Array 1 43809-43971 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHE01000001.1 Caldicellulosiruptor bescii strain RKCB120 Ga0154041_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 43809 30 100.0 37 .............................. ACGTAAAAAATAAGGAGTATGTAAGGGGTTTTTTGCA 43876 30 100.0 36 .............................. TAATTTTGATATTTTTCATAGTTAACACTTATCAGA 43942 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 37 GTTTTTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : TTCGAATTGGAAAAGCGAAGACAAACAGGTGAGTGAAATTCTTTTGCAATTCTCATAACATCATGCATAAGTAAATGCACTTTTTCTCACTCTCCTTAACAGACTGGAAATACAAAAGACATAGTAAATTTTAATATGAGATTTTGATAACTTTAAGGTCAAAAATTATGCGAATTTCATTTATGAACATGGAAAATTAGAATTTTCATTACATTAGTTAAATGATATTGTTTGTAATTCAGTTTATATTTTCTTTTTTGTTATGATGTTATGTTTAATTTTTGTATTTTGTATTTACTTTTTCCTATACTTTTTTACTTTTGTATTTACCAATTGCTGTCGACCTGCAATTTCCCCAAAAACCCCCGGGGATCGACAGCAAAAGGTAATTTCTGGTATGTGTTGATTTTCAAGAGCTTGTGGGGTATAATAGAAACAATCTATAGTTGCTTGAAAACATAACCATTTATTCCTTGCGACGTTTTTCAAAAACCTCCACG # Right flank : CAAATTAATATAAATATGAAAATCAAATAAAAGTAAAAAATGGAGGTGTTGACATTATGAAGATTAAATTAAACAAAAAGTCAATAATATCATTGGCAGTGGTGGTGACATTTATTATAGTAACTTTATTAAGTCCTGTATTTTATAATTGTAGCCAAAAGTCAAGCGTTAAGCAGGATATTACCAGCCAGCAACCTACAGATAGTAATACCCAAACAGAAAAATCTACTACTATAACAGATAAATTGTTCAACTGGATGAACATATTTAAAGCATATGCAGATAATACAAACAGTGACAGTGATGGCAATATAGATAATGAGATAGTTAATGATGCACCATATTTAGTTCCAGTATGGCAGCCAGGGGAGATTAACCCAGTAATATACCAGAAGAACGGAAAATTGTATAGGTTAAATGATGTTTCTCCAGAAACTTTAGCTAGGTATTGCAGGATATTGTATGAGTTAGAGGTAAAAGATGTAAAAGAAAAGTATGTT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 2 58766-62286 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHE01000001.1 Caldicellulosiruptor bescii strain RKCB120 Ga0154041_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 58766 30 100.0 37 .............................. TCAATCTCCAAAACCTTTATATACTTAAAATCATAAA 58833 30 100.0 37 .............................. TCTTTACCATATGATAAGACTTTCCGCTTCCAGGTTT 58900 30 100.0 36 .............................. TTTATGATTTGTGTTTTTATTTCGAACTATGAGGAA 58966 30 100.0 37 .............................. ATAAAAGCAATTAGTTTGTAACTAAGGTCATCTTTGA 59033 30 100.0 35 .............................. CAGCTTCAATCTCAAGTTTGTCTTGTTCATAATTG 59098 30 100.0 36 .............................. CTGCTTGGTTGCTTCAAGCTCTAAAACTTTGAGCTC 59164 30 100.0 37 .............................. TATGCATTATTTATGACAGAAATTTAGATAACGAAGG 59231 30 100.0 36 .............................. CAATATCTCGTATCTTCTCACTTGCCTTGTCTGTTG 59297 30 100.0 38 .............................. TATCTTGCCTTAGTAACAATTGCCTTCTTTTGGTTCGT 59365 30 100.0 37 .............................. ACTTTATTATCGTTCACAAGGTAGATAGATTTGCTCG 59432 30 100.0 36 .............................. GTGTACACATCTTTACCTTTTTTCAGATTATATACT 59498 30 100.0 37 .............................. ACTTCTCGATTATTTTTGAAAATAACTTTTCCTGTAT 59565 30 100.0 36 .............................. ATGAACCTAGCATTCTTACAACTAAAAAACATAAAT 59631 30 100.0 36 .............................. ATTTTTCGACTTTGTTTGCATCGGTAAAGGATACAA 59697 30 100.0 36 .............................. TTCTTTTTAGGTTTTGTTGATTGTTTTGAAATTTTA 59763 30 100.0 38 .............................. AAATTAATAGATGTAGAAGGTGAACCTTTCAAATATGA 59831 30 100.0 38 .............................. TTGTGTCTCATTCATTCTATCACTTCCTTATCCAACCA 59899 30 100.0 37 .............................. ACTCTTTCTCTTCTCTTTCTCTCTCTTGCATCATCAC 59966 30 100.0 37 .............................. CACGATAAGAAAAATGACGTAAGCAAATATTGTGCTG 60033 30 100.0 36 .............................. TAATTTCCTCCTTTCTAAATTTTAATCCCTAAATGG 60099 30 100.0 36 .............................. ACAACTTTGAAGAAGCTCCACAGACCACGCAGAACG 60165 30 100.0 35 .............................. CTTAATGAGTTCGTTTTGCTTACGGATGGTTTCCA 60230 30 100.0 36 .............................. AGTGTTTGGCTATCAGCTGTGTTAGTTTGGTATGGT 60296 30 100.0 36 .............................. AAATTTATTGCTGATGCATTTAGTTCTTTAGGAAGT 60362 30 100.0 36 .............................. AAATTTTGAGTGAAATCTTTAGTGAAAGTGATTTGA 60428 30 100.0 36 .............................. TCATCTGCAACATGTTGTGCGCAGTTTCAATGAAAT 60494 30 100.0 39 .............................. TATATATAACTTTGATATTTGTTATTTTTAGACTTTTTG 60563 30 100.0 35 .............................. TCTTTTCCAAATCCACCGTCCCATCCTGTGGCACA 60628 30 100.0 36 .............................. ATTGTATCATAGCTACATTTGTGTAAACACCTAAAG 60694 30 100.0 36 .............................. ATTGTATCATAGCTACATTTGTGTAAACACCTAAAG 60760 30 100.0 35 .............................. CCCACTATCTTATCGTAGTAAGTCACAATAGCCGT 60825 30 100.0 36 .............................. ATGTAACCACTGATTCTAAACGTACTACTTAAAACT 60891 30 100.0 38 .............................. TTTCATAAAACCTCCTATGATTCTTAATAATAGTCTTA 60959 30 100.0 36 .............................. TTTTTTCATTTTTCCATATCTCTGTCCAATATTCCC 61025 30 100.0 37 .............................. AGATATAAAGATTTACTTTTGCTGTTATAAAATCATT 61092 30 100.0 35 .............................. ATATCTCTTATCATAGACTTACAATCATCATAATT 61157 30 100.0 36 .............................. CAAACTCTATTACTCTTTGTTCCAATTCTTCAGCCC 61223 30 100.0 36 .............................. ATAGCTCAGGTTTGTATAATACATCACCTGATTCAG 61289 30 100.0 38 .............................. AGATATACAAGCTTATTCTTGCCGTTATAAAATTATTC 61357 30 96.7 35 .............................T ATGAGAGTAACGCTATTAGAATGGTAATAAAGTGG 61422 30 96.7 36 ...........C.................. GGTACAACAGCAAAAAATCCTCTTTATATGGCAAAT 61488 30 96.7 37 ...........C.................. AGGCTATCACAAGCCTTATCACCAGCGCCAATATAAA 61555 30 96.7 38 ...........C.................. TTTGAATTTGACACAAGCAGTAACAGGAAGTGTAAATT 61623 30 96.7 36 ...........C.................. AAATTATTAAAGTTCTTCAAACAAAAGAAGAAATTG 61689 30 96.7 36 ...........C.................. ATGCCTTTAAATTGTAACCTCTCAATCCTTCTACAA 61755 30 96.7 37 ...........C.................. GTAAAAATGGAGATACAATAAATGGAATACTTAATAT 61822 30 96.7 35 ...........C.................. AATTATAGTGGTAGTATACCTAATACTTTTCGTGT 61887 30 96.7 35 ...........C.................. ATAGAATATGTCTGCTTGGTGTATCGCAGGATTTA 61952 30 100.0 38 .............................. TTTGTTCCAGCATTGTAAACTCCACTAGCTGGTGAATA 62020 30 100.0 36 .............................. AAGAAAAGCGAGGCTGTGAGGTTTTTAATGCAGAAT 62086 30 100.0 36 .............................. TTACATTTTCTCTACCAAACTTCTCTGTTATTCTTT 62152 30 96.7 37 A............................. CTGGTAACCTGACTGTTGAATACTTGTCAAAAAGATT 62219 30 86.7 8 ...........C...............GGA TGAAGTGG Deletion [62257] 62257 30 70.0 0 .C....TTA..G..T...T..A.......T | ========== ====== ====== ====== ============================== ======================================= ================== 54 30 98.6 36 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : TAAATAGGCATCATTTCCAGATGCATCACCAATTAAAATATCACCAATCTCAACTATTTCCTCTATCAATAGCCTCTCACCTCACTTTTATGTTAATTATACCAATTTTATTTTCAAGATACAACCGAATTTTGAACTTGCAATCCTCGTTACTTAGTACACTTTTTAATTTTACATACCATCATTTAATTTTTAAGGTCAAATTTTATGCGAAGTTAATTAGCTTTATATGTCATTTTTTTCATTTTATATTATTTTTGCTTGTGCAAAAATTGACATTTTTAATTATGTACTTTGTGATTTGTGGCGTATTATGACTTTTGTATTTACCAATTGCTGTCGACCTGCAGTACCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCAAGAGCTTGTGGTGTATAATAGAAACAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTTGCATTCTGCAAGCTATCCACGG # Right flank : TAATATCTTGAAATTTGTTGATTTTCTTTTAGAACGGGTTTATTTGTAGCTCTCTTCTTGGGAACGATAAGTAAAGAATTTTCAAAAATACTAAATTAAGTTACAATTTTGGTAGCTTATATATCCTCCAAAGAAAGATTAAGATGAATTGGGTAAATATGGGATAAGAAGAATAAAATTATTGTCAACTTAGCCTGTTGAAGCAGGGGGTGCCAATGATTTTAACCATTTTGTAAGATGCATTGAGCCCCCTTAATCAATCATTCAAACAGCAGGAAGGACAAGCAGAAAAGGTAAATAATGAAAGAACAAAGTAACAGTTGTTGAAGTTGTATCTAAATATAGGGGAAGAATTTTTATAAAAAAGGTTTATGATAGTGTATCGACTGATTGATGTAACCAAAAAATTTTAAGTCAATTCCAATTTGGTTGATGAAAGCAAGTTTGAGGAGCTAATTCTTGAGCATTACAGAAAGCTTGCATGACGTGCTGTTTTTGAA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 3 83272-86076 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHE01000001.1 Caldicellulosiruptor bescii strain RKCB120 Ga0154041_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 83272 30 100.0 37 .............................. AGGCTTTCTAAAATTTCTTCAACGTCTTTTTTGCTTG 83339 30 100.0 35 .............................. AAAAAGCTGAGGAAAGTGATTTTCTATCAGGACGA 83404 30 100.0 36 .............................. TTGCTAAAAATGTCGCAAAAACCGTTATACCAGCTG 83470 30 100.0 35 .............................. TGCCTTATTGATGAATTATCTATGATAGATTTAAA 83535 30 100.0 36 .............................. AGGGAATTGTAAAGAAGGAAAATACCAGCTGTGATG 83601 30 100.0 35 .............................. CAATATTTTCATAGCTTTCATACACATAATTTTCA 83666 30 100.0 36 .............................. ATAATTTTCATTTGTACATAAATGGTGTTGAAGCAA 83732 30 100.0 35 .............................. AATCCTTTTAACCTCATGGGTCGTGTAGGGAGTAG 83797 30 100.0 35 .............................. TCTTAAGACCACTTTTTGTTTTAACAAGTTTAACA 83862 30 100.0 35 .............................. TTAACCTCTTGTCTCCATCAGGAACTGGAGCAAGA 83927 30 100.0 36 .............................. CGGGGATGTTTTTACCTGCCCAATTTTCGATGACTA 83993 30 100.0 36 .............................. ATTTCACAGATGATGCAGTTAGGCGTTCTTACAATA 84059 30 100.0 37 .............................. GCTGGCTGGGTTCTGTTAGTTTTTTTCAGTGTCGCCC 84126 30 100.0 36 .............................. GTCTTTTATCACTTCTCGTTTCACATCCCCTACCAA 84192 30 100.0 36 .............................. AATACATCATCAAATCCTCAAATTCTTGATCGTATG 84258 30 100.0 35 .............................. TTGTACACTTCAGGGTCTTTTGGGACAGTTCCTAA 84323 30 100.0 33 .............................. GCAAAAAATCAAGTACTTTTTTTATTTTTTAAA 84386 30 100.0 36 .............................. GCATTAATTCTTTTTCTGTTTCAGCTAACATAGCCG 84452 30 100.0 37 .............................. ATTTTTTGAATGAGATAATGCAGAAGACGAAAGGAGA 84519 30 100.0 36 .............................. AAGAAATAGAGAGAAAAAGAAAAGAAGAACAACAAA 84585 30 100.0 37 .............................. TTTGCTTTGCTTATCCCTTTAGCTTTGCTGCTTACTA 84652 30 100.0 36 .............................. CTATTTCAGTAGTTGCTAATGGTTTGTCAACGTCTT 84718 30 100.0 36 .............................. TTTTACAATTACTATTATACTCGAAATTTTTATTTT 84784 30 100.0 36 .............................. TAACCGGCTCTCCTGTTACCCTTATAACACTTGTTC 84850 30 100.0 36 .............................. GTGCGGTATCTGGAAAAGATTTTGTAATTCAAGATT 84916 30 100.0 36 .............................. AACGTTTTAAAAAGGATGGCTGAAGGTGAACGTGTT 84982 30 100.0 38 .............................. TGGAGAAATCAGGTAAACTGTCCATAACGTCCTCAATG 85050 30 100.0 36 .............................. GCATTAATTCTTTTTCTGTTTCAGCTAACATAGCCG 85116 30 100.0 37 .............................. ATTTTTTGAATGAGATAATGCAGAAGACGAAAGGAGA 85183 30 96.7 36 .............................C TAATATAGCAGAGCTATACTTTGTAGTGTTTCTTCA 85249 30 96.7 35 .............................C TTTTCATCTATGATGTCCATCAACTTTTCAACAGT 85314 30 96.7 36 .............................C ACAATGTACATTAATCTGTCAGGGAATATTGCTTTT 85380 30 100.0 36 .............................. AAGAAATAGAGAGAAAAAGAAAAGAAGAACAACAAA 85446 30 100.0 36 .............................. ATATTTGACCTTCTTACCACCTCAATCACCCTCTTA 85512 30 100.0 36 .............................. TAACCGGCTCTCCTGTTACCCTTATAACACTTGTTC 85578 30 100.0 36 .............................. GTGCGGTATCTGGAAAAGATTTTGTAATTCAAGATT 85644 30 100.0 36 .............................. TGTGAAATATTCTGTTTTGTTTCTTCTTCAAATATA 85710 30 96.7 36 .............................C CATCGAGTAATGCGGACTGCAACTTCTCATAATCAT 85776 30 96.7 38 .............................C CACACCTCACCTTCTTTTAACTGCTTTTCAATTTCCTG 85844 30 96.7 38 .............................C ACATAAGTAAAAACGGTAAAACTAAGTAGAACAAAAAG 85912 30 100.0 37 .............................. AAGAGCTTGAAGATTATATAAAACAAAAAAACACAAT 85979 30 96.7 37 .............................C TGACAATTAAAGCATATCAAAATGCCTCAGTAGCATA 86046 30 90.0 0 ...............G.........A...G | T [86073] ========== ====== ====== ====== ============================== ====================================== ================== 43 30 99.2 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAT # Left flank : TTTTTATAGAATCTTTCCAGTATCCATATATCTGAGAGAGCTTGGACATGGGCAATCATACCTTTCAATTTTGATTTATCTTTAAAATAGTTTATACCCCCATTGAGTGTGATAGTTATTTACATAAAATACTTTTATATAATACCTTTCGACATATATTGACATAATCCTCTATTTTAATGCAATTTTCAGAAAAATTGATTTTTTATTAGTTTTATCTTTGATTTTTAAATAATAATTGTGATTATTTTGCATTATTGTTATTACATTTTATTCCTTTTCAGCTTCTGTATTTAGTTTTATGAAATAAATTATGACTTTTGTATTTACCAATTGCTGTCGACCTGCAGTACCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCAAGAGCTTGTGGTGTATAATAGAAACAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTTGCATTCTGCAAGCTATCCACGG # Right flank : GGAGTCTGAGTGTTGGAAGTAGAAGAGAAAAGGAGACCTTCTGTTGGGGATTTAAATTGCTACCAACAGGGTGGTAATATGGTAGTGCAAGTGCATGGTTTGTATGCTTTTACTTTGGAAATTAGGGAAATAAAAGAGTTTTTGCTTTAAGAATTGAATAAAAAGAAGTGTCTTCTTTTAGAAAACTGTGTTAAGGAAAGTTTCTCACCAATTTTATAAAAAAAGGGGCTTTTCATAGCCCCTTTAATCCTTGTCCGTGAACAAGTATAATCTTTTCAGGTTCTAAAATTCTTAATGTGCGTAAAATTTCAAAGTAGTTAGAATGAGCAGAAAGAGGAATATCAAAATAGTGAACCTCAAAATTCTTTATTACCTTTATCATCTCATGAATATACTGCTGTTCTTCTATATATCCGCTTTTGATAAACCCAAATGCACTGCCGTTCAAAAGTTGAACATACTTTACTGCAATGCTGTTTGGCTGAAGCATACCAGAGCTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 111851-112674 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHE01000001.1 Caldicellulosiruptor bescii strain RKCB120 Ga0154041_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 111851 30 100.0 36 .............................. CGATGAAGGATTGTAGGATTTTTGCAATATATAAAC 111917 30 100.0 35 .............................. TATAATAGTTGCTCGCATAGGAAACTCTATACATT 111982 30 100.0 36 .............................. AAAGTTTATCTATTTCTTCTTGCGTTTTATTTGTTT 112048 30 100.0 37 .............................. AAATATTTAGCGCTTTGTCTTTAAATTGAGAATATAA 112115 30 100.0 37 .............................. GTCCCTCACAACGATGAAACAATCAAAAGAATCTATT 112182 30 100.0 36 .............................. TAAACAAATTAATGTAGCTAAATTTGTCGCCTTGTA 112248 30 100.0 36 .............................. TCCAGTGGGATGGAAAGAGATGAAATAATGTCAAAA 112314 30 100.0 37 .............................. AAAATAATCAAAGATTCTTTTACCCCACCTACACATC 112381 30 96.7 36 .............................T CAATATCGAGAATAATCTTTCTTCCTTCAGTAGTTT 112447 30 100.0 36 .............................. GATAATGAGGGATTGAAAGTTGGTGAGCTTGTGAAA 112513 30 100.0 36 .............................. TTCCTTGTATTCGCTACAGGCAAAGTGATTTTACCA 112579 30 100.0 36 .............................. TCATAATTTAATCTTCTGCGTGTTTGTCTGCGCAAA 112645 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.7 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : CTTCTCTTCTATTTTTTGAGCTGGCAATTTTTTAGTTTCTGTTGTAAGTTTAATCATCTCAAAGTTTATTTTATAACTTTTTTTGGCAGTTGAAAAGTTCAAAAAATATGCGAACTTTTAATAATGATAGCAATTATTTAGTCAGTGTGCAACCTGTATAGTCATTATATTATCGTTCAAAATAAAAAGATATGTGTCAAAAATTTAATAAAACAAAATAATACTTTTACATTCATTTTGTCCTTAGATTTACTTTTATGTTTGTTTATATTCTTCTATATGGCTCCATGTGTTTAGAAAAATAAGACTTAAATTAGCTTTTGTATTTACCAATTCCTGTCGACCTGCAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGACAAATTTTGGCATGTATTGACTTGTGGGCTTTTGAGGTGTATAATAGAAACAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTTGCATTCTGCAAGCTATCCACGG # Right flank : CGTTATTATGAAGATTTTGACACTTTAGAGCAAGAACTTGATACAAATATACTTGACAATTTTGAACTTGATGAGGCGGCACCATTTTGATGGTATATGAAGTTACTTATAACAATTCAAGACTTGTGTTTGAAGGAAAAGAAATTAATTATTTCAAGATTTTAGAGGCTTTAGATAAGCTTAGAGATTTGCGTGACTATATTGAACTGTTTTACACTGAGTATTCTGGTCTTCCTCTTACCTCTCTTCCATATGATGTTTTACTTGATATTTTTACAAACTATCTTGACTTTATAGGTGTACAAATAAAGGTTATAGGTAGGTAAACTTTTTTATGGGTGACAAGGCAAAAATAATTGAGCTCATGAAAGCTATTAATAAAGCTAAAGGTGGAAATGTGATAGGTTTTTTGGTAAGATAGCACCAAAATCTATTCCGGTAATTCCAACTCAATCACTTATTCTGAACAAACAGCTAGGTATTGGTGGATTTCCAGGTTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 5 121301-124217 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHE01000001.1 Caldicellulosiruptor bescii strain RKCB120 Ga0154041_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 121301 30 100.0 36 .............................. ACATAAAAAACGTGCGATTTCCTTTTTGCCTGTTTC 121367 30 100.0 33 .............................. TAGATAAACAGTTTTATTCACAAATGGGGTATG 121430 30 100.0 34 .............................. TGGTTTGACACGTGTAAGGTTTTCATGGGTGCCG 121494 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 121560 30 100.0 36 .............................. AATCAGCTCCTTCTTGAGCATCATACATCACCAAAA 121626 30 100.0 37 .............................. CTCTTCCTGAAAGCCCAGTTAGCTTGCTCAAGATTTG 121693 30 100.0 36 .............................. CTCTAAATTGTCCACGCAAAACATCTATTTCCTCGC 121759 30 100.0 33 .............................. AAATTTATATAAAAATATTTTCTGCACATTTTT 121822 30 100.0 37 .............................. TCGACCACTACCCAGCGAGAGTTTTTTGGAACAGCCA 121889 30 100.0 35 .............................. CCGCATGATTGGCAGTGGATAGCAGAGCTTGACGA 121954 30 100.0 37 .............................. ACAGCTTTTGCCAAATCACGATAAGTAAGTTGTCTTG 122021 30 100.0 36 .............................. AAACTCTCAGCCTCTTTACACAAGTTATATAGCCTT 122087 30 100.0 36 .............................. TCATATAAATACCCCCCTATCTTATTTCTTATCTTG 122153 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 122219 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 122285 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 122351 30 100.0 37 .............................. TGGAGGGAAGAGTGATGGTTTATCAAATCAAAATTGA 122418 30 100.0 35 .............................. ATTCTTCTTTCTTTTGTTTTTCATAGTTTTCCTGA 122483 30 100.0 35 .............................. ATTCTTCTTTCTTTTGTTTTTCATAGTTTTCCTGA 122548 30 100.0 35 .............................. ATTCTTCTTTCTTTTGTTTTTCATAGTTTTCCTGA 122613 30 100.0 35 .............................. ACAAAATTTACAGCTATGCTCAAGAAATGATGAGC 122678 30 100.0 35 .............................. CCATTAACATGGAGATATGCTTCCTTCTGTGCAAG 122743 30 100.0 33 .............................. TAGATAAACAGTTTTATTCACAAATGGGGTATG 122806 30 100.0 34 .............................. TGGTTTGACACGTGTAAGGTTTTCATGGGTGCCG 122870 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 122936 30 100.0 36 .............................. AATCAGCTCCTTCTTGAGCATCATACATCACCAAAA 123002 30 100.0 37 .............................. CTCTTCCTGAAAGCCCAGTTAGCTTGCTCAAGATTTG 123069 30 100.0 36 .............................. CTCTAAATTGTCCACGCAAAACATCTATTTCCTCGC 123135 30 100.0 33 .............................. AAATTTATATAAAAATATTTTCTGCACATTTTT 123198 30 100.0 37 .............................. TCGACCACTACCCAGCGAGAGTTTTTTGGAACAGCCA 123265 30 100.0 35 .............................. CCGCATGATTGGCAGTGGATAGCAGAGCTTGACGA 123330 30 100.0 37 .............................. ACAGCTTTTGCCAAATCACGATAAGTAAGTTGTCTTG 123397 30 100.0 36 .............................. AAACTCTCAGCCTCTTTACACAAGTTATATAGCCTT 123463 30 100.0 36 .............................. TCATATAAATACCCCCCTATCTTATTTCTTATCTTG 123529 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 123595 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 123661 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 123727 30 100.0 37 .............................. TGGAGGGAAGAGTGATGGTTTATCAAATCAAAATTGA 123794 30 100.0 36 .............................. ATTAACGCATCGTCGCTATTCAGTTTGTCCTCTCTT 123860 30 100.0 37 .............................. TCAGCTTCTTTTTCAACTTTTATGTTGCTTTTACTTA 123927 30 100.0 36 .............................. AGACTTTTTAAAACTGTTAATTATTTTTTACCTATT 123993 30 100.0 36 .............................. ATGTGATAGCAAGGAATATACGATTTAAAAGAGGTG 124059 30 100.0 35 .............................. TTGTGTTCTGGGTCATATAATCCATATTTTGCAGC 124124 30 100.0 34 .............................. TTGCTTTCGTTTTCTCGCTCACAGTATTCAATTG 124188 30 96.7 0 G............................. | ========== ====== ====== ====== ============================== ===================================== ================== 45 30 99.9 36 ATTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : CATTGGATTTTTATACATTGAAAATCCTTCTTTTATTCTGTTTATAAACCAATCACCATAAAATGCTGGAATATCTGTTCTTCTGCTTGCACTAATAATCATCTTACTGTAAACTTCCTTCTTTGATATAGGATATTCAAAAAGATTTGAAAAACATTGCTTTTATATTTTTATTTTACCATATATTTGCTCAGGACAGTATAAAATTATTTCATCAAATATTGCTATTTATTTTGATTTTTCTATATTATGTTATTAATGTTTATACATTAATTGCCATATAATGTTTTGTGCTTTGCTAATAAAGAGAATTTTAGATTTTGTATTTACCAATTGCTGTCGACCTGCAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGACAAATTTTGGCATGTATTGACTTGTGGGCTTTTGAGGTGTATAATAGAAATAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTATGAGATTTCTCAAATTATCTACGT # Right flank : CCCTCGATGTTTTTTCGTTTTATTTTGATCTAATTCTGTGCAAAATTCGGGTATAATTCGATTGGCTGTTGGTTTTGAGGTTTGGGTTTTGTAAGAAGTTTCCATTTGTAGATGTTTGACTTAAGTAGGAAGTTGTTTAGAGATTGGTTTAAAAATTGAGATACTTTAGAGTGTTTACTTAATTTTACCGGTATTTTGGAAATATAGTGGAAAGGTATGTTTGAAAATTTATAAGAAATTAGTGACAATGGGGTGGAAAATTATGATAAAACTTAATGAGTATGGGAATATTATTTGTTCAAGGGAAAATGGAGAAGTAGTAAGAGAAAAAATATTAAAGGAAATAAAAAATGGTAATATAGTTGTAATTAATTTTGAAGGTGTTGAAATGATTAATCATTCTTTTGCAGATGAAGCATTTGGGAAATTACTTTATGATTTATCAGAAGATGTCCTTAGAAATCAAATAAAATTTGTTAATGCTAATGATGACATAAAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 6 128295-128653 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHE01000001.1 Caldicellulosiruptor bescii strain RKCB120 Ga0154041_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 128295 29 100.0 37 ............................. ATTTCTTTACCGTCTTCAGAAGTGTAAACTACCTCAA 128361 29 100.0 37 ............................. ATTTCTTTACCGTCTTCAGAAGTGTAAACTACCTCAA 128427 29 100.0 36 ............................. TTTGCAACCTCTCTTGTCAAAAATACCTGACCGAGA 128492 29 100.0 37 ............................. TCCCTCTGAACAAAAACATCAATATAAAAACCATCGA 128558 29 100.0 37 ............................. AGCAGTTGCTAAAAATAGCAAATAAGCGCAATGAAAA 128624 29 96.6 0 ............................G | G [128650] ========== ====== ====== ====== ============================= ===================================== ================== 6 29 99.4 37 TTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : GGCAATTTTTTCATTCAATCTAAATTAAACGAAACAAAGGTATATAGTGGTTTAGATTTAACCAGAGAGCAAATAAACACAGGTTTAAAAGATGTTGCTGTTAAATTAAAAGATGCTACAGCGATAAAATTTCCATTTTTAGAATTGGCAAAAAACGATGTAAAACTTCCAGATGGAATAGTACCAGACGCAACAGTAAGTATAGAGAGAATTTTAAAAGAAATAATAGAAGGTAGAGGTAATATAGAGAATAATTTTGTATACAAATTAAACTTAAATTCTTATGTATTTGACTGGCCATGGTTTAAAGTAATAGACAGCGATGGCAGATTAGTAAATGCAACAACAGCAAGAGATCATGAAAAGATGTTATATTATGCACAAGAAGCGTTTAATCCAAATTCTAGATAAAGAATGTTCATGATTTATAGATTTGATAAGAATGGAAATTTAAATTTACTTGATAGTTATGATAAGGTTGCTTCAAATGTTTTATTTAG # Right flank : GGTTGGGGTCTGAGTGAAAATTTTTTGACCTTTGAAATTCCTTTAACGGAGCATTATGCTGCTTTTGAATTTTTACTCAAAGGCTAAAATAATTCTTTTAAAAGATTTTGCCAAGTGCAGTTTGGCAGACAAAAAAGACAACAAAAATATTTTTTTGGTTTTATTTTATTTCGTGAGATGATATAATCTTTTTAGAAACTATGTTGTATATTTTTTTATTTTCATGAAATCGCTTTCCTATCTAAAATATTAAAAGTTAAGGTGATTGAGTATGTCGTTAAGAATGCCTTATTTAATTAGCGACGGTATGGTGCTTCAAAGAAACAAACAAATAAATATCTGGGGCTGGGCTGAACCATGCAAGATGGTAACAGTAAATTTCCTGGGAAAGTCATACACGGCAGTAGCTGACCACTTGGGAAAATGGAAAGTTACTTTGCCACCCATGGATGCCGGCGGTCCATACTTTATGGAAATCAAATGCCAACATCATGCTGTTA # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 7 330241-339053 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHE01000001.1 Caldicellulosiruptor bescii strain RKCB120 Ga0154041_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 330241 29 100.0 36 ............................. TAAAGAAAGAGGGAAAGTAAATGGCTTTGATAGATT 330306 29 100.0 36 ............................. CGCATTAAGCCACTGCAAGGTAGAATTTGACCAATT 330371 29 100.0 36 ............................. TGTATTTGGACTTTAAAATTGTCATTTGCAATATCA 330436 29 100.0 36 ............................. GTATGATACAAATGGTAATGAGATTAGATTGTATCT 330501 29 100.0 35 ............................. CAATATCCATATTTGCGAGGTGTAGATGGTGTCGA 330565 29 100.0 36 ............................. ACACTTAAAAAACTTAATGTAGCATTCATTGGTGGA 330630 29 100.0 37 ............................. TTTTATTTTCCTTGTTCGTGTATTAAAATCATATTCA 330696 29 100.0 37 ............................. ATTGAAAGCAAACCACAGATTGTGAATGCTGACCAAT 330762 29 100.0 36 ............................. TAAAATTTCTATATCGCTAAATATAACAAGCATATA 330827 29 100.0 37 ............................. ACGCTTCTAACGCAACTGTTTATGACGTTCATAGGTG 330893 29 100.0 37 ............................. TCAGTTAATCATTTTAAGCGCTTGGAGCCTTTTTGAT 330959 29 100.0 37 ............................. TTGAGAACTTTTATATTAACTCTATCAACTAACCCAG 331025 29 100.0 37 ............................. TTAAACCAACTAAGTATGCTAAATCAAAAGGCAGCGA 331091 29 100.0 35 ............................. ACAATCTTGTTGGAATATTTTCAAACAGAGCAACT 331155 29 100.0 37 ............................. AAGATGATGTAGCACCATATGTCGCACTTGGCTTTAG 331221 29 100.0 37 ............................. TGAAAACAAGAAAGATTTTAATATCAAGCCACTGGAC 331287 29 100.0 36 ............................. TCAACAATTTTATAGCCAAGTGGTGGAATTCCACCA 331352 29 100.0 36 ............................. CTATGATTATTATAACAAAATGTTCTGTTCCTTAAA 331417 29 100.0 37 ............................. CGTGTATCCCAAGTTTAACGCACATCTCATTCACCTT 331483 29 100.0 36 ............................. TTGATAATATATTTGACTTTGCTCATCACTTTACAG 331548 29 100.0 37 ............................. GCACCAAACAAGCTCAAAATAGGTATTGCCTGCCTTA 331614 29 100.0 36 ............................. AGTGATTTCTTTATTGAGTTCCTTTTCTATTTCTGC 331679 29 100.0 37 ............................. ACAAAAATGGTAGAAAACAACAGAAAGTATAAATTGT 331745 29 100.0 36 ............................. CTTTGCAAAGATAAAAAATGCTGGTTGTGTGGAGGT 331810 29 100.0 37 ............................. CCTTTCTTTTTTTTTCTAACAGACCAGCCCTACTCGG 331876 29 100.0 38 ............................. GTTGTCAATGAAAATTGGTGCTGAGAAGTTGTAATATT 331943 29 100.0 36 ............................. GATTTCTGATGGAAATCAGGATATTAGCCTCTGGTA 332008 29 100.0 36 ............................. TGTCTGTTTCAAGGCGTCTTATAAGCTTATCTTCTG 332073 29 100.0 37 ............................. CTTTTTCTGTGCAGCATTGTAAGCCTGCATTACAATT 332139 29 100.0 37 ............................. GCTAAACCACCAGCTAATAATGTTGCTGTTGCCACAT 332205 29 100.0 38 ............................. GTGCATGTGCATGAGCCGATTCAGAAGGGTTAATCCCT 332272 29 100.0 36 ............................. TGAATTTCATGTATCATCAAATAATGTCTCAAATAA 332337 29 100.0 39 ............................. CTGGAAGCACAAGGGATTATAAAATACGAAATTGATAAT 332405 29 100.0 37 ............................. ATTCGCATTGATGAGATTAACAGAACAATGATAGCAG 332471 29 100.0 37 ............................. GTCGAATACTCTAAATCTTCAACTGTATTATAAAACC 332537 29 100.0 37 ............................. ATTCGCATTGATGAGATTAACAGAACAATGATAGCAG 332603 29 100.0 37 ............................. GTCGAATACTCTAAATCTTCAACTGTATTATAAAACC 332669 29 100.0 33 ............................. CAATTATATGCTTGTTATATTTAGCGATATAGA 332731 29 100.0 37 ............................. GCTTGAACTATAAACTGTTTTGTCGCTGGTGAAAGTG 332797 29 100.0 35 ............................. AATAATCAGTAGGGCCCATTATTTTTTCGCCAAAA 332861 29 100.0 37 ............................. CTCTATTTTTTTATTTTTAGAAGGGGGAGTAGTGATG 332927 29 100.0 37 ............................. CTTGCTAAAACTGTAGTTTTTTTGCTTGTAGGTGACT 332993 29 100.0 37 ............................. CAGGTAGGATATTTCCCTTTGTATGCTGCAGGTTATA 333059 29 100.0 36 ............................. TTAATTCAAGCAGTTTTTTAGAATTCTGTTCAAGCG 333124 29 100.0 36 ............................. TTTATAGAAAGCGCTATCATATCGATTGCGTGCAAA 333189 29 100.0 36 ............................. GCAGTCTTTGTCAAAAACTTTTATAAACATCTTCAT 333254 29 100.0 36 ............................. ACGGCAACTGAAGCAAAAGCAAGATATGATGAGTAT 333319 29 100.0 37 ............................. TTTTACTGTTTGATAATGTGCAAATATTCTGTATATG 333385 29 100.0 36 ............................. CGGAAAACAAATTTGTACTTCCAATCATTCTGCGGA 333450 29 100.0 36 ............................. CACAGATATTGTTGAACTTCTGGGAATTCTTTTGCT 333515 29 100.0 36 ............................. TCAGGTAAATTCGGAATTGTACCCATATCATAATCC 333580 29 100.0 36 ............................. GAAATATCCCTAAAACCATGTCAGAACTCTTCATTG 333645 29 100.0 36 ............................. CAAGAATCTTTATCTGCTCTAGTAGGAAGCTTTGCT 333710 29 100.0 36 ............................. CAAGAATCTTTATCTGCTCTAGTAGGAAGCTTTGCT 333775 29 100.0 37 ............................. GCTTTATCCGGGCAACTGGGATACTCAAACGATTGAA 333841 29 100.0 36 ............................. GCGAAAGTTTTGATTGATAAAGAAGGTACTTTATGG 333906 29 100.0 37 ............................. TGTTTCAATAATATTCGTTCCTGTCGTATCATAGTAA 333972 29 100.0 36 ............................. TCTATACCTTCTATTGAAATTAACATATTGTGACCT 334037 29 100.0 38 ............................. TGGTGGGTGGCATAATGATACTATAGTTACTGTTGAAG 334104 29 100.0 37 ............................. ATTGCAAAGTGTAACGTTAGTTTAAAAATATGTGAAT 334170 29 100.0 37 ............................. GGAGGTAAGACAGTTCAAGCTAGAAGACATTCAGGTA 334236 29 100.0 38 ............................. CTTTTTTCTTGCAATCTTCATATGTTGAGCTTTGGTAA 334303 29 100.0 38 ............................. CTTTTTTCTTGCAATCTTCATATGTTGAGCTTTGGTAA 334370 29 100.0 36 ............................. TTCGGACCAGTTGCCGAGCTGGAACGACATAGCAGA 334435 29 100.0 37 ............................. TAAGTTTTCTTGAATTCATTGCTTCACCACCTTTCTT 334501 29 100.0 36 ............................. AAACAAAGGAGATTCAGCAACAGATTGAAGTAGTAA 334566 29 100.0 37 ............................. GTGAAAGGCCGAAACAAACGTCAACGAATTGACCCTG 334632 29 100.0 36 ............................. CACTTTTGCTAAAACACCGTCAATGGTCAGGTAGCC 334697 29 100.0 36 ............................. GGTTTTCCCCAGAACAACAAACCGACATTCTTTTCT 334762 29 100.0 36 ............................. AATATGGGAAGAGGTAGGTACAGAGAAAATAATTAA 334827 29 100.0 37 ............................. AAAGGTTGGGTATTTACTTGGCTTGCCTTTAACGATA 334893 29 100.0 36 ............................. TGTGCTTATTCGTCGTCAACCTGATGTGCCTTCTAA 334958 29 100.0 36 ............................. TTTCTTTTTAGAAATATTAAAAATATGGATTGACTT 335023 29 100.0 37 ............................. TCAACCCATGGCTGAACCAATCGCTTACCAATAGCAG 335089 29 100.0 37 ............................. TAGACGCCCAAACATAATAAAGTGCTTCAGGTATTTC 335155 29 100.0 36 ............................. TATTCTGCCGAGTTCATGTTGTATCACCATCTGCTG 335220 29 100.0 37 ............................. TTCTTGTTCAGTTGCTACTATTCTTACTACATTACCT 335286 29 100.0 36 ............................. AAAAAGTTTGCAAGTTTAATTTTAATGTCATCAGGT 335351 29 100.0 36 ............................. AATATGGAATGGTCAGAGGGTATCAAGAGTATATTA 335416 29 100.0 36 ............................. TTTTTATACTAAAATTTTGCACAGAAATAGGGCAAA 335481 29 100.0 37 ............................. GAAATACAGCGCAATAATAACTATATCCTCTGCTTTT 335547 29 100.0 37 ............................. GATTTCTGATGGAAATCAGGATATTAGCCTCTGGCAG 335613 29 100.0 37 ............................. TTGAACTTGTATTTTAGATAATAAGTGTCTGTTGCAT 335679 29 100.0 37 ............................. GCAGGATTCATACTTGGCCGACCTCGCTCAGGTAAAA 335745 29 100.0 36 ............................. AAAGATATAAAAAAATTTAAAGACAAAGCATACTTC 335810 29 100.0 37 ............................. TGTTCAACCTACTTTCTTTTGTGAGTATATCTCTATT 335876 29 100.0 36 ............................. CAGAGCCTGCGGGGGAGGTCTGGAGGGGGAAAGCCT 335941 29 100.0 35 ............................. TCTTGAGTAGGTCCCATTATCTTTTCCCCAAAATC 336005 29 100.0 36 ............................. ACCAAAAGTAATTCCTCATATTAATGTGTTTCACTT 336070 29 100.0 37 ............................. CGAAATCATGAACAGGATAAAAATAATTAATATAGCT 336136 29 100.0 36 ............................. TTTTTCAATTAATTTATCTTGGTCACCTAATTTATC 336201 29 100.0 37 ............................. GTCATTTACATTGAACTTTTTCAACCAGTCATTGGTG 336267 29 100.0 36 ............................. AGGAAAGTAGTTTTGTATGTGCTTCCTGCAGATGCA 336332 29 100.0 36 ............................. GATCTTATACGATTATAATTGAAAAAAAGTATAATA 336397 29 100.0 37 ............................. GTACTCTAAATATTCAGCTAATGACATTTCTGTATCA 336463 29 100.0 36 ............................. AAATGCAGCAAAGCAAGCTGACCTTGACGCCCACAT 336528 29 100.0 37 ............................. TCTTCATGGAATCATATAAAAAAACAATATGTTGCAA 336594 29 100.0 36 ............................. GAAATCAAGAAAAAGCCAGCTTCTTTAATACAGCAG 336659 29 100.0 36 ............................. GCCGACCCAGATGGATATGGGCATCTGAATATGGCA 336724 29 100.0 36 ............................. TCTTTGTCTTTGTCTTGAATCAAAAGTTTTTTGATA 336789 29 100.0 37 ............................. GCAAAAACGCGAGCGGGTAATGTATTTGATACAGATT 336855 29 100.0 37 ............................. TACAGACCCAGTTAGTTACTTTAAAAAATTTGGCAAG 336921 29 100.0 36 ............................. AAGATTAGTTTCTATGTTCTGTTTGTTCAGCTTTCA 336986 29 96.6 37 .....................T....... CACACTGAAAAAGAAATCAATACATAAAGATATAAAT 337052 29 100.0 36 ............................. GTTGATGGTGTAACGTCAGTGACAAATTTGCAAGCG 337117 29 100.0 36 ............................. AAAGTGAAGGCGGTTCAAAAAGTATAACACAATTCA 337182 29 100.0 37 ............................. ATTGAACGCAGAGGTGAAGGTGATGACTGGTATTATG 337248 29 100.0 37 ............................. AAGATTCAACTTCTACTAACACAAAATGCTCATAAAA 337314 29 100.0 36 ............................. ACTACCGCCCGCTGACACTGGAGACTGGGGTGATAA 337379 29 100.0 37 ............................. TCTAAACCACCCGAACTAATTTGCTCTGAATAGCTAA 337445 29 100.0 36 ............................. ATATACTGCTAAATAATAAAACCTTACGTACAACAG 337510 29 100.0 36 ............................. GTTGACGACAAAGGAAATATCAAAGTTGGTACAACT 337575 29 100.0 38 ............................. GATATTTTTGTTTGTTCTAGTTCATAACTATACCCATC 337642 29 100.0 36 ............................. TTTGAAAAGGAAGAAGGTGATAAAGGAGAAAAAACA 337707 29 100.0 37 ............................. AAAAGTTGTTGTTACACAAGAATTAGGCAGACAATAC 337773 29 100.0 36 ............................. TCGAGTTTGTTGTTGACGACGACGGCACAGGGGAAA 337838 29 100.0 39 ............................. CTGGTAAGTATTAAAAGGGTAAGTCGTCATCGTTGCTTG 337906 29 100.0 36 ............................. CAGGATGGTATGGTCGATTTGGAAAAGATTAAAGAC 337971 29 100.0 37 ............................. TTGTTTTGTTGCTTGTAAAGGCGTTGTAGAAATTCTG 338037 29 100.0 36 ............................. GCGGTTTTTTTACTATAAACTCTTGAAAAATTTTTA 338102 29 100.0 38 ............................. TTTTTAGTTGTTCGTTGGTGGTTTTATTTACACACACA 338169 29 100.0 36 ............................. ACGTTGCCTGATGGGTCATACAAACTAATTGTGACT 338234 29 100.0 38 ............................. TTCTCTTTGCTACCCCATTGATAGTGCGGGCATTTCTC 338301 29 100.0 37 ............................. TTCTTTCATTACTTCATCAAGAGAAGAATGCATTGAA 338367 29 100.0 36 ............................. TATTCTTTCAAGCTCCGCCTGTACGTCCGTTACCCA 338432 29 100.0 37 ............................. TCAAGTTTTAAAAGCTGAGATTTAACAGAATCATTCA 338498 29 100.0 37 ............................. ACAATGGTATATACAATATAAATCCGAATGCTTGCAT 338564 29 100.0 37 ............................. AGGAGTAGGGATGTTATGTTTGGATAAGGGGTGTAGA 338630 29 100.0 37 ............................. CATAGTACCGTCTGATGCACCAGATTTGCCACATGTT 338696 29 100.0 38 ............................. AGGAATAATCTGTATTATTTCATTCCAGTCAACAAACG 338763 29 100.0 37 ............................. TTACATTGTCAAAAGTGGGTAAGCCACCCTTGGTAAG 338829 29 100.0 35 ............................. GTTAGATTTTTAATTGTTACCCAATCTCCTGCTGA 338893 29 100.0 37 ............................. GCCTTTCATTACAAGAAGGGAATTTGGTCTATGAATA 338959 29 100.0 37 ............................. CGTAAAGGTTGCGGTCTTTGATTGCGTGAAGCTCATC 339025 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 135 29 100.0 37 GTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : TATTTGTAATAGTCACATATGATGTCAATGAAAAAAGAGTCAACAAGGTAAGAAAGATTTTGAAAAAATACTTCACATGGGTTCAAAACTCAGTATTCGAAGGTGAAATCACATTGGGCAAGCTTGAAAAATGCAAACGTGAACTTTTATCGGTTATAGAGAAGAATGAAGATTCAGTGTATTTTTATGAGATGGAATATAAACTTGTGTGCAATAAAAAGGTTTTAGGACAAGAAAAGAACTATGATTCTATTATAATTTGAAGATTTTGAAATGAATCCATTGATGAATAAGTATTTCCGAAACTAACCATTTTGCAGCGAGGCTTATAACTATTTTAAAGTTTCTGTCTTCTTTTCCTACAAGGCTTTCAAGACTCTTTACCATCTCCTTACAAAACCCAACCATCCCCTCGCTGCAATTTATTTTTGTTGTGAAAAATTTGTTAATAGGTTATAATATAGATGTAGCATAGAAAAGATGATATTTATTATTAATGG # Right flank : CCTTCAACTGCATTTTCAATATAACCTTTTATCACAGTTTTATCTGTTAGCACGAAAATAGATTGCATTCAAAAATGATTTTGAACATAAACAATAGAAGATTCTCAATCATTTAATAAGAAAAAAAGACAATAACAAACTAACCGATGCTAAAAAGGCATCAGCTGGAATTATTATAAATTTAATCAAGATTTAAACTGATTGGGGGCTTATAACTTCTAAACCAAACTTTTTTGCTTCGCTGATAAGTCGATTAAAACGAATTATCTCTTGTTTCTTTCGAACTTCACTAAAAACTTTTTCATCATAGTCAGTGTCATTCTTAAGCATATTATAGATTATAACCAGTAATTTTCTAGCAAGAGCTACTATTGCTTTCTTTGCCCCTCGGCGCTGCTTTACTTTCCAATACCACGTAGCAAGGTATGAATCTCTTACGCGAGTTAGACTCCATGCAACTTCACACAGTATCCTCTTGATGTAGGTATTACCCTTTGTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 8 342897-344170 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHE01000001.1 Caldicellulosiruptor bescii strain RKCB120 Ga0154041_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 342897 29 75.9 38 T.GAC..T.AC.................. GTCATCTTTCATTTCAAACATTGAACGTTTTTTGTGAC 342964 29 100.0 38 ............................. GTCATCTTTCATTTCAAACATTGAACGTTTTTTGTGAC 343031 29 100.0 35 ............................. GTCCCAATCTTTTGTTATATTGTAAGTTGGTATAG 343095 29 100.0 37 ............................. TTTAAAATCATTATGATATGCTAAGGCATAGTAGATG 343161 29 100.0 38 ............................. GACATCTTTGTTAAAACTGTGGTAGACAGCGTTCGCAA 343228 29 100.0 37 ............................. TGAGGATTATGCGAGAAAAGTTGCTAAAGCAAGTTTG 343294 29 100.0 37 ............................. AAAAACATACTATACAATCAATAAGAATTTTTATCAT 343360 29 100.0 36 ............................. CTTAAAGGGCTTGAAAACTTAACTGTTGCTCAGCAG 343425 29 100.0 37 ............................. AACATATCTTGCATACGCTTTTTTAGATTCACATCTT 343491 29 100.0 36 ............................. TTGAAGCTGTACAAAGAGAAATGAAAAGAAGAGCTC 343556 29 100.0 36 ............................. CTTCACAAGACATGTATCAAAATATTTACAACCTTG 343621 29 100.0 36 ............................. AATTCAAAAATGGATTATAGCAAAAATCAGCTTCAA 343686 29 100.0 36 ............................. GGCAAGAAGAATAAGGCAGGCAATACCTGTTTTGAG 343751 29 100.0 36 ............................. CGGGATTAAGATAGGCGTTCAAGCAAACACAACAGG 343816 29 100.0 37 ............................. ATGAAAGAGCTGAAAGCAGATTTAATGAGCAAGAAAG 343882 29 100.0 36 ............................. GGCTCTGGTTTAAATTGAGAAATAAATCCATTGCCT 343947 29 100.0 36 ............................. GGTGAAATATTTAATAATGTGTTAGGATAAGGAACA 344012 29 96.6 35 .........A................... AGTTTTTATCAAGAATTTTTTCTTTTGTTATGCTG 344076 29 100.0 38 ............................. TTGAATCTAACGCAGCAACGCCTCCGCTTTTTTGTATA 344143 28 72.4 0 ..................-.C..TCCTGT | ========== ====== ====== ====== ============================= ====================================== ================== 20 29 97.2 37 GTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : TTGTCGGAACACCAGGGGTAGGGAAAACGCATCTAGCCACAGCAATAGGTATAGAGTGTGCAAAACGAAGGTATTCAACATATTTTATACATTTTCAAGAGTTAATAGCCCAGCTAAAGAAAGTATTATTGGAGAACAGATTAGAGTACAGACTTAAGCATTTTTCGAAATACAAAGTTTTAATAATAGATGAGATAGGTTATTTGCCAATAGACAATGATGGAGCAAATTTATTTTTCCAGCTAATATCGAGCAGATATGAGAAGAGCAGTACAATAATAACAACTAATGTTGTATTCTCAGAATGGGGAGAGATATTTGGTGGAGCGACAATAGCAAATGCAATTTTAGATAGGCTACTGCATCATTCTTACGTGATTTTCATAAAAGGTCCTTCATACAGATTGCAGTCAAAAACAGCATATTTTAGCAATACAAACCAGCAAAGTTAAGTTTATTTTTTGTACATTTTTATTTTCGATTTTTTGTTCATTTTGATA # Right flank : TAATGAACGAAAATGAGTGAAAATGAAGTGAAATGAGATTTGAAAAAGAAAAGGTACCTCCTGATAAAATATAGTTAAGTAAGTTCTAGAACTTACGAGAAATCATCACAAAAGGAGGTACCTACCTTGAAGTATACACAAAATGAGAAGATATTACAAGTCACAGAGAAAACATTAGTTGTAGGAGTAGATATAGCAAAGGAAAGGCATGTTGGCAGAGCATTTGATTTTAGAGGAGTGGAGCTTGGCAAGAGAATAGAGTTTGAGAATAGAAAAGAAGGTATGGAAAAATTTTTGGATTGGGCAAATAAGATAATGAAAGCAAATGGCAAAGAGAACGTGATGAGACTTGTCAAGAATTTTGTGTTTCCAATTTATAACGCAAATTGTAGAGTTGGGTTATGTTGTTAATGCATTTTCTAATGCTGGGAACTCCATTTTTCCATTTTGTACGGCGTAAGTTCTCTTCTTGTTAAGTAAATATTAATTTCTAAGACTTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [7-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //