Array 1 194026-195640 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIDI01000004.1 Salmonella enterica subsp. enterica serovar 4,5,12:i strain 1892 1892_4_length_397518_cov_41.0006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 194026 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 194087 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 194148 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 194209 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 194270 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 194331 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 194392 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 194453 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 194514 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 194575 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 194636 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 194697 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 194758 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 194819 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 194880 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 194941 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 195002 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 195063 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 195125 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 195186 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 195247 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 195308 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 195369 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 195430 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 195491 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 195552 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 195613 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 211773-213249 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIDI01000004.1 Salmonella enterica subsp. enterica serovar 4,5,12:i strain 1892 1892_4_length_397518_cov_41.0006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 211773 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 211834 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 211896 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 211957 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 212018 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 212079 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 212140 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 212201 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 212262 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 212323 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 212384 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 212445 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 212506 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 212568 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 212671 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 212732 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 212793 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 212854 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 212915 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 212976 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 213037 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 213098 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 213159 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 213220 29 96.6 0 A............................ | A [213246] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //