Array 1 2227655-2227945 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072021.1 Akkermansia muciniphila strain Akk2196 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2227655 31 100.0 34 ............................... TAACTTTATGTAAGGCAAAGAATATGGAAGTTTG 2227720 31 100.0 33 ............................... GGGAACAAGGCCAATTTAGCATAGGAGCGGATT 2227784 31 100.0 34 ............................... CGAGCTTGGTTTCCGGCCTCCCTTCCGTCCGTTG 2227849 31 100.0 34 ............................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 2227914 31 87.1 0 .....................A..A....TA | G [2227927] ========== ====== ====== ====== =============================== ================================== ================== 5 31 97.4 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGGATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCGCGCCGCCCGGGAGGCCTGTTGTGTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACGTGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGCAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGGCCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTCCAGGCC # Right flank : AGTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTTTGATAAATGGTTTTAAATGGTTATTTATTGAATATTCTTTTGAGGAGGGTTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGTATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGAC # Questionable array : NO Score: 8.93 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2468184-2469123 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072021.1 Akkermansia muciniphila strain Akk2196 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2468184 31 100.0 35 ............................... GTTAGTTTTCCTCTGCTCTGAAAGTTGCTTGGCCG 2468250 31 100.0 34 ............................... CTCCAACGGCGTCCAACTGGTGCATGTCATCCAG 2468315 31 100.0 34 ............................... TTTCAGTGCCATATTTTTAGTTTAGTTTAGTTTG 2468380 31 100.0 34 ............................... TCGCAGTACATTAACAATATGTCCCGCTCCGCAG 2468445 31 100.0 34 ............................... TACGCTTTCCCCGGTATCGACGCCGATATAACAG 2468510 31 100.0 34 ............................... TGGAAGCCGGAGCGCGGTATCGTCAAACCAGCTT 2468575 31 100.0 33 ............................... GCCAGGTCCTCCTTACTCTCGATTTTGACGCGG 2468639 31 100.0 34 ............................... GATGTGCGGACAGTCCTCGTATTTGACCCGGATT 2468704 31 100.0 33 ............................... GCCAGGTCCTCCTTACTCTCGATTTTGACGCGG 2468768 31 100.0 34 ............................... GATGTGCGGACAGTCCTCGTATTTGACCCGGATT 2468833 31 100.0 34 ............................... GGCAATAATGTGCCTGCTTGTTTGTGTGCTCTAA 2468898 31 100.0 34 ............................... CAGAAGAGCAGCAGGCCTTTGCCGCAGCCGAAAG 2468963 31 100.0 34 ............................... CAGTTTTTGGCCTGCTCCCTGGCGACAGTCCGCA 2469028 31 100.0 34 ............................... GATGGTGTTGCCCGTCACCTTGGTGTTCTTCCGC 2469093 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 15 31 100.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CTTGGGGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACCTGTTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGACAGCCGCCGATGCCGGAAAACACTTCAAGGCCACTCCATTAATATGGAGCGGCCTTTTGATTTCAAAATGGCTGTGGAGAAAAAGTTGCTGGACGATGGACCCTTGACCATCTAGCATCAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATTGCTGAACCGATAAACTGTTTGCGCCAACCTCAAGCTCACAGAAATTCCCCGGGAGATCGGCGATTTCTGTAAGTCCTTGAAATCAGTAGATTGACATTCTTTCCAATAAAATATAAGGGGGTAAGGAATATGCATCTTGAAAGAGGTTGGCGCAAAGGGCTGTTTGTACCACTAACTTTCAATGCATATTCCCTTCCGCC # Right flank : CTTTGTTGAGCGGGTTTCACGATCCTGTGTTGGCCGTCGCACCTGTAACGTCGCAGCGCATCGTAGAAAAATTATCAAGCATCGTGGAAAAACGCCCTTGAACGTCTGCCCGCTGCATCCCCATTGCAACCTGGTTGCACCTCCCTTGAAAACGGCTTGAACTGGCCTCCCTACTCCCCGATCACGTCCCTGGCGGCCAACTCGTCAAATACGCGAATGAATTCTGCTGCGTCCATCTGCTGCCGGGGCATGTGAAGAGTGCCCAGCGTCACCACGTCCAGCCGGTCATATTTGGCTACTGCCGGCATCGTTGGCCAGCGGTAGGCCGCCCAGCGCCCCTCCGGCCGTGATGCCGCCCAGGGCCGCTCTATATGAAGCGGAACCCCTGCGGCCATGGCCAGGCGTCCCGTTGCTATATCCTCCGGATCGTCACCCCCAATGGGCAGCCGGTCCAGAACTGCAAGCATCCGGCGCAACGCGGACCCCGTGAACCCATAGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2924860-2923080 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072021.1 Akkermansia muciniphila strain Akk2196 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2924859 31 100.0 34 ............................... CTCCAACGGCGTCCAACTGGTGCATGTCATCCAG 2924794 31 100.0 34 ............................... CTCCAACGGCGTCCAACTGGTGCATGTCATCCAG 2924729 31 100.0 33 ............................... TCCTAACACGCTAGCATTTAAAGCGTTATAATG 2924665 31 100.0 34 ............................... AGCGATTTCAATGCACGTCTGTTCCCGGTTTGCC 2924600 31 100.0 33 ............................... CTTGTTTTTCCGCTTGGCAAGCTTTTTCAAGGT 2924536 31 100.0 34 ............................... TTCGTAAAAATCCCCGCGCCGTACCCACCAGGAC 2924471 31 100.0 34 ............................... CGCCGTGGCATTTTTTAAACACTTCACAGAACAA 2924406 31 100.0 34 ............................... TGTTTGGCATGGGGCGTTTTTGCTCTATCCAGTT 2924341 31 100.0 34 ............................... AGGTGCTGACGTGGCATTCTTTCGGCCAGGACGG 2924276 31 100.0 34 ............................... CGTTTTTGGGGCGTCATGGTCAACTTCGTTCCCG 2924211 31 100.0 34 ............................... CCTTCGGAGGCTTTCTATCACCTCGGCCAGGGAT 2924146 31 100.0 33 ............................... AACTTTATCTCCTACCTTCACCCGCATGATGGG 2924082 31 100.0 34 ............................... AGGAAATACCTTGAAAAATATCTCACCGGAGAAA 2924017 31 100.0 33 ............................... CCTGGATTTTGCCAAGGCATCCCCTGTTTCCGC 2923953 31 100.0 34 ............................... CTGGTCTGGTAGCAAGGCAGGTTGGTTTGGAATT 2923888 31 100.0 34 ............................... TCTGCGGAGAGCATCATGCGGCCATATCCGCCGC 2923823 31 100.0 34 ............................... AATAACCCATACCCACTGATTCAGATTAATGGAG 2923758 31 100.0 33 ............................... ATCTACCTGGATTTCCGCGAGGTGGTGAAGGAA 2923694 31 100.0 34 ............................... TTCCACGTCCACTTTTTGCGGCTTGCCGTGTCCC 2923629 31 100.0 34 ............................... TGTTATCGGATAATCTGTTTTTAGATATTGGCGC 2923564 31 100.0 34 ............................... ACGCACCCGCGCCTTGTACACCCCATCATAATAG 2923499 31 100.0 34 ............................... AGCAGTATTCAGCCATCCGGCTTTATCATCATCC 2923434 31 100.0 35 ............................... CAAAAACGCGTGGACGACGCCCGCGCCAGCCTCGC 2923368 31 100.0 33 ............................... GATAAGCTTGTATTCCGCCAGGGTGATAGCCTG 2923304 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 2923240 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 2923175 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 2923110 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== =================================== ================== 28 31 99.7 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : TCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //