Array 1 3006-2494 **** Predicted by CRISPRDetect 2.4 *** >NZ_CVRS01000124.1 Roseburia inulinivorans strain L1-83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 3005 29 100.0 37 ............................. ACAATATTCATCTTTCTTCTGCTCGCAAAGTTCGTAA 2939 29 100.0 41 ............................. AGTAGTCGCCTTGATAAAAGGGCTTTTGCCGTCATTTGAAT 2869 29 100.0 35 ............................. GATACAGTTGCCATGAAATCACCTGTCTTTCTATT 2805 29 100.0 41 ............................. AGTCTTTCGCTACAGAAGTACTTGTTCTATTTCCGAGACAT 2735 29 100.0 42 ............................. AGATACAAACGTCCAGCGATCCTTTTCCTCCTTCCCATTCCA 2664 29 100.0 42 ............................. CTGCTTCTCTTACCTTTTTTACATACTCAAGATGGTCTGCAT 2593 29 100.0 41 ............................. ATTCCAAATTGCAATAACAGTTTTTTCAAGCTCTGATGCTA 2523 29 93.1 0 ..........................G.G | T [2497] ========== ====== ====== ====== ============================= ========================================== ================== 8 29 99.1 40 GTTTTACCTTACCTATGAGGAATTGACAC # Left flank : ATTTGAGAAGAAATTGCGAGTATTGTAATTATAACGACTGAAAATACAGT # Right flank : TCAGTATTCATGTATAGGAGGATTACATGGTTTTAGAAGATGTTTTTTCAGATGAAAATCTGGAGGAGGCATTCGAATCGTTTGCGGATAAGCATGATAGCCATGGGCTGGATGGGGTAAAATTATCAGAATTACGTGCTTATTGGGAGACAAACGGGAAGAAGATAAAGGAGTCTATTTTTAATGGTACATATAAAGTAGGAGCTGTTGAACAAAGGCAGATTGTGAATCGTAAGGGTAAGAAAAGAACGATTTCGCTTATGAATTCGATTGACAGGTTTATTTTCCGTGCTTTATATCAAAAGATGGCAAGTGAGTGGGAGAAACAATTTTCACAGTATTCATATGCATATCAAAACAATAAAGGTGTGCTAACAGCGGTGGAACAGGCAGCAAAGTATATGGAAGAAGGAAAAGACTGGAGTGTTGAATTAGATATTCAGAATTTTTTTGATAATATTAATCATTCGATTATTATTTCAAAATTAAAGGCTGGGATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACCTTACCTATGAGGAATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 15315-16602 **** Predicted by CRISPRDetect 2.4 *** >NZ_CVRS01000105.1 Roseburia inulinivorans strain L1-83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15315 36 97.2 30 .T.................................. ATATGATTTTCACGGAGGAATCCAAGACAG 15381 36 100.0 30 .................................... AGCAGCACAGCTGATATTTACGACCTTATA 15447 36 100.0 29 .................................... GCAGAATTTAAAAAGAACGGTGTTGAAAT 15512 36 100.0 29 .................................... AAAAACAGTTACAAGTTGCTTTTGAAAGT 15577 36 100.0 30 .................................... GGAACGCATGAACTAATTAAAATTGGAGAC 15643 36 100.0 30 .................................... CAGGAGGAATACAGAGAGATTAAACCGTAT 15709 36 100.0 30 .................................... AGAAAAAGTTAGAGATTGACCCGCTTAATT 15775 36 100.0 30 .................................... GCCTCTACCGCCTTAAGAGTTGCATCCTCA 15841 36 100.0 30 .................................... TCGATGTGATAATCGGAATATTCGCCATCG 15907 36 100.0 30 .................................... CAACTCCGGTTAGTTTTGTTCAAGCGACGT 15973 36 100.0 30 .................................... TTCGAAAAGATCGGGAGTATTGCCAGCGTT 16039 36 100.0 30 .................................... TCCCAACCTTTGGAACGCTTCGGAGCAGGT 16105 36 100.0 30 .................................... CGATCCGCTTCTTCCGGCGTCTTTGCCGTG 16171 36 100.0 30 .................................... TGAAGGCCGTTCAACTGAATGTTGAATCCG 16237 36 100.0 30 .................................... GGATCAGAACGGATCCAGCCGCGACACGTC 16303 36 100.0 30 .................................... TTTAATTCACAATCAAGAAGTAGTGGTGTT 16369 36 100.0 30 .................................... TATGGAACTTCTTATACAAGTGATGAATTA 16435 36 100.0 30 .................................... TGTCAAAACGCAGCTACATTGATGCGGCAA 16501 36 100.0 30 .................................... TACAGGCTCCGGCAGGCGGATGGATAAAGG 16567 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.9 30 GCTGTAGTTCCCGGTTATTACTTGGTATGTTATAAT # Left flank : CAAGAAAGGATATCCGTTATATTTCTATAAAAATGAGACAACCAAGAGAAAAATTGATGTTATGATCCAAAAAGATGGTGTGGTAGTTCCGATTGAGGTTAAAAGTGGAAATACGCGGGCTAATTCCTTAAAATCTATTTTGAAAATGAATGCAGATATTCCTTATGGATACAAGTTTGTTGATGGTAATATAGGTGTAAGTGATGATGGTATCATTACATTACCGTTATATATGATCGCGTTTATTTAAAGTATTATTTTTTTTGACTGTGTGATATAATGAGCGCAAGTGAGAAGAATGCATTTATGCATTCGGCGAACGGCGAATGTCGATCATGTGCTGCTTTTGCACATGATATAATATTTTTAGAAGCTGTACCATTAAGCGTTTCGGACGTTTGCGAGAAGATGTCTACATCACTTGGCGTAATGGCAAGGCTTTTTCTTTTCCATTTATATTTTTTTAAAATATTATCACTGGATTCCCATAATACATTGTA # Right flank : TAGGGAACGGAAAACCCTGCATAATCCAAATGATTATGCAGGGTTTTAACTTTCAAAAAACAAATAAAAAATGATTATAGTAGACGGAAAAAACACATTTTAAGAAAAAATCAAGAAATATGAAAAGCATTTTCCACTATATCCCTAAACAAAGCCGTACTTGCCTTACTCGGGCATACGGCTTTTCGCTTTATATCTATGCTACCTATTAAAAGGCCTTATTTTGATACTCGTTTTTAATAGCGGAAATGTTCTAAGCAATTCATTATTGAATATTTTCGATGTGTAACCATAGTTCTAACTTCTGTGGTTTAAATATTTAAATAGCAATTTTTTGTTGATTTAAATTAAAATGTACAAATTATTGGACAGTTAAAGTGCTATATCTTCAGTAATGAAAAATCAGCAGGGAAAACCCTGCTGAAGGAGAACAATATTCTCCATATTATATTTTCAATCCGCGTAGTAAAATACGACAATCTTTATTATAAATAATAACG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTAGTTCCCGGTTATTACTTGGTATGTTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 25385-25223 **** Predicted by CRISPRDetect 2.4 *** >NZ_CVRS01000105.1 Roseburia inulinivorans strain L1-83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 25384 28 100.0 39 ............................ CTGTCTTGGTAAAACGTAGTCATACGATACATCAGATTT 25317 28 100.0 39 ............................ ACAACACCGATGATGCTTGCACTGATGGCTTACATATTT 25250 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 3 28 100.0 40 CAATCCACGCTCCTACAAGAGGAGCGAC # Left flank : TGTTTTCATTTTTTTCTGTATCCTGGATTTTCTCTGTATTCTGGATCTTTTCTGTATCCTGCATTTTTTCTGTTTCTATATTTTCGCTATTCTCCTGCATTTGTGCTTCTGATACCTCACTTTCAGTTTGATTCGCTGTATTTTGTTGGCTGCATCCTGATAGCATACTGATTAGCAATAATGCCAGCAATGCATAACTTCCCACTTTTTTCATATATGGCATTCTCCTATAAACAATGATAATTATTATCTTTTCGCCAAGCTACTGCCCTATTATTCTCAACTATCGAATAATACTTACTCATCCTTCCAAATTGTAAATGTGTACCGTCTCTGACAAATTACGTCATTTGATTGAAAACTATGTAAAAGCATCAAATAGGATTTCTTTATAATATCTATGATATCATATAAATAGCTTTATTTGACAGATATTTTTTAACGTCAAAGTATGTTAATTAACAACATAAGAAAAAGTCCTACCTGTCCTATTAGAAATA # Right flank : GGCAAAAATGCACAATTATCCTTATACTTATCTGTAATAATTATTGCATAGTATCTATAAAATCCCATCAACACTACAATAATTATTTCATGTAACACAAAAAATATTGTATTTCCCGGTGCGAATCATCCGCTTTTTCATGTTCGCTTATGATCCGCACCGCTTTAAAATATCAGCGTATTTTCTACTGATATTCCTTTTTTTACACCCAGACATTCTATTTTCTGTTTTTGTTTATCGTTTAAATAATAAATACGAATGCTGTCTTTTTCTTCGTCTATAATTTCCTGTAGTTTTCCTTTCAGCATGCGACACTGGGCACCATCTACACTACATTCAAAAACAGAATTTTGTACTCGTACTCCATAGTTTACACATTGTTTTGCTACTTTACGAAGTCTGCTCTTTCCTGCTTCATTTTCTGTATTAACATCATATGTAATCAATACAAGCAAAATATCACCTCTATTTCCACAAAAATGGCGGATATGCATCAATGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATCCACGCTCCTACAAGAGGAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //