Array 1 11419-10539 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045548.1 Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11418 28 75.9 32 .C...GG.........A....C-..G... CAGGTCTAGTCAACTTTCCAGCAGCGGAAGTG 11358 29 100.0 32 ............................. ATGGGGCATTTACCGGCGTTGAGGCGGTCGAC 11297 29 96.6 32 ........T.................... ACCCAGGACGGGAAAGCGCCGGCACTCGAACT 11236 28 93.1 32 .....................-.....G. CCCATCCGGATCCAGGACATCGCCAAGGCCGC 11176 29 100.0 32 ............................. GCGGTGTCGAACTCGAGGAGCCCGGCGAACAC 11115 29 100.0 32 ............................. CACTACACCTCGGGCCCCGGGCCCCGCTGGAC 11054 29 96.6 32 .......T..................... ACGATCGACCGCGTCTCACGGTTCGAGCGAGG 10993 29 100.0 32 ............................. CCCGGAGTGGGGTGAGCCACCACAGGGATGCC 10932 29 96.6 32 ............................A CTCCCCGATCTCCCGTGGGGCACGGTCCGCAA 10871 29 100.0 32 ............................. CTGAAGCACGGGTCGCTCTGCTGCGCCGCATG 10810 29 100.0 32 ............................. ACGCTCGCCGATCAGGGGCTAGCTGTGGCCGG 10749 29 96.6 32 ............................A CAACCTGTGACCTCCCTCACACTCCTTACTGG 10688 29 100.0 31 ............................. AAGTACGTCCTGATCCCGGCGGGTTCGCGGC 10628 29 100.0 32 ............................. ACCGCCAACGAGCGGGCCACGCTCAGCAAGGC 10567 29 89.7 0 ........T.....T.T............ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 96.3 32 GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Left flank : ACAACTTCAACACACTCCTGGTCCAAGCCGCCACCCTCGACCCGACACGCCTGCCCAACGACTACGGCCACACCGACGTCAAAGACCTCACCCCAGTGTTCAACGCCCTCCAAAAGGGCCTCGCCGTCCGCTACCGCATCGTCGTCAACCCCGTCAAAACCGAACGCCTGCCACTGGAGAACAAGGGCCAGCGCGGCAAACGCATCGCACTCACCGGACCGGACGCCGACCAGTGGTGGGCACACCGCGCCCACGAAGCCGGCCTGCACCTGACCACAGCACTGCCCACCCCGGTCGCAGCCGTGCATGGCCGCGGCAACAACGCCAGCGCCGCGCGACATCACCTCGTGCGCTACGACGGCACCGCCACCGTCACCGACCCTGATGCCCTCGCCGAGGCTGTACTGGTCGGCATCGGACGGGCCAAGTCTTACGGCGCCGGCCTGCTCAGCCTTGCCCGCGCAGCCGCATGAACCCACCTTCCGACCGCCGCGCCGCAA # Right flank : CTGGACCGGCTTTCGGCGTTTTCCTCGGCTCTTCCGTTGGGGAAGCCAGATTGTTGGCCTCCTCGAATCGGTCGTTGTCGGCGGAGCGCTCGACGATGCGGAACGTTGGCGTTGCCAGACGGCGCGCCGGGCTTTCATCGTGACCGCTCAGGCGGTCCTTCACGGTGCCCCGTGAGTCGTTTCGGCTGCCCTGGCGGGTGTCGTGCTCGGTGTGGATGAACGCCGTCTCGACGGGCTGCCCGTCGCCGTAGATGAGGAGGGCAGCTCCGAAAGCAGCGGCACGCTGGACGGCACGGGAGCAGCCCGACCAGCGGCTGACGCAGCCAGAGCTCGGTCCGAACAGGAAGGCCGGCCGCCCGGCGAGCGTCGCGCCGTCGGACGGAGTCGGATACCTCCACGGGCGAGGGCTCCACAGACGAACAGGGCAACGGTGTGCAGCCTCATGGTCCGGTTGTCAGGTTTTATGGCGGCTGATCCGGCTCCTGCCGCATTGTCAGTGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 20609-25906 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045548.1 Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================== ================== 20609 28 71.4 31 ..........G........T..TCATGT CTCGGCGCCGCCTCCATTCCGGCTCTTGTCG CGG [20625] 20671 28 75.0 88 ...................T..TCCGGT GCCGGTGGGCAGGGCCTCAGCCATCAGCCGGTCCGCCGATGCGGGGGTATTCCGAACGTCTGCAGCGCGCGGAAGTGCTGGTGCGCGC GA [20687] 20789 28 75.0 31 ...................T..TCCGGC CCTGGCCGCGTGCCGTGCCCTGTACGAGGCG GG [20805] 20850 28 71.4 31 .......T...........T..TCCGGA CGCCCTGATCGTCGTCCTTGCCGGCCTCGTG GG [20866] 20911 28 75.0 31 ...................T.CTCC.GC GCCTCGGGCTTGGCCCTCTTCGCGGCGGGCC 20970 28 89.3 32 .....T....................GC CGGGCCAGCAGCTCCGCGGCACCGCCCGCACG 21030 27 92.9 33 .............T..-........... TTCGCCGCCTCCGTCAGTCCGCCTCCGCCCCGG T [21035] 21091 27 92.9 34 ................-.......C... ATCAGACAGGATGGTGCCCGTGACCGACGCCGCC 21152 27 75.0 32 ..-..TT..........AA.......AA CGAGGAGGATCTCCCCGCGGTACCGGTCGCTG C [21175] 21212 28 89.3 33 ..G..T............A......... CATTGAATGCGGTTGTAGGTCGCCCCGCCGGAG 21273 28 100.0 33 ............................ CCGCAGCCCGCATCCGTCGAGATGCTCGCATGG 21334 28 92.9 33 ..T...T..................... GAGGGCCGCCAGGGCCCGACGACTGCGGCGCAG A [21351] 21396 28 92.9 33 .............T.........C.... GCCCGCATCCGAGGCGTCCTGTGCGACATCACG 21457 27 96.4 33 ....-....................... TACTCAACGGTCTCGTACGCGCCCAGGCGCGCG 21517 28 100.0 33 ............................ TCGCGCAACACCTCGACGATTCAGCACCGTTCG 21578 28 96.4 33 ...........................T CCGCCGGTCATGTCGGAGAGGTTGCTGGTGTCG 21639 28 96.4 33 ....T....................... TGAGGCGACGACCACGACGACGCCGACGTCCGG 21700 28 96.4 33 C........................... AACCAGAGCACCGCCGCCCGCCGTGCCCGGGCG 21761 28 96.4 33 C........................... TCCCCAACGAACCACTGACCGAAGTTGACGAAG 21822 28 92.9 32 .................T.....C.... GCGGGCGAGGTGCTGGCTCCACCGGCGTCGCA 21882 27 89.3 33 ........A.......-........A.. TTGCGCGGCACCATGTAGTCGTCGGGCCCATAG 21942 27 78.6 33 GT.....A........-......C...C ATCATGACCATCTGGACGAAGCCGATCAGCAGA 22002 28 92.9 33 C...T....................... TGGCCCGAGTGGTGGGCGTCCTTCAAGGACTGG 22063 28 89.3 34 .....G..A.........A......... CTGGACTCCCTGATCGCGCGCCCCATTCCATCCG 22125 28 89.3 33 ..T...........C........C.... GCCGCACCCCCACCCGCACCGCCAGGGCCCCGG 22186 27 89.3 30 ..T.......A.....-........... GCGCGCGAGATGATGGTGGGTGCTCTCTCC 22243 27 75.0 33 GGG...T.CT......-........... GTGCTCGCGCCCGGCGGGACGGAGGTGACCGGG 22303 28 96.4 32 .......................C.... GTCTATATCGGCTCGTCGTTCTGGTTCCCTAG 22363 28 89.3 33 ..T............T.......C.... TCGTGGCAGTAGTCCTCCACGTAGACGCCGGTG 22424 28 96.4 33 ..T......................... GTCGTCGACCCGCAGGGCCTGGATCAGGTTCAG 22485 28 96.4 33 ....................A....... CTCTGGCGTGATGATTGGACCGGGAACACCCGG 22546 28 100.0 33 ............................ TCGAGCGCACGTGCACGCTCCTCGCGGACCACG 22607 28 100.0 33 ............................ TCGGGCGGCCCTTCGGCGCGTTCATGGGGTGGG 22668 28 96.4 33 ..................A......... GACAACCTCAGCCGCCCCGTCCCGCTCGAGGAG 22729 27 85.7 33 .......T.......-.......C...C ATCATCGACGCGATGCGAACCTGGTTCCAGACG 22789 27 75.0 92 ..G.............-A.T...C..GA TCAGACAGGATGGTGCCCCGTGACCGACGCTGCCCCTCTTCGCCGACGCGAATGCTTCGACGAGAAGGAGCTCCCCTCGGTACCGGTCGCCG C [22812] 22909 28 92.9 33 ..G..T...................... ATCCAGTCTTTGAGCTCCGCCCTGGTGGTGAGG 22970 27 92.9 32 ........A......-............ CGGCGCTGGAGGCGGAGAGGTCGACATTGCCG 23029 27 85.7 94 .........-.....T.....G.G.... GTCGAGGGCTGCACCATGGTGAAGTAGCGGTCGCCCTCCCCGCCAACGCGAGGGTGCCCCACCGCAGTGCCGACCGTTCGCGGCGCGGTAGGTG T [23048] 23151 28 89.3 33 .......T.......T......C..... GTCTGCTGGGTGGCCGGCAAGCGGTTTGCCTCG 23212 28 100.0 33 ............................ TCCGCCTCGCCGGTCGCGCGGGACCCGTTGGAG 23273 28 96.4 33 ........A................... TGCGGGCCGCCCGAGGCCAGCCGGTCGGTGGAG 23334 28 100.0 33 ............................ GTGAGGTCGCCCCACTGGATCCGGCCGAGTGCG 23395 28 92.9 33 ...............T...A........ TTCTTGGTCCGGTCGTAGGGCACGTCGTTGTTG 23456 28 89.3 33 .T...T............A......... ACCTTCGTTCGCCCGGAGGTCTGGGCGAACGAG 23517 28 100.0 33 ............................ CTGGTCGTCGTCATCCTCGAGGCCCTGATGCCG 23578 28 96.4 33 .......................C.... TTCATCGTCGTGGACGCGAACACGGTGTCGGTG 23639 28 100.0 33 ............................ TGGTCGGTGTGAAAGTGGACGTGCGTGGGCACG 23700 27 96.4 33 ....-....................... AACCCGCCGTTGAACTCGGTGTGGATGCCGGCG 23760 27 89.3 33 ......-.TT.................. GGGAGGCACTTGGCGCGGGCGCCGTCGAACCGG G [23769] 23821 28 89.3 33 ......G.T.......A........... CGACGCTGGAGGTCGGAGAGGTCGACGTTGCCG 23882 28 89.3 93 ...............T.....G.G.... GCCGAGGGCTGCACCATGGTGGAGTAGCGGTCGCCCTCCCCGCCAACGCGGGGATCCCCACCGCAGTGCCGACCGTTCGCGGCGCGGTAGGTG T [23901] 24004 28 89.3 33 ......TT.......T............ ACGGACGACACGATCAAGGAGGTGCGCGACTCG C [24008] 24066 28 96.4 33 ......T..................... ATCAGCCCCGAGCTGCAAGCGGCCGTGCTCCGG 24127 28 85.7 33 .G..........G...A......A.... ATGTCGGTGACGGGCCAGTCCCAGACCGGGGCG 24188 28 89.3 3 ...................C...C..A. TCA A,A,AT [24204,24206,24208] Deletion [24219] 24223 28 96.4 33 .T.......................... CTCGGCGACGCGTACGAGTCCGGAGCGCTCCAG 24284 28 92.9 91 .............T.........C.... ATGTGGCCGGCGTCCTTGGGGCCGGTGTCCGGGTTCTCCCGCCGACGGGAGGGCTCCGATCATCGACGCAATGCCAACACGGTTCCAGACG 24403 27 67.9 33 .AG....A..T.....-AAT...C.... CCCAGACAGGATGGTGCCCGTGACTGACGCTGC 24463 28 85.7 34 C....T............A....C.... TTGTGAACACCGCGCTTGTCCGCAACCCCGACGG 24525 28 96.4 30 .......................C.... CCGTTCGCCATAGGCTCGCCGAGGACCGGC C [24534] 24584 28 82.1 33 .GA...T.C...C............... ATGGACACGATCGGCCTGGACACGATGTATGGG 24645 28 92.9 31 ..A....................C.... CAGACGGTGGTGAGCGTCGACTGCCTGTACG 24704 28 82.1 33 GGTC.T...................... CCGCCGCGGGGTACGAGGTGGGCGGGCGCGCCG 24765 28 100.0 33 ............................ GAGATCTCCGCCCAAGCGTCCGTTGACTTCGAG 24826 28 92.9 33 C............T.............. CCGACTCCCATCCCGGGAATGGACGGCCCCGTG 24887 28 100.0 33 ............................ CTGGTGCCGATCCTCGGCTCAAGGCCGACGATG 24948 28 92.9 33 ..T.....A................... TAGGCGAGGGTGGTGAGGGAGCCGATTCCGGCG 25009 28 89.3 71 .T.....G...............C.... ATGCGGAAGCCCGTTGCCCCGGACTTCGAGTAGTGCCGGGCGGGCACTACGGCCACTGCCACATCCCGGGG 25108 28 100.0 34 ............................ CCCCGATGATCGGTGACCTGGCCGACCCGCCCGG 25170 28 96.4 33 ...................A........ ATTTTGACGAAACCGTTCTGGACCTGGTCCACG 25231 28 96.4 33 .......................C.... ACCTGCTCGTCGCCGTCTTTGGGGCTGTACTTG 25292 28 89.3 33 ..T........A...T............ TGGTTCGGTGAGGCGAAGGACTGGGCCGTCCGG 25353 28 96.4 33 ....................A....... GCTACGGGTCCGAGCCGCCGCGCCGGCGCCTGG 25414 28 100.0 33 ............................ ACCGCCCGCACGTACGCGGTCGACCTGATCGAG 25475 27 92.9 28 ..T.............-........... TCGCTGTAGTTCTCGGTGTCGGCGTCCG 25530 28 92.9 33 ......T.C................... CTGGCGGACCAGGCCGCGACAGTGGAGGCTCGG AG [25533] 25593 23 78.6 18 .....................C.----- AGGATGAGTCACTCCGGG Deletion [25611] 25635 28 92.9 33 ..T.T....................... AAGGGCGCCGGGACGTGGTACCTCGAAACGACA 25696 28 92.9 33 ...............T.......C.... CCCTGTTCGATAGTGGTTCCGTGGGCGGCCGCG 25757 28 71.4 33 .G.AGGTGT......T............ AAGCGAGTCGATTTGCCCGACCACGTGAGAGCG 25818 28 100.0 33 ............................ GTGTACGGGGCGCTCGAAGAACATCAGACCGCG 25879 28 92.9 0 ...................A...C.... | ========== ====== ====== ====== ============================ ============================================================================================== ================== 83 28 90.8 36 TCCTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : AGGTACTCCTTGAGACCTCACGCGTAGTGATCAGCGCGGTAATCCGCGCCCTGATCACCGAACTCGTCAGCTGGCTCATCTGAGCCAACGGTGACGGACCCCAAAGGGGTCCGTCACCCCTCATTTGCACACAACCCCCACTGGCTGAACACGTCTCCTCGCTACTGGATACACCACAGGACGAGATGCCCGGCTACCAGCGGATACCGCCGACACCGCGAACAGAGAAACCCCCGCCACCTCAAGACCCGCCCGGCCCTCCCCGCCGACGCGAGGGCGTTCCGGGGGAATGACATTCCGGTCGAGGTCGGCGTCGGTCTTCCCCGCCGACGCGGGGGTCTTCCGATGTGGCCGGCGTCCTCGGGGCCGGCGTCGGGGCCCTCCCCGCCGATGGGGGGGTGCTCCGATCACCGACGCGATGCGGACGCGGTTCCAGACGCCGTCCCCGCCGACGCGAGGGTGCTCCGGCCGCCACCGTGTTCCGCAACATCAAGGTGGCG # Right flank : GGCGCCCAGAGCCGTACAGGGACGAGATGGTCTCGCGTTGCAGCGTGAGACCACCGAGAGCCGGCCACCGCACAGCGGTGCCGGCTCTTTCGGCTTACCCGATCAGGCAGGGCCGGAGTCGGTGGCAACCGTGCCTCTCGGGGCTCTCGGTACGGCGTGCCGGCTGGCACGCCGAGCGTGACGGCCTCGCGCCGGTTGAGACGCTCGGTGCGGGCGGAGCCCGTCGCCACGGTCCGCGCGGCGGGCTCTGCGGCTTCCGCCTCACCCTGCACCACAAGGTCCCGCCTCTGGTGCAGGGTGAGGCCGCTACGGTCTGGGCCCGAATCCGTGACACGAGCCACCCGGGTGCACCTGGTCACGGCGGCCACGGTGGGCCGGTTCTGCCACGATCCCGTAGTCACCCGGGCAAGGTCTTCTCGCCAACTGGCCGGGCTCGGCCAGGGGACTGCGCGGCCGACCGGCACCGGACTGCTGCCACCAGGCCGCCACGGTCACAGACT # Questionable array : NO Score: 4.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11419-10539 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045547.1 Streptomyces sp. SYP-A7193 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11418 28 75.9 32 .C...GG.........A....C-..G... CAGGTCTAGTCAACTTTCCAGCAGCGGAAGTG 11358 29 100.0 32 ............................. ATGGGGCATTTACCGGCGTTGAGGCGGTCGAC 11297 29 96.6 32 ........T.................... ACCCAGGACGGGAAAGCGCCGGCACTCGAACT 11236 28 93.1 32 .....................-.....G. CCCATCCGGATCCAGGACATCGCCAAGGCCGC 11176 29 100.0 32 ............................. GCGGTGTCGAACTCGAGGAGCCCGGCGAACAC 11115 29 100.0 32 ............................. CACTACACCTCGGGCCCCGGGCCCCGCTGGAC 11054 29 96.6 32 .......T..................... ACGATCGACCGCGTCTCACGGTTCGAGCGAGG 10993 29 100.0 32 ............................. CCCGGAGTGGGGTGAGCCACCACAGGGATGCC 10932 29 96.6 32 ............................A CTCCCCGATCTCCCGTGGGGCACGGTCCGCAA 10871 29 100.0 32 ............................. CTGAAGCACGGGTCGCTCTGCTGCGCCGCATG 10810 29 100.0 32 ............................. ACGCTCGCCGATCAGGGGCTAGCTGTGGCCGG 10749 29 96.6 32 ............................A CAACCTGTGACCTCCCTCACACTCCTTACTGG 10688 29 100.0 31 ............................. AAGTACGTCCTGATCCCGGCGGGTTCGCGGC 10628 29 100.0 32 ............................. ACCGCCAACGAGCGGGCCACGCTCAGCAAGGC 10567 29 89.7 0 ........T.....T.T............ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 96.3 32 GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Left flank : ACAACTTCAACACACTCCTGGTCCAAGCCGCCACCCTCGACCCGACACGCCTGCCCAACGACTACGGCCACACCGACGTCAAAGACCTCACCCCAGTGTTCAACGCCCTCCAAAAGGGCCTCGCCGTCCGCTACCGCATCGTCGTCAACCCCGTCAAAACCGAACGCCTGCCACTGGAGAACAAGGGCCAGCGCGGCAAACGCATCGCACTCACCGGACCGGACGCCGACCAGTGGTGGGCACACCGCGCCCACGAAGCCGGCCTGCACCTGACCACAGCACTGCCCACCCCGGTCGCAGCCGTGCATGGCCGCGGCAACAACGCCAGCGCCGCGCGACATCACCTCGTGCGCTACGACGGCACCGCCACCGTCACCGACCCTGATGCCCTCGCCGAGGCTGTACTGGTCGGCATCGGACGGGCCAAGTCTTACGGCGCCGGCCTGCTCAGCCTTGCCCGCGCAGCCGCATGAACCCACCTTCCGACCGCCGCGCCGCAA # Right flank : CTGGACCGGCTTTCGGCGTTTTCCTCGGCTCTTCCGTTGGGGAAGCCAGATTGTTGGCCTCCTCGAATCGGTCGTTGTCGGCGGAGCGCTCGACGATGCGGAACGTTGGCGTTGCCAGACGGCGCGCCGGGCTTTCATCGTGACCGCTCAGGCGGTCCTTCACGGTGCCCCGTGAGTCGTTTCGGCTGCCCTGGCGGGTGTCGTGCTCGGTGTGGATGAACGCCGTCTCGACGGGCTGCCCGTCGCCGTAGATGAGGAGGGCAGCTCCGAAAGCAGCGGCACGCTGGACGGCACGGGAGCAGCCCGACCAGCGGCTGACGCAGCCAGAGCTCGGTCCGAACAGGAAGGCCGGCCGCCCGGCGAGCGTCGCGCCGTCGGACGGAGTCGGATACCTCCACGGGCGAGGGCTCCACAGACGAACAGGGCAACGGTGTGCAGCCTCATGGTCCGGTTGTCAGGTTTTATGGCGGCTGATCCGGCTCCTGCCGCATTGTCAGTGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 20365-25907 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045547.1 Streptomyces sp. SYP-A7193 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 20365 28 89.3 33 C................A...C...... GGGGAATGACATTCCGGTCGAGGTCGGCGTCGG 20426 28 92.9 33 ..T...................C..... ATGTGGCCGGCGTCCTCGGGGCCGGCGTCGGGG 20487 28 85.7 33 C............T.G.......C.... ATCACCGACGCGATGCGGACGCGGTTCCAGACG 20548 28 85.7 33 C.G..............A.....C.... GCCGCCACCGTGTTCCGCAACATCAAGGTGGCG 20609 28 89.3 33 ..........G...............AT GTCTCGGCGCCGCCTCCATTCCGGCTCTTGTCG C [20623] 20671 28 96.4 28 .................A.......... GTGCCGGTGGGCAGGGCCTCAGCCATCA 20727 28 78.6 34 G..GGT.......T........A..... AACGTCTGCAGCGCGCGGAAGTGCTGGTGCGCGC 20789 28 100.0 33 ............................ GCCCTGGCCGCGTGCCGTGCCCTGTACGAGGCG 20850 28 96.4 33 .......T.................... GACGCCCTGATCGTCGTCCTTGCCGGCCTCGTG 20911 27 85.7 31 ...................T.C-.C... CGCCTCGGGCTTGGCCCTCTTCGCGGCGGGC 20970 28 89.3 32 .....T....................GC CGGGCCAGCAGCTCCGCGGCACCGCCCGCACG 21030 27 92.9 33 .............T......-....... TTCGCCGCCTCCGTCAGTCCGCCTCCGCCCCGG T [21035] 21091 27 92.9 33 ................-.......C... ATCAGACAGGATGGTGCCCGTGACCGACGCCGC 21151 28 71.4 32 CT...TT..........AA.......AA CGAGGAGGATCTCCCCGCGGTACCGGTCGCTG C [21174] 21212 28 89.3 33 ..G..T............A......... CATTGAATGCGGTTGTAGGTCGCCCCGCCGGAG 21273 28 100.0 33 ............................ CCGCAGCCCGCATCCGTCGAGATGCTCGCATGG 21334 28 92.9 33 ..T...T..................... GAGGGCCGCCAGGGCCCGACGACTGCGGCGCAG A [21351] 21396 28 92.9 32 .............T.........C.... GCCCGCATCCGAGGCGTCCTGTGCGACATCAC 21456 28 85.7 33 GT.CT....................... TACTCAACGGTCTCGTACGCGCCCAGGCGCGCG 21517 28 100.0 33 ............................ TCGCGCAACACCTCGACGATTCAGCACCGTTCG 21578 28 96.4 33 ...........................T CCGCCGGTCATGTCGGAGAGGTTGCTGGTGTCG 21639 28 96.4 33 ....T....................... TGAGGCGACGACCACGACGACGCCGACGTCCGG 21700 28 96.4 33 C........................... AACCAGAGCACCGCCGCCCGCCGTGCCCGGGCG 21761 28 96.4 33 C........................... TCCCCAACGAACCACTGACCGAAGTTGACGAAG 21822 28 92.9 32 .................T.....C.... GCGGGCGAGGTGCTGGCTCCACCGGCGTCGCA 21882 27 89.3 33 ........A.......-........A.. TTGCGCGGCACCATGTAGTCGTCGGGCCCATAG 21942 27 78.6 33 GT.....A........-......C...C ATCATGACCATCTGGACGAAGCCGATCAGCAGA 22002 28 92.9 33 C...T....................... TGGCCCGAGTGGTGGGCGTCCTTCAAGGACTGG 22063 28 89.3 33 .....G..A.........A......... CTGGACTCCCTGATCGCGCGCCCATTCCATCCG 22124 28 89.3 33 ..T...........C........C.... GCCGCACCCCCACCCGCACCGCCAGGGCCCCGG 22185 27 89.3 27 ..T.......A.....-........... GCGCGCGAGATGATGGTGGGTGCTCTC 22239 27 85.7 33 ......T.CT..........-....... GTGCTCGCGCCCGGCGGGACGGAGGTGACCGGG GGG [22242] 22302 28 96.4 33 .......................C.... GTCTATATCGGCTCGTCGTTCTGGTTCCCCTAG 22363 28 89.3 33 ..T............T.......C.... TCGTGGCAGTAGTCCTCCACGTAGACGCCGGTG 22424 28 96.4 33 ..T......................... GTCGTCGACCCGCAGGGCCTGGATCAGGTTCAG 22485 28 96.4 33 ....................A....... CTCTGGCGTGATGATTGGACCGGGAACACCCGG 22546 28 100.0 33 ............................ TCGAGCGCACGTGCACGCTCCTCGCGGACCACG 22607 28 100.0 33 ............................ TCGGGCGGCCCTTCGGCGCGTTCATGGGGTGGG 22668 28 96.4 33 ..................A......... GACAACCTCAGCCGCCCCGTCCCGCTCGAGGAG 22729 27 85.7 33 .......T.......-.......C...C ATCATCGACGCGATGCGAACCTGGTTCCAGACG 22789 27 75.0 92 ..G.............-A.T...C..GA TCAGACAGGATGGTGCCCCGTGACCGACGCTGCCCCTCTTCGCCGACGCGAATGCTTCGACGAGAAGGAGCTCCCCTCGGTACCGGTCGCCG C [22812] 22909 28 92.9 33 ..G..T...................... ATCCAGTCTTTGAGCTCCGCCCTGGTGGTGAGG 22970 27 92.9 32 ........A......-............ CGGCGCTGGAGGCGGAGAGGTCGACATTGCCG 23029 27 85.7 32 ..........-....T.....G.G.... GTCGAGGGCTGCACCATGGTGAAGTAGCGGTC T [23048] 23090 28 78.6 33 C..........A.....A.....CC..A CCGCAGTGCCGACCGTTCGCGGCGCGGTAGGTG 23151 28 89.3 33 .......T.......T......C..... GTCTGCTGGGTGGCCGGCAAGCGGTTTGCCTCG 23212 28 100.0 33 ............................ TCCGCCTCGCCGGTCGCGCGGGACCCGTTGGAG 23273 28 96.4 33 ........A................... TGCGGGCCGCCCGAGGCCAGCCGGTCGGTGGAG 23334 28 100.0 33 ............................ GTGAGGTCGCCCCACTGGATCCGGCCGAGTGCG 23395 28 92.9 33 ...............T...A........ TTCTTGGTCCGGTCGTAGGGCACGTCGTTGTTG 23456 28 89.3 33 .T...T............A......... ACCTTCGTTCGCCCGGAGGTCTGGGCGAACGAG 23517 28 100.0 33 ............................ CTGGTCGTCGTCATCCTCGAGGCCCTGATGCCG 23578 28 96.4 33 .......................C.... TTCATCGTCGTGGACGCGAACACGGTGTCGGTG 23639 28 100.0 33 ............................ TGGTCGGTGTGAAAGTGGACGTGCGTGGGCACG 23700 28 100.0 33 ............................ AACCCGCCGTTGAACTCGGTGTGGATGCCGGCG 23761 28 92.9 33 .......T.T.................. GGGAGGCACTTGGCGCGGGCGCCGTCGAACCGG 23822 28 89.3 33 ......G.T.......A........... CGACGCTGGAGGTCGGAGAGGTCGACGTTGCCG 23883 28 89.3 33 ...............T.....G.G.... GCCGAGGGCTGCACCATGGTGGAGTAGCGGTCG T [23902] 23945 25 75.0 35 C..........A........A.---..C CACCGCAGTGCCGACCGTTCGCGGCGCGGTAGGTG 24005 28 92.9 33 .......T.......T............ ACGGACGACACGATCAAGGAGGTGCGCGACTCG T [24013] 24067 28 96.4 33 ......T..................... ATCAGCCCCGAGCTGCAAGCGGCCGTGCTCCGG 24128 28 85.7 33 .G..........G...A......A.... ATGTCGGTGACGGGCCAGTCCCAGACCGGGGCG 24189 28 89.3 3 ...................C...C..A. TCA A,A,AT [24205,24207,24209] Deletion [24220] 24224 28 96.4 33 .T.......................... CTCGGCGACGCGTACGAGTCCGGAGCGCTCCAG 24285 28 92.9 32 .............T.........C.... ATGTGGCCGGCGTCCTTGGGGCCGGTGTCCGG 24345 26 64.3 32 GTTCT..........G.A...C--.... ATCATCGACGCAATGCCAACACGGTTCCAGAC 24404 27 67.9 33 .AG....A..T.....-AAT...C.... CCCAGACAGGATGGTGCCCGTGACTGACGCTGC 24464 28 85.7 34 C....T............A....C.... TTGTGAACACCGCGCTTGTCCGCAACCCCGACGG 24526 28 96.4 30 .......................C.... CCGTTCGCCATAGGCTCGCCGAGGACCGGC C [24537] 24585 28 82.1 33 .GA...T.C...C............... ATGGACACGATCGGCCTGGACACGATGTATGGG 24646 28 92.9 31 ..A....................C.... CAGACGGTGGTGAGCGTCGACTGCCTGTACG 24705 28 82.1 33 GGTC.T...................... CCGCCGCGGGGTACGAGGTGGGCGGGCGCGCCG 24766 28 100.0 33 ............................ GAGATCTCCGCCCAAGCGTCCGTTGACTTCGAG 24827 28 92.9 33 C............T.............. CCGACTCCCATCCCGGGAATGGACGGCCCCGTG 24888 28 100.0 33 ............................ CTGGTGCCGATCCTCGGCTCAAGGCCGACGATG 24949 28 92.9 33 ..T.....A................... TAGGCGAGGGTGGTGAGGGAGCCGATTCCGGCG 25010 28 89.3 71 .T.....G...............C.... ATGCGGAAGCCCGTTGCCCCGGACTTCGAGTAGTGCCGGGCGGGCACTACGGCCACTGCCACATCCCGGGG 25109 28 100.0 34 ............................ CCCCGATGATCGGTGACCTGGCCGACCCGCCCGG 25171 28 96.4 33 ...................A........ ATTTTGACGAAACCGTTCTGGACCTGGTCCACG 25232 28 96.4 33 .......................C.... ACCTGCTCGTCGCCGTCTTTGGGGCTGTACTTG 25293 28 89.3 33 ..T........A...T............ TGGTTCGGTGAGGCGAAGGACTGGGCCGTCCGG 25354 28 96.4 33 ....................A....... GCTACGGGTCCGAGCCGCCGCGCCGGCGCCTGG 25415 28 100.0 33 ............................ ACCGCCCGCACGTACGCGGTCGACCTGATCGAG 25476 27 92.9 28 ..T.............-........... TCGCTGTAGTTCTCGGTGTCGGCGTCCG 25531 28 92.9 33 ......T.C................... CTGGCGGACCAGGCCGCGACAGTGGAGGCTCGG AG [25534] 25594 23 78.6 18 .....................C.----- GAGGATGAGTCACTCCGG Deletion [25617] 25636 28 89.3 33 GT..T....................... AAGGGCGCCGGGACGTGGTACCTCGAAACGACA 25697 28 92.9 33 ...............T.......C.... CCCTGTTCGATAGTGGTTCCGTGGGCGGCCGCG 25758 28 71.4 33 .G.AGGTGT......T............ AAGCGAGTCGATTTGCCCGACCACGTGAGAGCG 25819 28 100.0 33 ............................ GTGTACGGGGCGCTCGAAGAACATCAGACCGCG 25880 28 92.9 0 ...................A...C.... | ========== ====== ====== ====== ============================ ============================================================================================ ================== 91 28 91.1 33 TCCTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : CATCTCGTTGAGGGCCCACGGGGGTAAATGCCTCAAGTACCGCCCCGCCAACGGGTTCCCGCCGTAGAGTACTTACCGCTGCACGCCTCCCCGGGAGGTGCGCGGAACCTCATTGACTCACCGAAGCGACGGCAACGCCGAGCAGAACGCACGACCCTCTCGAGGGATGTGGCGCAACCTCGGCCCAGTCTGCGCTCTGGAGATGCAATGTCCCGGTTCCTGCACAAGTTCGTCCTGCGCCGCGAGGTACTCCTTGAGACCTCACGCGTAGTGATCAGCGCGGTAATCCGCGCCCTGATCACCGAACTCGTCAGCTGGCTCATCTGAGCCAACGGTGACGGACCCCAAAGGGGTCCGTCACCCCTCATTTGCACACAACCCCCACTGGCTGAACACGTCTCCTCGCTACTGGATACACCACAGGACGAGATGCCCGGCTACCAGCGGATACCGCCGACACCGCGAACAGAGAAACCCCCGCCACCTCAAGACCCGCCCGG # Right flank : GGCGCCCAGAGCCGTACAGGGACGAGATGGTCTCGCGTTGCAGCGTGAGACCACCGAGAGCCGGCCACCGCACAGCGGTGCCGGCTCTTTCGGCTTACCCGATCAGGCAGGGCCGGAGTCGGTGGCAACCGTGCCTCTCGGGGCTCTCGGTACGGCGTGCCGGCTGGCACGCCGAGCGTGACGGCCTCGCGCCGGTTGAGACGCTCGGTGCGGGCGGAGCCCGTCGCCACGGTCCGCGCGGCGGGCTCTGCGGCTTCCGCCTCACCCTGCACCACAAGGTCCCGCCTCTGGTGCAGGGTGAGGCCGCTACGGTCTGGGCCCGAATCCGTGACACGAGCCACCCGGGTGCACCTGGTCACGGCGGCCACGGTGGGCCGGTTCTGCCACGATCCCGTAGTCACCCGGGCAAGGTCTTCTCGCCAACTGGCCGGGCTCGGCCAGGGGACTGCGCGGCCGACCGGCACCGGACTGCTGCCACCAGGCCGCCACGGTCACAGACT # Questionable array : NO Score: 4.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.11, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [67-73] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //