Array 1 15375-14866 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKQK01000001.1 Paenibacillus sp. PCH8 unitig_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 15374 33 100.0 35 ................................. TATCATGGATGGAAATCCTAAATCATTATGATCAT 15306 33 100.0 36 ................................. AATACTTGTTGGAACGCCTCTCTTGCATACCATGCA 15237 33 100.0 34 ................................. TCTACAGGTGTTATGGCAACTTGATTTGACTTGG 15170 33 100.0 35 ................................. TTGGCAGACCTACCATTGACGCTAAATGACCGCGA 15102 33 100.0 35 ................................. CACTTATCATATTCTTGCATTTTGTTAAACAAACT 15034 33 100.0 36 ................................. CCATACAAGGTCTTCGCCCTCGATCTTGATATACTC 14965 33 100.0 34 ................................. TTTGAAGACACTATGTTTGTTAGCGATTTAGCTC 14898 33 90.9 0 ..............A....A.A........... | ========== ====== ====== ====== ================================= ==================================== ================== 8 33 98.9 35 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : TGGAAGTAGGTGTGACGATTGCTTATTTTGATTACGTATGATGTAAGCACGATAGATAGTGAAGGCCGTAGAAGACTATCTAAAGTGGCGAAAAAGTGTGTGGATTACGGTCAGCGAGTACAAAACTCGGTGTTTGAATGTATACTGGATGCTGCCCAGTTTAGACGATTAAGATTCGAACTGGAAGAATTAATTGATAAGGATACAGATAGTCTTCGATTCTATAACTTAGGTGATAATTACAAAAGTAAAGTTCAACATGTGGGTGCCAAAGATTCCTATGATATGGGTGATCCGTTAATACTTTAGCAGGTGCGAATACCAAGCTCACATGATTTCCCTGGGGATTCGCACCTCGGAATTTGTCGAAAAGGTCTTTATTGTGACCTTTTGGCAACGATTTTTCGGTAAGTTGTGATTATACAGCCTACGTTAGATGTGAAAGTATCGAAAAAACGTAATTATACTATTGGGTTGCTGTATATACGTTCTTTTTCGCT # Right flank : CTTGATAAGAAGCCGCGCATGGCTTCGCTATCTAACTGCTCCCCATACGAATAATTACTTCACAGGTGGCTAAGCTGTCTGTGTTTTTTGATATGGTAACGGTTGGAACAACGTTTGCTACAGAAGCGATGCTGCCCGTTTTTGGAATGATCCATAAACATTTCCTCGCAAGGCTTAGAGGCACACTCTTTAAGACGTGATCTTCCATATTTGGCTAGCTCTTTCCCTAATACAAATGAACAGATGGTTCGTAAGATTCGGATACTCAAGATGTGACAAGAACATTTTGCAACATGCTTATTGATGTATTAAAGTAGGCACTTGTTAAACTTGCATTAGTGGTTCTAAAAAAACTGGTAACTATATCATTCGTAATCTCGTCTACTAGGTTGAGGTGATTGATCTTGAAACCATTTAAAAATTGGAGCCAGCGTCTGAGCATCCTTTTAATTCTAGTCATGATGGTTGAAGCCGGATACGGAAGCAGTGTCAAAGGAAAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 2 24139-23907 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKQK01000001.1 Paenibacillus sp. PCH8 unitig_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 24138 32 100.0 35 ................................ AGTTCCACGACTGTTTCTCCCTGAATCTTTTTTCC 24071 32 100.0 36 ................................ ATTGAGTATAAACATCACCCGGGCATCAAAGCGCCT 24003 32 100.0 33 ................................ TCCTATGATGCTCCGAGAGAGATCGAAGGCGTT 23938 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 100.0 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CCCCAAGGGAATGTAAAAGAACTGATAGAGTCAATCGTGGATAGATTATGCGGAATGGATGCGTTGACTTTTCTTACGGATATCCTTTTGTGGACTCCAGAACGTGTTGATATGAATTTGAAGCTTGATCGATTTCAATAAAAAACGGATATTCTATAATGATACGATGGTCATAGTATCATTATAGAATGAGATCAAATACATTGAATATTGTCTTTGGTTCTTTAGATGTTGAACTATGAAAATAAATTTTCTAAAGTTACAAAGATTAGACCTGTAAAAAGCGCTATTTAATGGTGGTGCGAATGTTAAGCTCACATAAAATCTCTAGGAGATTCGCACCTCGAAAATTGTCGATCAAGCTATTGTTGTCCCCTTTTGGTAACATCATTCTTGAATTAACTGGATTATTTGTATTAAGATGTATTTATTATTATTTACGAAATGACAGAATAACGGTAAAATATCTTTTTTGAAACGACTATACGTTACTTTTTGCT # Right flank : TTCCTTCCCAGGTAGGCTGATAGGTGCCAACTGCGGTCGCAATCTTTATAAATGCACTAAAATCGCAATCACATGTCAAAAGACTTACCATCATCTACACTAATCTGTAGCATGAGGTGAGCTTTTTTATATTTGATTGAATACAGTTATGACTTAGCTGCAAAAGTATTACTGCCTTCATAACAAATTACATAATATTCTAAAAATACAGGGTTTATAGAAGGGAAATGTATTTTGGTGTCGAAATTTACAATGTGAGTCTTTTTGCCTATGGATCTGGGATTAATGTCATGAAATTCAGTGGAGGTGAAGTGGTGTGACCTATATTGCGCATATCTGTCAAAAGGATGGAAGAATACAAACCGTTCAGGATCACTTAGTAGAGGTTAAGCAAGGTGCGGAGCAAGCTGGAGAGAAGATTGGTGTCAAAAATTTGGCAGGCATTGCTGGTCTTCTGCATGATATGGGCAAAAATACAGATCTTTTTCGAAACTACATTC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 28023-27243 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKQK01000001.1 Paenibacillus sp. PCH8 unitig_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 28022 33 100.0 35 ................................. ATATCATCCTCAAAGGCGTAACGAGCGGAGTCAAT 27954 33 100.0 34 ................................. CTTATCCTCCATCAACTGTTCAAGCACGGAATCC 27887 33 100.0 35 ................................. TTTTTATCTACAACGGTTGTATCTTGCGGTGCATC 27819 33 100.0 35 ................................. AATCGACATTGACGAAATGGTTTTTGTTGGTGGAA 27751 33 100.0 36 ................................. CATTTGTAAGTCCTGAAACAGTTGACGTGTTCGTAC 27682 33 100.0 35 ................................. ATCTGATCAGCGGCTAAACATCAGTTTGGAAGAAA 27614 33 100.0 34 ................................. ATTTCAGCTCATCGATCAGCGGGCAAGCAAACTT 27547 33 100.0 35 ................................. TGACATACATGATTACATCGAGGATTTGCGAGCTC 27479 33 100.0 35 ................................. TACTCTTCCATTGTTGATGACGGAACCCGTGAAAC 27411 33 100.0 35 ................................. CACTGGATCAATGACGATCTCGTTTCCAATTTCGT 27343 33 100.0 35 ................................. CCAGATAGGCTGTATGTCGCTCTTTATAATTCCGA 27275 33 93.9 0 ........................A.......C | ========== ====== ====== ====== ================================= ==================================== ================== 12 33 99.5 35 GTCGCACTTCGTATGGAGTGCGTGGATTGAAAT # Left flank : ATCGTACCTTTCCCCACGTTCGCCAGTCTCGCGACTTGCTCCATGGTGGTGGCTTTATAGCCAAACAACGCGAATGATTTCTCCGCCGAGTCAATGACCTGTTGCCTTCGATCAATGGTTCTCATGGTATATGCACCTCCTTGTTGTCTGAATGAGTAAAAGGTGTATCTAAAGTTGACCGGATTACATTTTCGGTCAATTGGTCGTTTATAACTGTAGCACTCGGACAGGGATGATGGATGTGATCTTTGTCATGGTGGGATGGGGGATGAAGAAGGTTTTTGGGGGAATCCGTATGTGACACAAACAGGTGCGAATGTGATGCTCACATGAAAACCCTGGGGGATTCGCACCTCAGAATTTGTCGAAAAGGGTGGAAATGTTACCTTTTGGCAATGGAATGTATAAATAGATTGATTAATGATATGGAAAGTCATAGAATAATAGTGAAAAAACGTTGTTTTGATGGTTCAAATGGTTAAGATACGTACTTTTTCGCT # Right flank : ATTTCGGGTAGTAATGAATCATAACCGTATTTTGTCGCACTCCGTATGGAATGCAAATCGAATCCCCAAAAAAGTCTTACCTTTATTATGCTAAGCATGAATAAGTGGGTAAGACTTTTTCATTTCAGAGAATTAAAAAATTAGATAATAATTCCTAAAACTGAAATGTCATATTAAATGCTGCTTATTTTAAGTTTTTTTGTTAAACAATGGTTTGACCTGTGGTAGAAAAATCAATATAATGTTATTAATTGTAAAAAAAGGAGTGGGGGTATGTCGAGGTATTATGATGGATACGGATTAGACTCGACTGTGACACTACTCAGAATGGCTTATAGCTTGAATAACTGGAGCGAAATAATTAGACTAGGCGAAACGTTATATGAGGAGTCCATTAGAATTTACAATTTAAATATGTTACTTGGAGATACACACATCGTAGAAATACATACAGATCGTGTGCTTGTTTATTATATGGGTTATGCTCTTTTGATGCAGGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 4 32253-31817 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKQK01000001.1 Paenibacillus sp. PCH8 unitig_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 32252 33 100.0 33 ................................. CGCTGCTTCGCATGCAAGAGAATTAATCCTGTA 32186 33 100.0 35 ................................. TCCAAATGCTGCATCAGGCCGTACTTTGCGATCAG 32118 33 100.0 33 ................................. CTTGAATGCCTGCCAGATGTCCCAGGCTGTTAC 32052 33 100.0 34 ................................. AACAGCAGCAGTTGCATCATCTACTTGTTTTGAA 31985 33 97.0 35 .........T....................... GATACCGGGTTCTTTATGGGTCCCAATGAAATCTT 31917 33 93.9 35 .............C.....A............. TCCAATCTCCTGCAAGAGAGATTCAACCGTCTTGT 31849 33 87.9 0 ...A...............A.A......A.... | ========== ====== ====== ====== ================================= =================================== ================== 7 33 97.0 34 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : GCAGCCGGACATTCTGTTGTTCGATGAGCCGACATCGGCACTCGATCCCGAACTGACGGGGAAGTGCTGCGTGTCATCAAGCAGCTGGCACAGGAGAACATGACGATGATGATCGTCACGCATGAGATGAGCTTCGCCCGTGACGTTGCGGATCGCGTATTTTTCATGGATAACGGAGAGATTGCTGAGGCGGGTCCGCCAGAACAAATCTTCGGCAATCCTAAGCTTGCGCGTACGCGGACCTTTTTGCAAAGGGTGGAAGTGGAATCATAGAAGGGCTTAACGGATATGCAGGCAGGTGCGAATGCCAAGCTCACATGAAATCCCTGGGGGATTCGCACCTCAGAATTTGTCGAAAAGGTCATTTTAGTTGCCTTTTGGCAATGAAAGCTTGAATATTCTGGGTGTTGTATATTAAAATGAATATCATAATTGGCAAGATGATCGAAAACACGTAATGAGTATATATACATATGCTATTGTTACGTGTTTTTTCCGCT # Right flank : CGGTGAAGTGAAGGGGGATTAAAGGCAAGGTTCCGTTTAGGTTAATTCAGATCTTTTGCTATTTGGATTATAATGTTGTTACTTAACAAAGAAGGAGGATTTACTTTTGGATTATCGCCAGAATGATGTAGATCGATATTATAGTGATACAGTTCCACGACCGCCTTATGTAGTACCAAAGACAAACGGCAAGTCCATAACATCTCTCGTCTTGGGGATTTTGTCATTGACCATTCTTTATTTGGGATTTGTTATTGGTATCATTGCGATCATATTTGCGTCCATGGCATTCAAAGAAATCAAAGTACGCATGGAACAGGGGAAAGGTTTAGCCATTGCGGGGCTTGTCTGTGGGGTTATTGGAACGGCACTCTGTACATTACTTATTGCGCTCGTACTGTTGTTTACTTTTTTTACCTCCAGCTCTGAAATTTACTCTACATATTAGAAATATGAAGTTAGAATACGAAGACGTATTTCACACTAAAAAAGCAAGGCCG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 5 1896018-1896593 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKQK01000001.1 Paenibacillus sp. PCH8 unitig_0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1896018 33 100.0 35 ................................. ATTTTATTGAATGCGTCCTGCATTGCGTTGTATTG 1896086 33 100.0 34 ................................. CTACATTACGGGTTGTTACTTCACCAGCAACTGT 1896153 33 100.0 35 ................................. CTACATTACGGGTTGTTACTTCACCAGCAACTGTT 1896221 33 100.0 34 ................................. AAAGGATGTCAGAGAAAGAAAAAATGAGTTCATG 1896288 33 100.0 34 ................................. TGCAGCGGCGTCCGATCGTCATATTCGCGTCCAT 1896355 33 100.0 35 ................................. ATGTTTAATAATTGGCATCTTGTATATCCTCCTAT 1896423 33 100.0 37 ................................. TGGTGGTGGTGTAACTCCTCCTCCTCCGGTAAGCGAA 1896493 33 100.0 35 ................................. CCATCATAGGGAAAATGGAGGAAATAAGAATGATA 1896561 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 9 33 100.0 35 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : CCCACAGCGGAGTGTATTCAGGAAGTACGAGCGCTGAACCCAGCGGGTGCCCTTATTGGCAGCGGTGGACTGTACACTGGCGTGGATGCGGCCAAAGCCCTCGCGCTCGGTGCGGATCTGGCTGGTTTTGGCCGATCTCTTCTCGAATCCGCGGTCGCTTCCGATGATGCACTGAATGAGCGATTGGAACAGGTCGAATTCGAGCTGCGTACAGTGATGTTTGGTATTGGCGCAGGGCGGATTGAGGATTTGAAGCAGACGTCACGTCTGGTGGAGGTGTAGACGTGGGGGAAATGAAGGTGCGAACCCCAAGCTCACATGATTTCCCTGGGGGATTCGCACCTCGAATTTTGTCGAGTACATCGTTTTCGTGACCTTTTGGCAACACTTGTGTTCGTTGAAGGATGTTTTTTATCACAAATGTTTCTATAATTTGGTGTAATGATTGAGCATACGTGATAATGTTTGAATTTGATGACGTTATTACGTGTGGTTTCGCT # Right flank : TTTTAGTTCAGAACTATACATATCTTTTGTCATTTCGTCGCACTCCGTATGGAGTTCAACTTATCAAATCCTTAAAGCCCCTTATCTATTTCGTGCTTGTTTTAACATAACCAGAAGTCAGAAGTAAGCCAAACAAACCGTCCAAAGTAAAAATGGACGGTTTGTTTGTGTTTCTCTTTAAATGTGACATTTCGCTCCATTGACAATGCTCAGCCCAGTTTGTTTTTTTTACACCTTATCATCATCCGGTATGTACTCTAACACATCTGTAAGAGTATAGTCGTTTCCTGTCATTGCCCGTAGAGTGTTCACGATGTTATTTAAGGTATCTAAATCAAGCCTTTTCGTTTTTCCTTCGCACAAATCATATATAAGGTTCGGTCTTACTTTTGCTTCCCTGGCCAGTGCATTTTTAGTGACGCTGGCTGCATCTAAAGTGTCGCCCAATCTTATTTTTATAGACATAGCCAATTCCACCTTTCACTCTAATGATAACCTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA //