 100.0 34 ................................ AAAAATAATCGCATATAATTTTAAGGCGCTTATG 35288 32 100.0 34 ................................ GCTGAAGTTTGGTGTTCCGAATAATTCTTCTTGC 35354 32 100.0 36 ................................ GGCTGATATTAATTTTTTGTTTACTGATGACGATCT 35422 32 100.0 34 ................................ AATGCGAAGACTTAGGAATGGAACTAATTAACGG 35488 32 100.0 34 ................................ AAGACAGTAGTCGTTATAATCTAGTATCAACGCC 35554 32 100.0 34 ................................ AATCAATTAAAACCTATGATGTCAGATTTAAACA 35620 32 100.0 35 ................................ AAAATTAATGGGACAAAAAGAAGCTGCGGACCAAG 35687 32 100.0 35 ................................ AAACTTAACTTCACACATTACCAAACCTTTACTAG 35754 32 100.0 35 ................................ ATTAGTGGTATGTGGGGCAAAATACAACCGATTTT 35821 32 100.0 38 ................................ GATGGTTACAATGCATCTTTGAATAAAACGAAGAAGAC 35891 32 100.0 34 ................................ ATCCCTTTGGTTACATGGGTGTATATATTTTCCG 35957 32 100.0 35 ................................ AGCTGATATTAATTTTTTGTTTACTGATGATGATC 36024 32 100.0 35 ................................ TAATTTTGCCGCTGCCTCGTTATAACGACTTAGTG 36091 32 100.0 35 ................................ ATGTTATAATTACCTCCATAGAGTGTTTTTATTAA 36158 32 100.0 36 ................................ TCTATTTCGATTTCCATGAAGCTAATTTGTTGCTTA 36226 32 100.0 35 ................................ TTACTACCGTTCATGCCTGATGGGTACGCTACGTC 36293 32 100.0 34 ................................ TGTATCTGATGTAGATGACTTGAAAGAGATCATC 36359 32 100.0 34 ................................ GTTCGAAATCTTTTGCACGTTGGGCGACTTCCAC 36425 32 100.0 35 ................................ ATCGCTGCAGTATCTTCTGCATTGATGACGTGCGT 36492 32 100.0 36 ................................ TCAACTTGGAGATAACATTTTAATCTCTGGAACGTT 36560 32 100.0 34 ................................ TGCCACTTGTTAAAACAAGCCAACGATTCCGCGA 36626 32 100.0 36 ................................ TTAGGTAATGTTCGCGTGGATTTACTGCCAAATCTC 36694 32 100.0 36 ................................ CACTATTGCCCAGCCATCTAAGTCAAATTTTTCTGC 36762 32 100.0 34 ................................ TTCTGCAGTCTCCTCATCAGTTTATTCAGCAACT 36828 32 100.0 34 ................................ GCCATAGTGGTCAAAGAAAATATCTATAATCTCG 36894 32 100.0 35 ................................ GTTATCCAAACGGAAAAATGTTTATGACACCTGAC 36961 32 100.0 35 ................................ TTGGTTTGATGATGCAGGTGGCGGTGACTTTGACG 37028 32 100.0 34 ................................ GATAACGTTTAAAAGATTATCAAAGCTTTTGCCA 37094 32 100.0 34 ................................ CTTGATCCAATCGACAAATGAGCTTTTAGTTTTG 37160 32 100.0 34 ................................ TAAATTTTTTAGCTCTAATCTTTTTGACCAATCA 37226 32 100.0 35 ................................ AATGCCAATTAAATCATTCGTCCACCGCTCTTTGT 37293 32 100.0 34 ................................ CTTAGTAAAAGGAAACAAAGGAGTAATGATTATA 37359 32 100.0 33 ................................ AATTATAAGGATGAAAAAGATCTCTTTAATGAA 37424 32 100.0 34 ................................ TTTGCATCGAAGTCCTTACCTACTGTTTGTAATG 37490 32 100.0 35 ................................ TGCGATATCATATATTTTTAACAATCCCCAAGAAG 37557 32 100.0 35 ................................ ACTCATGTCTACTATTATTCTAAATATGTCTCCTC 37624 32 100.0 35 ................................ AATCATGTTAAGCTCTTGGGTCATTAGTTTGCCCT 37691 32 100.0 35 ................................ ATAATAAAAAAGGAAAGCTACTAACTTTCCCTTAG 37758 32 100.0 35 ................................ ACTGTTTTAACAGGTGTTTGTGATTCTGTCTTAAC 37825 32 100.0 34 ................................ TGCATTTCTAACAGATCTTGAAGCGTTAGTAGGT 37891 32 100.0 34 ................................ CTTGTGGATTATTTTAGGCGTTTGCTTTTTAATC 37957 32 100.0 34 ................................ TACGATCGTCATCTCTAAATCTTTATAGGAATGT 38023 32 100.0 34 ................................ ATTTGCGTTGGGGTAATCAAAAAACTTGATGTTG 38089 32 100.0 35 ................................ TAAGAGCTTTTGTTTCGTCCGCTCAAAATGATCCA 38156 32 100.0 35 ................................ ATTGGCATACCTGCAGCATTAGCAAAACGAGCAAA 38223 32 100.0 35 ................................ AAAAAGATATTCGACCAAGCATGTACGCTAACTGA 38290 32 100.0 34 ................................ AACAGAGATATAGGAGGGCAAAAATGAGAATAGA 38356 32 100.0 35 ................................ TGCCACTGGAAAAAGGTCTTGAATTTTCTCGAAAG 38423 32 100.0 35 ................................ TTTCACGCACAAATCAGGAGGAGTTAAATGCATCC 38490 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 50 32 100.0 35 GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Left flank : TACGCATGAAACTGATAACCTTTTAAAAATCAAAGATAATTACAAAAAAATAATCATCACAGGTAGATATTATGAGGTAGAACAAGTAGAAGGTATACCAATTATTTATATTGTGGATTGGTTATTAGAAGAGTGATACCAAGGCAAATTGAAAGTAAAGAAACTTTTATCTTGCGTTCAGTATGGGCGGACCGTGGTAAGTATTTGCAATGACGGAAAAATTGAAGAAAGTTTGGTTTGGTTATTTCGATTTTATGCTTTATTTATTAGGAAAAAACTGGCAGAATAGAATTAGATAAATAGGAAATAATAATAATTATGTCTCTGAAGGAAATGATTTGTTATTATAATATGTAATTTGGCGCGAACCGAGGTCACACATAAAATACTAAGTTGGTTCGCGCAAAATTGGTACTATTTTATGAAAAATTACTCGCTTTTTCCGATTTATTAGGTGATTTTCTAAAATGAAAGTAGTACAAAGCCGCGTATTTTCCGCG # Right flank : TAAACTAGATAATCCTAGTGACAGTAGGTCCAATATGGTCACTCTTTTCATAAAAGTAAATGTAAAATTTATTGAGGTTCCCTAACTAATGAATAAAAAAACCGTACTTTTTGTAACCAGATTGATGAGCGCTAACGACAAAGGTAGTTTCCTATGGATTCTATCAGAGTCTGGTGGGAAGAACCTTTTTATATTATAACATTACCAGATAATTCAAAATCATAGAATAAAGACAGACAGTAAAACGCCAATTGGTTCTCTGTTTAGTAGGGTGAGGTTTATGTTCCTGTTTTTTCGGATAAAGTTTTCCGATTCCTTTATCCATGATTGGATTCTCGTAGAAAGAATTCCTGATCTATTATCCATCTTTTTATTTTCGGATAAGGGAATGCCAAACTTTTATTCGTTATCAGCTATTTAAGAGCGTTTAACCGCTATTTTTCCTATTTTCGGATAAAGTTTTTCGATTCCTTTATCCATGATTGGATTCTCGTAGAAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 47932-50559 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKBO01000013.1 Tetragenococcus koreensis strain 8C4 sequence013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 47932 32 100.0 34 ................................ TTTCGCACCGTCGGCTGCCTCTTGCACTTCTGCT 47998 32 100.0 35 ................................ AATTTGCCCACGATTTAAGTAGTTTAGGGCAAAGA 48065 32 100.0 34 ................................ TTCGAAATATAAAGACCCTGCAAATTATGCTTTT 48131 32 100.0 33 ................................ TTTATTATCTGTTCCTCTGATTCCGTAGTAGTC 48196 32 100.0 34 ................................ TGATCAAGAAACATCTATTGAGCAGAATGCTAGA 48262 32 100.0 33 ................................ ACGCTGAAGGTAGTCAATCACCTAATAGTAACC 48327 32 100.0 34 ................................ TTCTGAACCCCTGTCATCAATCTCGTAGACCCGA 48393 32 100.0 34 ................................ ACCATTGAGTTTAAAAATACTAAAGTATATAAAA 48459 32 100.0 34 ................................ AGTGGAAAAAGCGCAACTACAAGCAGAAAATATT 48525 32 100.0 34 ................................ CGCTTTACTATCGCCCTCTGTTTTGATTTCGTCC 48591 32 100.0 36 ................................ TCCATACTACTCCTCAAAGTTTGATGGGTTGGTATG 48659 32 100.0 35 ................................ AACCCAACTACTGTATCTGATGTCGACGATCTAAA 48726 32 100.0 35 ................................ TTTCTTCACTATCTAAATCCCCAGGAATACTGACA 48793 32 100.0 36 ................................ TCCACTTTCTCGCAAGTCCTCGTACACATGCACTTC 48861 32 100.0 34 ................................ AGAGTCATTAAAACCATTCACGCAAAATATCTTT 48927 32 100.0 35 ................................ ATTTTGTTTAAACAACCAAAAATAAGATTAGGAAA 48994 32 100.0 36 ................................ CGTGAAGAAATAGACGAAGCCAAACAGGCTGGATAT 49062 32 100.0 34 ................................ ATCAAAGAATTATTTTATTTTATTTCGAAAGAAG 49128 32 100.0 36 ................................ GGTATCCAAAGACCAAGAAATTGAAAAAGCATACGG 49196 32 100.0 35 ................................ AAACAGAGACATTGCAACTGTTGATAGTAACGGAA 49263 32 100.0 36 ................................ CCTAAATTGGGAACGGCGTTATCTGTTTTAACAGGA 49331 32 100.0 35 ................................ GTTGGGAAGAATCAAAAGTCCGCATTACAGACTAC 49398 32 100.0 35 ................................ AAAACTGTCGGCGGTATGATACTAGACGTATTTAA 49465 32 100.0 34 ................................ AAGTTCCGGGTCAATATCAATCAGACGAGACGAG 49531 32 100.0 35 ................................ CGCTATTGCCTGTGTAGCGTACCCAAGTATAGCCA 49598 32 100.0 35 ................................ CACTTGGATGATGCGCCCATTTCCCACCACGTGGG 49665 32 100.0 33 ................................ AAACATGGAGATAAATCTGCGTCTGCATATAAA 49730 32 100.0 34 ................................ TATCATTTATAAAAGATAATATTTTCCACATCCC 49796 32 100.0 35 ................................ GGATAATCAAAAAATTTAATATTATTTTTATCCAC 49863 32 100.0 36 ................................ CATTTCTTTTCTTTTTTTACGTAACTAACGCCTTTG 49931 32 100.0 34 ................................ AAAGGCATTTTGTAGCTACTATAAAGGGCATCTA 49997 32 100.0 34 ................................ GGTTTATAAATATAGTTCCAATCCGGATCTTCCA 50063 32 100.0 34 ................................ GATATGTTCAAAGGCTGTCCGTATCTCTGGATCG 50129 32 100.0 35 ................................ TTTGCGTTATGTGCATTAACAGTTGCAATTAACGC 50196 32 100.0 35 ................................ CCGACGAAAGGGGATCAATAATGACACGAGCAGAA 50263 32 100.0 35 ................................ TACTTACCAAGACTTAAGAGCTAAGAACCTATATG 50330 32 100.0 34 ................................ GCCTTTAGAAATTAACCCTGCTCGCGGTATATCT 50396 32 100.0 34 ................................ ATTCCATTTGAAGATTAACGTTCCTGTAGGACTT 50462 32 100.0 34 ................................ ACTCGTAAACCTGCATTGCGCAAGCCAATTTTAG 50528 32 96.9 0 .....................A.......... | ========== ====== ====== ====== ================================ ==================================== ================== 40 32 99.9 35 GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Left flank : CTATTCGAGACGATTTACCAAGTTATCCACCTTTTATGGCGTAAGGAGAGCAAGCCCATGATGATTTTAGTCACTTATGATGTAAATACAGAGACGAAACAAGGAAGAAAACGTCTGAGACATGTTGCAAACTTGTGTGTTGATTATGGACAACGAGTGCAAAATTCTGTTTTTGAATGTTCGGTTGTTCCAGCAGAATTTGTTGAATTAAAAGGAAAATTAGCTGATATTATTAATCCGGAGCTTGACAGTATTCGGTTTTATTTGTTAGGAAAGAATTGGCAAAATAGAGTAGAACAAATGGGAAATAATGATAGCTATGATCCGGATAAAGATGTTTTGCTATTATAATATATAGTTTTGCGCGAGCCGAGGTCGCACATAAAATACTAAGTTGGTTCGCGCAAAATTGGTACTATTTTATGAAAATTACTCATTTTTTCCGATTTATTAGGTGATTTTCTAAACCGAAAGTAGTACAAAGCCGTGTATTTTCCGCG # Right flank : TAACATATTGTATGATAATCAAATATGTGTTGTTTTAGACATTAGCGTTTAATTATCGAACTAATCAGTTTTTCTTAAAAATAAAACATAAGTGTAAAATTTATTAAGGTTCACTAACGGATGGACAAAAAACGCACTTTTGCAGCTAGTTTGACAGACACTAATGCCAGAGATAGTTATTTATGGGGTCCAACAAGCTTTAGCGGAAAGAAAAAAATTATGACTGAGGAGAAAATGAACGAAATGCTCTCTATTCTTGACTTATCAGGGATTGAATTGGGAATTTATTACCTACCTTTTCGAACATAGGAAACCAACTGGCAGCACATCAAACGAAGTTTTACTTCTCTTGTTATGATTTTGATCTATCTGGCACAAATGCGATAAAAATAAATCTCCTCTTTTGCGTCTATCGAACATTCCTAGTATAATAACTATGTTTTTGACAGAAATATTCAGAGGTTTAAACAGAACGTACGAGATAGGAGAATATACATAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //